Gene annotation
Transcriptome id Sobic.004G235500.1
Synonym Sb04g027820
Functional annotation mTERF family protein, expressed
UniProt C5XYR3
Pfam PF02536
Panther DB PTHR13068:SF35 PTHR13068
NCBI CDD KOG1267; Mitochondrial transcription termination factor, mTERF
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0003690; double-stranded DNA binding GO:0005739mitochondrion GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT5G07900 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os06g12100.1 : mTERF family protein, expressed
MaizeGDB (Corn) Zm00025a026349
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
2 Sobic.005G178700 OsFBX135 - F-box domain containing protein, expressed -
3 Sobic.007G143500 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
4 Sobic.004G348100 DNL zinc finger domain containing protein, putative, expressed K17808: ZIM17, DNLZ, mitochondrial protein import protein ZIM17
5 Sobic.004G077000 expressed protein -
6 Sobic.001G127100 alkaline phytoceramidase, putative, expressed K04711: ACER3, dihydroceramidase
7 Sobic.009G093400 - -
8 Sobic.001G230200 inosine triphosphate pyrophosphatase, putative, expressed K01519: inosine triphosphate pyrophosphatase
9 Sobic.009G133400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
10 Sobic.006G067900 expressed protein -
11 Sobic.001G043900 ORC2 - Putative origin recognition complex subunit 2, expressed K02604: origin recognition complex subunit 2
12 Sobic.009G225200 expressed protein -
13 Sobic.004G285200 expressed protein -
14 Sobic.004G346100 expressed protein -
15 Sobic.002G014600 OsFBX285 - F-box domain containing protein, expressed -
16 Sobic.008G098600 DNA-directed RNA polymerase III subunit RPC9, putative, expressed -
17 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
18 Sobic.006G242300 - -
19 Sobic.009G194801 - -
20 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E


Gene co-expression network
sample Sobic004G235500 Sobic004G235500 Sobic010G247400 Sobic010G247400 Sobic004G235500--Sobic010G247400 Sobic005G178700 Sobic005G178700 Sobic004G235500--Sobic005G178700 Sobic007G143500 Sobic007G143500 Sobic004G235500--Sobic007G143500 Sobic004G348100 Sobic004G348100 Sobic004G235500--Sobic004G348100 Sobic004G077000 Sobic004G077000 Sobic004G235500--Sobic004G077000 Sobic001G127100 Sobic001G127100 Sobic004G235500--Sobic001G127100 Sobic009G093400 Sobic009G093400 Sobic004G235500--Sobic009G093400 Sobic001G230200 Sobic001G230200 Sobic004G235500--Sobic001G230200 Sobic009G133400 Sobic009G133400 Sobic004G235500--Sobic009G133400 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic001G259000 Sobic001G259000 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic002G341800 Sobic002G341800 Sobic010G247400--Sobic002G341800 Sobic002G077900 Sobic002G077900 Sobic010G247400--Sobic002G077900 Sobic001G370300 Sobic001G370300 Sobic010G247400--Sobic001G370300 Sobic003G407600 Sobic003G407600 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic004G227100 Sobic004G227100 Sobic005G178700--Sobic004G227100 Sobic003G223500 Sobic003G223500 Sobic005G178700--Sobic003G223500 Sobic005G178700--Sobic007G143500 Sobic005G178700--Sobic004G235500 Sobic001G401400 Sobic001G401400 Sobic005G178700--Sobic001G401400 Sobic006G067900 Sobic006G067900 Sobic005G178700--Sobic006G067900 Sobic007G030600 Sobic007G030600 Sobic005G178700--Sobic007G030600 Sobic005G178700--Sobic001G370300 Sobic004G226900 Sobic004G226900 Sobic005G178700--Sobic004G226900 Sobic001G334100 Sobic001G334100 Sobic007G143500--Sobic001G334100 Sobic004G307500 Sobic004G307500 Sobic007G143500--Sobic004G307500 Sobic001G168900 Sobic001G168900 