Gene annotation
Transcriptome id Sobic.008G098600.2,Sobic.008G098600.1
Synonym Sb08g014990
Functional annotation DNA-directed RNA polymerase III subunit RPC9, putative, expressed
UniProt C5YNS2
Pfam PF03874
Panther DB PTHR15561 PTHR15561:SF0
NCBI CDD KOG4168; Predicted RNA polymerase III subunit C17
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity


Orthologs (automatic annotation)
TAIR AT5G62950 : RNA polymerase II, Rpb4, core protein
RAP-DB (Rice) LOC_Os12g30510.1 : DNA-directed RNA polymerase III subunit RPC9, putative, expressed
MaizeGDB (Corn) Zm00025a046577 , Zm00025a010531 , Zm00025a010532
Brachypodium KQJ86695
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.008G098600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
2 Sobic.003G214300 expressed protein -
3 Sobic.003G382500 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
4 Sobic.009G046700 ranBP1 domain containing protein, expressed K15304: Ran-binding protein 3
5 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
6 Sobic.006G142400 suppressor of stem-loop protein 1, putative, expressed K03142: TFIIH2, GTF2H2, transcription initiation factor TFIIH subunit 2
7 Sobic.009G251200 expressed protein -
8 Sobic.010G264000 expressed protein(PubMedID : 28640841)@expressed protein -
9 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
11 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
12 Sobic.010G128101 - -
13 Sobic.007G143500 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
14 Sobic.003G258900 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
15 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
16 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
17 Sobic.009G080100 - -
18 Sobic.010G151900 ribonuclease P family protein, putative, expressed K03538: POP4, ribonuclease P protein subunit POP4
19 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
20 Sobic.007G162800 expressed protein -


