Gene annotation
Transcriptome id Sobic.009G046700.1
Synonym Sb09g004010
Functional annotation ranBP1 domain containing protein, expressed
UniProt C5Z061
Pfam PF00638 PF08911
Panther DB PTHR23138 PTHR23138:SF99
NCBI CDD KOG2724; Nuclear pore complex component NPAP60L/NUP50
KEGG Orthology K15304; Ran-binding protein 3
Gene Ontology GO:0005643; nuclear pore


Orthologs (automatic annotation)
TAIR AT1G52380 : NUP50 (Nucleoporin 50 kDa) protein
RAP-DB (Rice) LOC_Os05g28190.1 : ranBP1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a027908 , Zm00025a038896
Brachypodium KQK17226 , PNT75476 , PNT75475
Barley HORVU7Hr1G101390.1 , HORVU7Hr1G101390.5 , HORVU7Hr1G101390.4 , HORVU7Hr1G101390.6 , HORVU7Hr1G101390.9 , HORVU7Hr1G101390.8 , HORVU1Hr1G059860.2 , HORVU1Hr1G059860.1
Wheat TraesCS7B02G342800 , TraesCS7B02G342800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G046700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G258900 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
2 Sobic.008G098600 DNA-directed RNA polymerase III subunit RPC9, putative, expressed -
3 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
4 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
5 Sobic.008G009600 double-stranded RNA binding motif containing protein, expressed -
6 Sobic.006G194400 cyclin-T1-4, putative, expressed K15188: cyclin T
7 Sobic.010G073200 nucleolar GTP-binding protein 1, putative, expressed K06943: nucleolar GTP-binding protein
8 Sobic.009G225200 expressed protein -
9 Sobic.001G081000 nucleotide-binding protein-like, putative, expressed K03593: mrp, ATP-binding protein involved in chromosome partitioning
10 Sobic.006G102100 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
11 Sobic.009G238850 - -
12 Sobic.008G078300 la domain containing protein, expressed K15191: La-related protein 7
13 Sobic.005G157100 THUMP domain-containing protein, putative, expressed K06963: TAN1, tRNA acetyltransferase TAN1
14 Sobic.004G087600 RNA recognition motif containing protein, putative, expressed -
15 Sobic.001G360900 peptidyl-prolyl isomerase PASTICCINO1, putative, expressed -
16 Sobic.003G221600 expressed protein -
17 Sobic.001G029400 RNA-binding motif protein, putative, expressed K13107: RBMX2, RNA-binding motif protein, X-linked 2
18 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
19 Sobic.008G131000 domain of unknown function family protein, expressed -
20 Sobic.003G141500 CGMC_GSK.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta


Gene co-expression network
sample Sobic009G046700 Sobic009G046700 Sobic003G258900 Sobic003G258900 Sobic009G046700--Sobic003G258900 Sobic008G098600 Sobic008G098600 Sobic009G046700--Sobic008G098600 Sobic004G011000 Sobic004G011000 Sobic009G046700--Sobic004G011000 Sobic006G226300 Sobic006G226300 Sobic009G046700--Sobic006G226300 Sobic008G009600 Sobic008G009600 Sobic009G046700--Sobic008G009600 Sobic006G194400 Sobic006G194400 Sobic009G046700--Sobic006G194400 Sobic010G073200 Sobic010G073200 Sobic009G046700--Sobic010G073200 Sobic009G225200 Sobic009G225200 Sobic009G046700--Sobic009G225200 Sobic001G081000 Sobic001G081000 Sobic009G046700--Sobic001G081000 Sobic002G396000 Sobic002G396000 Sobic003G258900--Sobic002G396000 Sobic002G158700 Sobic002G158700 Sobic003G258900--Sobic002G158700 Sobic003G267800 Sobic003G267800 Sobic003G258900--Sobic003G267800 Sobic006G102100 Sobic006G102100 Sobic003G258900--Sobic006G102100 Sobic003G258900--Sobic001G081000 Sobic003G258900--Sobic006G226300 Sobic003G442000 Sobic003G442000 Sobic003G258900--Sobic003G442000 Sobic003G258900--Sobic009G225200 Sobic003G258900--Sobic009G046700 Sobic010G007100 Sobic010G007100 Sobic008G098600--Sobic010G007100 Sobic003G214300 Sobic003G214300 Sobic008G098600--Sobic003G214300 Sobic003G382500 Sobic003G382500 Sobic008G098600--Sobic003G382500 Sobic008G098600--Sobic009G046700 Sobic003G006400 Sobic003G006400 