Gene annotation
Transcriptome id Sobic.007G143500.5,Sobic.007G143500.4,Sobic.007G143500.3,Sobic.007G143500.2,Sobic.007G143500.1
Synonym Sb07g021880
Functional annotation splicing factor 3B subunit 5, putative, expressed
UniProt C5XZL2
Pfam PF07189
Panther DB PTHR20978 PTHR20978:SF0
NCBI CDD KOG3485; Uncharacterized conserved protein
KEGG Orthology K12832; SF3B5, splicing factor 3B subunit 5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14342 : Splicing factor 3B subunit 5/RDS3 complex subunit 10
RAP-DB (Rice) LOC_Os08g34480.1 : splicing factor 3B subunit 5, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ98483 , KQK23171
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G143500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
2 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
3 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
4 Sobic.001G007800 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
5 Sobic.001G416700 arginine biosynthesis bifunctional protein argJ 1, putative, expressed K00620: glutamate N-acetyltransferase / amino-acid N-acetyltransferase
6 Sobic.005G178700 OsFBX135 - F-box domain containing protein, expressed -
7 Sobic.008G098600 DNA-directed RNA polymerase III subunit RPC9, putative, expressed -
8 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
9 Sobic.004G235500 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
10 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
11 Sobic.007G187600 pentatricopeptide, putative, expressed -
12 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
13 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
14 Sobic.003G246000 exosome complex exonuclease RRP40, putative, expressed K03681: RRP40, exosome complex component RRP40
15 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
16 Sobic.006G142400 suppressor of stem-loop protein 1, putative, expressed K03142: TFIIH2, GTF2H2, transcription initiation factor TFIIH subunit 2
17 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
18 Sobic.007G030600 NOL1/NOP2/sun family protein, putative, expressed -
19 Sobic.001G127100 alkaline phytoceramidase, putative, expressed K04711: ACER3, dihydroceramidase
20 Sobic.010G264000 expressed protein(PubMedID : 28640841)@expressed protein -


Gene co-expression network
sample Sobic007G143500 Sobic007G143500 Sobic001G334100 Sobic001G334100 Sobic007G143500--Sobic001G334100 Sobic004G307500 Sobic004G307500 Sobic007G143500--Sobic004G307500 Sobic001G168900 Sobic001G168900 Sobic007G143500--Sobic001G168900 Sobic001G007800 Sobic001G007800 Sobic007G143500--Sobic001G007800 Sobic001G416700 Sobic001G416700 Sobic007G143500--Sobic001G416700 Sobic005G178700 Sobic005G178700 Sobic007G143500--Sobic005G178700 Sobic008G098600 Sobic008G098600 Sobic007G143500--Sobic008G098600 Sobic002G005000 Sobic002G005000 Sobic007G143500--Sobic002G005000 Sobic004G235500 Sobic004G235500 Sobic007G143500--Sobic004G235500 Sobic001G334100--Sobic007G143500 Sobic003G184400 Sobic003G184400 Sobic001G334100--Sobic003G184400 Sobic005G199200 Sobic005G199200 Sobic001G334100--Sobic005G199200 Sobic003G259600 Sobic003G259600 Sobic001G334100--Sobic003G259600 Sobic005G059400 Sobic005G059400 Sobic001G334100--Sobic005G059400 Sobic002G142600 Sobic002G142600 Sobic001G334100--Sobic002G142600 Sobic006G180700 Sobic006G180700 Sobic001G334100--Sobic006G180700 Sobic004G067400 Sobic004G067400 Sobic001G334100--Sobic004G067400 Sobic005G000300 Sobic005G000300 Sobic001G334100--Sobic005G000300 Sobic004G307500--Sobic001G168900 Sobic001G524400 Sobic001G524400 Sobic004G307500--Sobic001G524400 Sobic002G077900 Sobic002G077900 Sobic004G307500--Sobic002G077900 Sobic004G307500--Sobic002G005000 Sobic009G258400 Sobic009G258400 Sobic004G307500--Sobic009G258400 