Gene co-expression network
sample Sobic008G098600 Sobic008G098600 Sobic010G007100 Sobic010G007100 Sobic008G098600--Sobic010G007100 Sobic003G214300 Sobic003G214300 Sobic008G098600--Sobic003G214300 Sobic003G382500 Sobic003G382500 Sobic008G098600--Sobic003G382500 Sobic009G046700 Sobic009G046700 Sobic008G098600--Sobic009G046700 Sobic003G006400 Sobic003G006400 Sobic008G098600--Sobic003G006400 Sobic006G142400 Sobic006G142400 Sobic008G098600--Sobic006G142400 Sobic009G251200 Sobic009G251200 Sobic008G098600--Sobic009G251200 Sobic010G264000 Sobic010G264000 Sobic008G098600--Sobic010G264000 Sobic001G322600 Sobic001G322600 Sobic008G098600--Sobic001G322600 Sobic001G145400 Sobic001G145400 Sobic010G007100--Sobic001G145400 Sobic008G147200 Sobic008G147200 Sobic010G007100--Sobic008G147200 Sobic004G340400 Sobic004G340400 Sobic010G007100--Sobic004G340400 Sobic006G086600 Sobic006G086600 Sobic010G007100--Sobic006G086600 Sobic005G137700 Sobic005G137700 Sobic010G007100--Sobic005G137700 Sobic006G077200 Sobic006G077200 Sobic010G007100--Sobic006G077200 Sobic002G235200 Sobic002G235200 Sobic010G007100--Sobic002G235200 Sobic006G002800 Sobic006G002800 Sobic010G007100--Sobic006G002800 Sobic003G042400 Sobic003G042400 Sobic010G007100--Sobic003G042400 Sobic003G214300--Sobic006G142400 Sobic003G214300--Sobic008G098600 Sobic001G499000 Sobic001G499000 Sobic003G214300--Sobic001G499000 Sobic004G072800 Sobic004G072800 Sobic003G214300--Sobic004G072800 Sobic003G214300--Sobic010G264000 Sobic009G131900 Sobic009G131900 Sobic003G214300--Sobic009G131900 Sobic010G247400 Sobic010G247400 Sobic003G214300--Sobic010G247400 Sobic001G061200 Sobic001G061200 Sobic003G214300--Sobic001G061200 Sobic007G162800 Sobic007G162800 Sobic003G214300--Sobic007G162800 Sobic009G138700 Sobic009G138700 Sobic003G382500--Sobic009G138700 Sobic003G382500--Sobic008G098600 Sobic006G084000 Sobic006G084000 Sobic003G382500--Sobic006G084000 Sobic003G407600 Sobic003G407600 Sobic003G382500--Sobic003G407600 Sobic001G017700 Sobic001G017700 Sobic003G382500--Sobic001G017700 Sobic003G287100 Sobic003G287100 Sobic003G382500--Sobic003G287100 Sobic007G112600 Sobic007G112600 Sobic003G382500--Sobic007G112600 Sobic003G382500--Sobic010G007100 Sobic008G009600 Sobic008G009600 Sobic003G382500--Sobic008G009600 Sobic003G258900 Sobic003G258900 Sobic009G046700--Sobic003G258900 Sobic009G046700--Sobic008G098600 Sobic004G011000 Sobic004G011000 Sobic009G046700--Sobic004G011000 Sobic006G226300 Sobic006G226300 Sobic009G046700--Sobic006G226300 Sobic009G046700--Sobic008G009600 Sobic006G194400 Sobic006G194400 Sobic009G046700--Sobic006G194400 Sobic010G073200 Sobic010G073200 Sobic009G046700--Sobic010G073200 Sobic009G225200 Sobic009G225200 Sobic009G046700--Sobic009G225200 Sobic001G081000 Sobic001G081000 Sobic009G046700--Sobic001G081000 Sobic006G208500 Sobic006G208500 Sobic003G006400--Sobic006G208500 Sobic006G200700 Sobic006G200700 Sobic003G006400--Sobic006G200700 Sobic002G275600 Sobic002G275600 Sobic003G006400--Sobic002G275600 Sobic001G369000 Sobic001G369000 Sobic003G006400--Sobic001G369000 Sobic006G138000 Sobic006G138000 Sobic003G006400--Sobic006G138000 Sobic010G151900 Sobic010G151900 Sobic003G006400--Sobic010G151900 Sobic003G006400--Sobic001G145400 Sobic003G006400--Sobic006G077200 Sobic003G006400--Sobic010G007100 Sobic006G142400--Sobic003G214300 Sobic001G099900 Sobic001G099900 Sobic006G142400--Sobic001G099900 Sobic001G042200 Sobic001G042200 Sobic006G142400--Sobic001G042200 Sobic006G142400--Sobic010G264000 Sobic007G042900 Sobic007G042900 Sobic006G142400--Sobic007G042900 Sobic009G040800 Sobic009G040800 Sobic006G142400--Sobic009G040800 Sobic002G150700 Sobic002G150700 Sobic006G142400--Sobic002G150700 Sobic001G012900 Sobic001G012900 Sobic006G142400--Sobic001G012900 Sobic004G084500 Sobic004G084500 Sobic006G142400--Sobic004G084500 Sobic002G298100 Sobic002G298100 Sobic009G251200--Sobic002G298100 Sobic003G133900 Sobic003G133900 Sobic009G251200--Sobic003G133900 Sobic005G160100 Sobic005G160100 Sobic009G251200--Sobic005G160100 Sobic009G251200--Sobic001G081000 Sobic009G251200--Sobic006G226300 Sobic004G309900 Sobic004G309900 Sobic009G251200--Sobic004G309900 Sobic006G185200 Sobic006G185200 Sobic009G251200--Sobic006G185200 Sobic001G393900 Sobic001G393900 Sobic009G251200--Sobic001G393900 Sobic008G014500 Sobic008G014500 Sobic009G251200--Sobic008G014500 Sobic006G270600 Sobic006G270600 Sobic010G264000--Sobic006G270600 Sobic008G129600 Sobic008G129600 Sobic010G264000--Sobic008G129600 Sobic008G103300 Sobic008G103300 Sobic010G264000--Sobic008G103300 Sobic010G264000--Sobic001G042200 Sobic010G235200 Sobic010G235200 Sobic010G264000--Sobic010G235200 Sobic003G363700 Sobic003G363700 Sobic010G264000--Sobic003G363700 Sobic003G182300 Sobic003G182300 Sobic010G264000--Sobic003G182300 Sobic001G492200 Sobic001G492200 Sobic010G264000--Sobic001G492200 Sobic010G264000--Sobic006G142400 Sobic010G083900 Sobic010G083900 Sobic001G322600--Sobic010G083900 Sobic009G163600 Sobic009G163600 Sobic001G322600--Sobic009G163600 Sobic002G344500 Sobic002G344500 Sobic001G322600--Sobic002G344500 Sobic003G014700 Sobic003G014700 Sobic001G322600--Sobic003G014700 Sobic004G354000 Sobic004G354000 Sobic001G322600--Sobic004G354000 Sobic010G224700 Sobic010G224700 Sobic001G322600--Sobic010G224700 Sobic001G322600--Sobic003G407600 Sobic005G028300 Sobic005G028300 Sobic001G322600--Sobic005G028300 Sobic002G378100 Sobic002G378100 Sobic001G322600--Sobic002G378100
Octagon: transcription factors


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