Sobic008G098600--Sobic003G006400 Sobic006G142400 Sobic006G142400 Sobic008G098600--Sobic006G142400 Sobic009G251200 Sobic009G251200 Sobic008G098600--Sobic009G251200 Sobic010G264000 Sobic010G264000 Sobic008G098600--Sobic010G264000 Sobic001G322600 Sobic001G322600 Sobic008G098600--Sobic001G322600 Sobic004G011000--Sobic008G009600 Sobic009G040500 Sobic009G040500 Sobic004G011000--Sobic009G040500 Sobic003G115100 Sobic003G115100 Sobic004G011000--Sobic003G115100 Sobic004G011000--Sobic009G046700 Sobic010G251100 Sobic010G251100 Sobic004G011000--Sobic010G251100 Sobic001G010600 Sobic001G010600 Sobic004G011000--Sobic001G010600 Sobic001G370300 Sobic001G370300 Sobic004G011000--Sobic001G370300 Sobic010G247400 Sobic010G247400 Sobic004G011000--Sobic010G247400 Sobic009G193850 Sobic009G193850 Sobic004G011000--Sobic009G193850 Sobic002G142600 Sobic002G142600 Sobic006G226300--Sobic002G142600 Sobic001G346900 Sobic001G346900 Sobic006G226300--Sobic001G346900 Sobic005G157100 Sobic005G157100 Sobic006G226300--Sobic005G157100 Sobic003G042400 Sobic003G042400 Sobic006G226300--Sobic003G042400 Sobic004G285000 Sobic004G285000 Sobic006G226300--Sobic004G285000 Sobic008G147200 Sobic008G147200 Sobic006G226300--Sobic008G147200 Sobic005G137700 Sobic005G137700 Sobic006G226300--Sobic005G137700 Sobic006G226300--Sobic003G258900 Sobic001G246500 Sobic001G246500 Sobic006G226300--Sobic001G246500 Sobic006G049600 Sobic006G049600 Sobic008G009600--Sobic006G049600 Sobic008G009600--Sobic004G011000 Sobic001G017700 Sobic001G017700 Sobic008G009600--Sobic001G017700 Sobic001G142100 Sobic001G142100 Sobic008G009600--Sobic001G142100 Sobic008G009600--Sobic010G073200 Sobic003G407600 Sobic003G407600 Sobic008G009600--Sobic003G407600 Sobic001G145400 Sobic001G145400 Sobic008G009600--Sobic001G145400 Sobic009G101200 Sobic009G101200 Sobic008G009600--Sobic009G101200 Sobic008G009600--Sobic006G226300 Sobic008G131000 Sobic008G131000 Sobic006G194400--Sobic008G131000 Sobic005G106500 Sobic005G106500 Sobic006G194400--Sobic005G106500 Sobic001G227200 Sobic001G227200 Sobic006G194400--Sobic001G227200 Sobic007G203200 Sobic007G203200 Sobic006G194400--Sobic007G203200 Sobic001G360900 Sobic001G360900 Sobic006G194400--Sobic001G360900 Sobic010G236400 Sobic010G236400 Sobic006G194400--Sobic010G236400 Sobic003G141500 Sobic003G141500 Sobic006G194400--Sobic003G141500 Sobic006G194400--Sobic002G396000 Sobic010G209400 Sobic010G209400 Sobic006G194400--Sobic010G209400 Sobic010G073200--Sobic008G009600 Sobic010G073200--Sobic003G258900 Sobic001G126600 Sobic001G126600 Sobic010G073200--Sobic001G126600 Sobic010G073200--Sobic009G046700 Sobic001G177100 Sobic001G177100 Sobic010G073200--Sobic001G177100 Sobic010G073200--Sobic009G040500 Sobic010G073200--Sobic003G407600 Sobic001G507900 Sobic001G507900 Sobic010G073200--Sobic001G507900 Sobic010G073200--Sobic006G226300 Sobic009G117300 Sobic009G117300 Sobic009G225200--Sobic009G117300 Sobic009G117400 Sobic009G117400 Sobic009G225200--Sobic009G117400 Sobic005G015100 Sobic005G015100 Sobic009G225200--Sobic005G015100 Sobic001G043900 Sobic001G043900 Sobic009G225200--Sobic001G043900 Sobic009G225200--Sobic003G258900 Sobic004G271900 Sobic004G271900 Sobic009G225200--Sobic004G271900 Sobic004G348100 Sobic004G348100 Sobic009G225200--Sobic004G348100 Sobic009G225200--Sobic003G442000 Sobic009G015800 Sobic009G015800 Sobic009G225200--Sobic009G015800 Sobic004G018300 Sobic004G018300 Sobic001G081000--Sobic004G018300 Sobic003G221600 Sobic003G221600 Sobic001G081000--Sobic003G221600 Sobic001G081000--Sobic008G131000 Sobic001G081000--Sobic003G141500 Sobic008G014500 Sobic008G014500 Sobic001G081000--Sobic008G014500 Sobic001G081000--Sobic003G258900 Sobic008G083000 Sobic008G083000 Sobic001G081000--Sobic008G083000 Sobic007G220300 Sobic007G220300 Sobic001G081000--Sobic007G220300 Sobic009G145101 Sobic009G145101 Sobic001G081000--Sobic009G145101
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.