Sobic001G291800 Sobic001G291800 Sobic004G307500--Sobic001G291800 Sobic004G307500--Sobic007G143500 Sobic004G307500--Sobic001G007800 Sobic001G527300 Sobic001G527300 Sobic004G307500--Sobic001G527300 Sobic007G187600 Sobic007G187600 Sobic001G168900--Sobic007G187600 Sobic001G168900--Sobic004G307500 Sobic001G168900--Sobic002G077900 Sobic001G168900--Sobic001G291800 Sobic001G168900--Sobic009G258400 Sobic001G042200 Sobic001G042200 Sobic001G168900--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic001G168900--Sobic006G049100 Sobic004G346100 Sobic004G346100 Sobic001G168900--Sobic004G346100 Sobic003G132000 Sobic003G132000 Sobic001G168900--Sobic003G132000 Sobic002G150700 Sobic002G150700 Sobic001G007800--Sobic002G150700 Sobic001G007800--Sobic004G307500 Sobic004G340400 Sobic004G340400 Sobic001G007800--Sobic004G340400 Sobic001G007800--Sobic007G143500 Sobic001G007800--Sobic001G334100 Sobic009G235000 Sobic009G235000 Sobic001G007800--Sobic009G235000 Sobic006G193300 Sobic006G193300 Sobic001G007800--Sobic006G193300 Sobic008G160000 Sobic008G160000 Sobic001G007800--Sobic008G160000 Sobic007G089800 Sobic007G089800 Sobic001G007800--Sobic007G089800 Sobic001G393700 Sobic001G393700 Sobic001G416700--Sobic001G393700 Sobic001G416700--Sobic007G187600 Sobic001G416700--Sobic007G143500 Sobic001G416700--Sobic004G340400 Sobic001G416700--Sobic001G291800 Sobic001G416700--Sobic004G307500 Sobic001G145400 Sobic001G145400 Sobic001G416700--Sobic001G145400 Sobic001G416700--Sobic001G334100 Sobic001G416700--Sobic001G168900 Sobic004G227100 Sobic004G227100 Sobic005G178700--Sobic004G227100 Sobic003G223500 Sobic003G223500 Sobic005G178700--Sobic003G223500 Sobic005G178700--Sobic007G143500 Sobic005G178700--Sobic004G235500 Sobic001G401400 Sobic001G401400 Sobic005G178700--Sobic001G401400 Sobic006G067900 Sobic006G067900 Sobic005G178700--Sobic006G067900 Sobic007G030600 Sobic007G030600 Sobic005G178700--Sobic007G030600 Sobic001G370300 Sobic001G370300 Sobic005G178700--Sobic001G370300 Sobic004G226900 Sobic004G226900 Sobic005G178700--Sobic004G226900 Sobic010G007100 Sobic010G007100 Sobic008G098600--Sobic010G007100 Sobic003G214300 Sobic003G214300 Sobic008G098600--Sobic003G214300 Sobic003G382500 Sobic003G382500 Sobic008G098600--Sobic003G382500 Sobic009G046700 Sobic009G046700 Sobic008G098600--Sobic009G046700 Sobic003G006400 Sobic003G006400 Sobic008G098600--Sobic003G006400 Sobic006G142400 Sobic006G142400 Sobic008G098600--Sobic006G142400 Sobic009G251200 Sobic009G251200 Sobic008G098600--Sobic009G251200 Sobic010G264000 Sobic010G264000 Sobic008G098600--Sobic010G264000 Sobic001G322600 Sobic001G322600 Sobic008G098600--Sobic001G322600 Sobic001G373000 Sobic001G373000 Sobic002G005000--Sobic001G373000 Sobic010G186600 Sobic010G186600 Sobic002G005000--Sobic010G186600 Sobic002G005000--Sobic001G291800 Sobic001G023800 Sobic001G023800 Sobic002G005000--Sobic001G023800 Sobic001G052400 Sobic001G052400 Sobic002G005000--Sobic001G052400 Sobic002G005000--Sobic004G307500 Sobic008G147200 Sobic008G147200 Sobic002G005000--Sobic008G147200 Sobic002G005000--Sobic004G340400 Sobic001G013300 Sobic001G013300 Sobic002G005000--Sobic001G013300 Sobic010G247400 Sobic010G247400 Sobic004G235500--Sobic010G247400 Sobic004G235500--Sobic005G178700 Sobic004G235500--Sobic007G143500 Sobic004G348100 Sobic004G348100 Sobic004G235500--Sobic004G348100 Sobic004G077000 Sobic004G077000 Sobic004G235500--Sobic004G077000 Sobic001G127100 Sobic001G127100 Sobic004G235500--Sobic001G127100 Sobic009G093400 Sobic009G093400 Sobic004G235500--Sobic009G093400 Sobic001G230200 Sobic001G230200 Sobic004G235500--Sobic001G230200 Sobic009G133400 Sobic009G133400 Sobic004G235500--Sobic009G133400
Octagon: transcription factors


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