Gene annotation
Transcriptome id Sobic.004G285200.2,Sobic.004G285200.1
Synonym Sb04g032120
Functional annotation expressed protein
UniProt A0A194YS11 , A0A194YS06
Pfam PF02926
Panther DB PTHR13452 PTHR13452:SF9
NCBI CDD KOG3943; THUMP domain-containing proteins
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT1G09290 : -
RAP-DB (Rice) LOC_Os02g45090.1 : expressed protein
MaizeGDB (Corn) Zm00025a021479
Brachypodium -
Barley -
Wheat TraesCS6D02G236100 , TraesCS6D02G236100 , TraesCS6B02G270700 , TraesCS6B02G270700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
2 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
3 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
4 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
5 Sobic.002G144275 - -
6 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
7 Sobic.010G251100 - K03257: translation initiation factor 4A
8 Sobic.009G058500 phosphatidylinositolglycan-related, putative, expressed K03858: PIGH, phosphatidylinositol N-acetylglucosaminyltransferase subunit H
9 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
10 Sobic.002G306400 zinc finger family protein, putative, expressed -
11 Sobic.010G203300 paxneb-related protein, putative, expressed K11375: elongator complex protein 4
12 Sobic.003G439800 growth inhibition and differentiation-related protein 88, putative, expressed -
13 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
14 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
15 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
16 Sobic.004G235500 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
17 Sobic.001G499000 BTBP1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with pentapeptide repeats, expressed -
18 Sobic.006G067900 expressed protein -
19 Sobic.001G467300 40S ribosomal protein S3a, putative, expressed K02984: RP-S3Ae, small subunit ribosomal protein S3Ae
20 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1


Gene co-expression network
sample Sobic004G285200 Sobic004G285200 Sobic010G247400 Sobic010G247400 Sobic004G285200--Sobic010G247400 Sobic001G370300 Sobic001G370300 Sobic004G285200--Sobic001G370300 Sobic006G044600 Sobic006G044600 Sobic004G285200--Sobic006G044600 Sobic002G077900 Sobic002G077900 Sobic004G285200--Sobic002G077900 Sobic002G144275 Sobic002G144275 Sobic004G285200--Sobic002G144275 Sobic001G402300 Sobic001G402300 Sobic004G285200--Sobic001G402300 Sobic010G251100 Sobic010G251100 Sobic004G285200--Sobic010G251100 Sobic009G058500 Sobic009G058500 Sobic004G285200--Sobic009G058500 Sobic001G259000 Sobic001G259000 Sobic004G285200--Sobic001G259000 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic002G341800 Sobic002G341800 Sobic010G247400--Sobic002G341800 Sobic010G247400--Sobic002G077900 Sobic010G247400--Sobic001G370300 Sobic003G407600 Sobic003G407600 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic001G370300--Sobic002G077900 Sobic002G177500 Sobic002G177500 Sobic001G370300--Sobic002G177500 Sobic006G245700 Sobic006G245700 Sobic001G370300--Sobic006G245700 Sobic001G370300--Sobic010G247400 Sobic001G285300 Sobic001G285300 Sobic001G370300--Sobic001G285300 Sobic003G439800 Sobic003G439800 Sobic001G370300--Sobic003G439800 Sobic001G023800 Sobic001G023800 Sobic001G370300--Sobic001G023800 Sobic006G252100 Sobic006G252100 Sobic001G370300--Sobic006G252100 Sobic004G057800 Sobic004G057800 Sobic001G370300--Sobic004G057800 Sobic006G044600--Sobic002G341800 Sobic004G194900 Sobic004G194900 Sobic006G044600--Sobic004G194900 