Sobic007G143500--Sobic001G168900 Sobic001G007800 Sobic001G007800 Sobic007G143500--Sobic001G007800 Sobic001G416700 Sobic001G416700 Sobic007G143500--Sobic001G416700 Sobic007G143500--Sobic005G178700 Sobic008G098600 Sobic008G098600 Sobic007G143500--Sobic008G098600 Sobic002G005000 Sobic002G005000 Sobic007G143500--Sobic002G005000 Sobic007G143500--Sobic004G235500 Sobic004G006300 Sobic004G006300 Sobic004G348100--Sobic004G006300 Sobic009G225200 Sobic009G225200 Sobic004G348100--Sobic009G225200 Sobic009G117300 Sobic009G117300 Sobic004G348100--Sobic009G117300 Sobic004G348100--Sobic009G133400 Sobic003G084700 Sobic003G084700 Sobic004G348100--Sobic003G084700 Sobic006G252300 Sobic006G252300 Sobic004G348100--Sobic006G252300 Sobic006G254700 Sobic006G254700 Sobic004G348100--Sobic006G254700 Sobic002G395801 Sobic002G395801 Sobic004G348100--Sobic002G395801 Sobic001G428400 Sobic001G428400 Sobic004G348100--Sobic001G428400 Sobic005G229000 Sobic005G229000 Sobic004G077000--Sobic005G229000 Sobic004G077000--Sobic001G428400 Sobic002G362300 Sobic002G362300 Sobic004G077000--Sobic002G362300 Sobic003G442000 Sobic003G442000 Sobic004G077000--Sobic003G442000 Sobic008G034600 Sobic008G034600 Sobic004G077000--Sobic008G034600 Sobic002G157200 Sobic002G157200 Sobic004G077000--Sobic002G157200 Sobic004G077000--Sobic009G225200 Sobic005G009200 Sobic005G009200 Sobic004G077000--Sobic005G009200 Sobic007G224900 Sobic007G224900 Sobic004G077000--Sobic007G224900 Sobic001G127100--Sobic001G168900 Sobic001G042200 Sobic001G042200 Sobic001G127100--Sobic001G042200 Sobic010G007100 Sobic010G007100 Sobic001G127100--Sobic010G007100 Sobic010G232900 Sobic010G232900 Sobic001G127100--Sobic010G232900 Sobic009G074700 Sobic009G074700 Sobic001G127100--Sobic009G074700 Sobic003G142700 Sobic003G142700 Sobic001G127100--Sobic003G142700 Sobic001G291800 Sobic001G291800 Sobic001G127100--Sobic001G291800 Sobic001G515000 Sobic001G515000 Sobic001G127100--Sobic001G515000 Sobic001G127100--Sobic008G098600 Sobic008G011100 Sobic008G011100 Sobic009G093400--Sobic008G011100 Sobic002G309200 Sobic002G309200 Sobic009G093400--Sobic002G309200 Sobic001G246500 Sobic001G246500 Sobic009G093400--Sobic001G246500 Sobic004G096500 Sobic004G096500 Sobic009G093400--Sobic004G096500 Sobic008G083000 Sobic008G083000 Sobic009G093400--Sobic008G083000 Sobic009G100050 Sobic009G100050 Sobic009G093400--Sobic009G100050 Sobic002G336800 Sobic002G336800 Sobic009G093400--Sobic002G336800 Sobic006G076300 Sobic006G076300 Sobic009G093400--Sobic006G076300 Sobic007G011600 Sobic007G011600 Sobic009G093400--Sobic007G011600 Sobic001G230200--Sobic003G407600 Sobic009G211700 Sobic009G211700 Sobic001G230200--Sobic009G211700 Sobic001G230200--Sobic010G247400 Sobic006G056600 Sobic006G056600 Sobic001G230200--Sobic006G056600 Sobic003G196800 Sobic003G196800 Sobic001G230200--Sobic003G196800 Sobic003G407800 Sobic003G407800 Sobic001G230200--Sobic003G407800 Sobic001G091900 Sobic001G091900 Sobic001G230200--Sobic001G091900 Sobic001G230200--Sobic001G401400 Sobic005G027300 Sobic005G027300 Sobic001G230200--Sobic005G027300 Sobic004G356900 Sobic004G356900 Sobic009G133400--Sobic004G356900 Sobic006G242300 Sobic006G242300 Sobic009G133400--Sobic006G242300 Sobic010G146600 Sobic010G146600 Sobic009G133400--Sobic010G146600 Sobic009G133400--Sobic004G348100 Sobic004G301900 Sobic004G301900 Sobic009G133400--Sobic004G301900 Sobic009G133400--Sobic010G247400 Sobic010G251100 Sobic010G251100 Sobic009G133400--Sobic010G251100 Sobic001G512600 Sobic001G512600 Sobic009G133400--Sobic001G512600 Sobic007G203700 Sobic007G203700 Sobic009G133400--Sobic007G203700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.