Sobic002G394600 Sobic002G394600 Sobic006G044600--Sobic002G394600 Sobic007G184500 Sobic007G184500 Sobic006G044600--Sobic007G184500 Sobic007G166400 Sobic007G166400 Sobic006G044600--Sobic007G166400 Sobic001G458700 Sobic001G458700 Sobic006G044600--Sobic001G458700 Sobic006G044600--Sobic002G077900 Sobic006G044600--Sobic009G058500 Sobic008G055900 Sobic008G055900 Sobic006G044600--Sobic008G055900 Sobic001G168900 Sobic001G168900 Sobic002G077900--Sobic001G168900 Sobic001G226000 Sobic001G226000 Sobic002G077900--Sobic001G226000 Sobic002G077900--Sobic001G370300 Sobic003G420700 Sobic003G420700 Sobic002G077900--Sobic003G420700 Sobic004G307500 Sobic004G307500 Sobic002G077900--Sobic004G307500 Sobic002G077900--Sobic009G058500 Sobic009G258400 Sobic009G258400 Sobic002G077900--Sobic009G258400 Sobic002G077900--Sobic006G044600 Sobic010G193800 Sobic010G193800 Sobic002G077900--Sobic010G193800 Sobic002G144275--Sobic001G402300 Sobic010G179700 Sobic010G179700 Sobic002G144275--Sobic010G179700 Sobic006G043700 Sobic006G043700 Sobic002G144275--Sobic006G043700 Sobic008G137600 Sobic008G137600 Sobic002G144275--Sobic008G137600 Sobic002G131400 Sobic002G131400 Sobic002G144275--Sobic002G131400 Sobic002G116500 Sobic002G116500 Sobic002G144275--Sobic002G116500 Sobic003G273400 Sobic003G273400 Sobic002G144275--Sobic003G273400 Sobic007G220900 Sobic007G220900 Sobic002G144275--Sobic007G220900 Sobic008G110500 Sobic008G110500 Sobic002G144275--Sobic008G110500 Sobic001G402300--Sobic008G137600 Sobic001G226100 Sobic001G226100 Sobic001G402300--Sobic001G226100 Sobic004G141700 Sobic004G141700 Sobic001G402300--Sobic004G141700 Sobic001G402300--Sobic010G251100 Sobic007G118000 Sobic007G118000 Sobic001G402300--Sobic007G118000 Sobic009G232400 Sobic009G232400 Sobic001G402300--Sobic009G232400 Sobic002G413400 Sobic002G413400 Sobic001G402300--Sobic002G413400 Sobic001G529000 Sobic001G529000 Sobic001G402300--Sobic001G529000 Sobic001G402300--Sobic001G285300 Sobic010G251100--Sobic001G226100 Sobic010G251100--Sobic001G402300 Sobic003G226500 Sobic003G226500 Sobic010G251100--Sobic003G226500 Sobic010G251100--Sobic009G232400 Sobic007G205000 Sobic007G205000 Sobic010G251100--Sobic007G205000 Sobic008G004400 Sobic008G004400 Sobic010G251100--Sobic008G004400 Sobic006G278700 Sobic006G278700 Sobic010G251100--Sobic006G278700 Sobic010G012600 Sobic010G012600 Sobic010G251100--Sobic010G012600 Sobic010G251100--Sobic010G193800 Sobic001G360200 Sobic001G360200 Sobic009G058500--Sobic001G360200 Sobic009G058500--Sobic007G184500 Sobic010G018700 Sobic010G018700 Sobic009G058500--Sobic010G018700 Sobic009G058500--Sobic002G077900 Sobic009G058500--Sobic003G439800 Sobic003G074400 Sobic003G074400 Sobic009G058500--Sobic003G074400 Sobic009G058500--Sobic006G278700 Sobic009G058500--Sobic006G044600 Sobic004G346100 Sobic004G346100 Sobic009G058500--Sobic004G346100 Sobic009G143800 Sobic009G143800 Sobic001G259000--Sobic009G143800 Sobic004G156800 Sobic004G156800 Sobic001G259000--Sobic004G156800 Sobic006G270600 Sobic006G270600 Sobic001G259000--Sobic006G270600 Sobic009G101200 Sobic009G101200 Sobic001G259000--Sobic009G101200 Sobic001G145400 Sobic001G145400 Sobic001G259000--Sobic001G145400 Sobic008G160000 Sobic008G160000 Sobic001G259000--Sobic008G160000 Sobic007G039400 Sobic007G039400 Sobic001G259000--Sobic007G039400 Sobic004G340400 Sobic004G340400 Sobic001G259000--Sobic004G340400 Sobic009G138700 Sobic009G138700 Sobic001G259000--Sobic009G138700
Octagon: transcription factors


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