Gene annotation
Transcriptome id Sobic.001G370300.1
Synonym LIS, EMB2776, Sb01g035220
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5WZR9
Pfam PF08799 PF00400
Panther DB PTHR19846
NCBI CDD -
KEGG Orthology K12662; PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G41500 : WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related
RAP-DB (Rice) LOC_Os03g23935.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a002490
Brachypodium KQK21664 , KQK21663
Barley HORVU4Hr1G034750.1 , HORVU4Hr1G034750.2 , HORVU2Hr1G032990.9 , HORVU2Hr1G032990.8 , HORVU2Hr1G032990.7 , HORVU2Hr1G032990.6 , HORVU2Hr1G032990.5 , HORVU2Hr1G032990.4 , HORVU2Hr1G032990.3 , HORVU2Hr1G032990.2 , HORVU2Hr1G032990.1 , HORVU2Hr1G032990.12 , HORVU2Hr1G032990.11 , HORVU2Hr1G032990.10
Wheat TraesCS4A02G149100 , TraesCS2A02G175200 , TraesCS4D02G160600 , TraesCS2D02G182600 , TraesCS4B02G163800
Populus PNT29722 , PNT29721


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cDNA sequences
Sobic.001G370300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
2 Sobic.002G177500 expressed protein -
3 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
4 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
5 Sobic.001G285300 expressed protein -
6 Sobic.003G439800 growth inhibition and differentiation-related protein 88, putative, expressed -
7 Sobic.001G023800 expressed protein -
8 Sobic.006G252100 mediator of RNA polymerase II transcription subunit 7, putative, expressed K15148: mediator of RNA polymerase II transcription subunit 7
9 Sobic.004G057800 URED, putative, expressed K03190: ureD, urease accessory protein
10 Sobic.009G040500 glioma tumor suppressor candidate region gene 2 protein, putative, expressed K14840: NOP53, nucleolar protein 53
11 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
12 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
13 Sobic.003G307900 BSD domain containing protein, expressed -
14 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
15 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
16 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
17 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
18 Sobic.003G420700 expressed protein -
19 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
20 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1


Gene co-expression network
sample Sobic001G370300 Sobic001G370300 Sobic002G077900 Sobic002G077900 Sobic001G370300--Sobic002G077900 Sobic002G177500 Sobic002G177500 Sobic001G370300--Sobic002G177500 Sobic006G245700 Sobic006G245700 Sobic001G370300--Sobic006G245700 Sobic010G247400 Sobic010G247400 Sobic001G370300--Sobic010G247400 Sobic001G285300 Sobic001G285300 Sobic001G370300--Sobic001G285300 Sobic003G439800 Sobic003G439800 Sobic001G370300--Sobic003G439800 Sobic001G023800 Sobic001G023800 Sobic001G370300--Sobic001G023800 Sobic006G252100 Sobic006G252100 Sobic001G370300--Sobic006G252100 Sobic004G057800 Sobic004G057800 Sobic001G370300--Sobic004G057800 Sobic001G168900 Sobic001G168900 Sobic002G077900--Sobic001G168900 Sobic001G226000 Sobic001G226000 Sobic002G077900--Sobic001G226000 Sobic002G077900--Sobic001G370300 Sobic003G420700 Sobic003G420700 Sobic002G077900--Sobic003G420700 Sobic004G307500 Sobic004G307500 Sobic002G077900--Sobic004G307500 Sobic009G058500 Sobic009G058500 Sobic002G077900--Sobic009G058500 Sobic009G258400 Sobic009G258400 Sobic002G077900--Sobic009G258400 Sobic006G044600 Sobic006G044600 Sobic002G077900--Sobic006G044600 Sobic010G193800 Sobic010G193800 Sobic002G077900--Sobic010G193800 Sobic002G177500--Sobic001G370300 Sobic004G285000 Sobic004G285000 Sobic002G177500--Sobic004G285000 Sobic001G168100 Sobic001G168100 Sobic002G177500--Sobic001G168100 Sobic003G436600 Sobic003G436600 Sobic002G177500--Sobic003G436600 Sobic001G013300 Sobic001G013300 Sobic002G177500--Sobic001G013300 Sobic002G223300 Sobic002G223300 Sobic002G177500--Sobic002G223300 Sobic002G399200 Sobic002G399200 Sobic002G177500--Sobic002G399200 Sobic006G226300 Sobic006G226300 Sobic002G177500--Sobic006G226300 Sobic009G151200 Sobic009G151200 Sobic002G177500--Sobic009G151200 Sobic004G256300 Sobic004G256300 Sobic006G245700--Sobic004G256300 Sobic006G245700--Sobic001G370300 Sobic008G125000 Sobic008G125000 Sobic006G245700--Sobic008G125000 Sobic003G274400 Sobic003G274400 Sobic006G245700--Sobic003G274400 Sobic001G115500 Sobic001G115500 Sobic006G245700--Sobic001G115500 Sobic002G394800 Sobic002G394800 Sobic006G245700--Sobic002G394800 Sobic001G436300 Sobic001G436300 Sobic006G245700--Sobic001G436300 Sobic003G221500 Sobic003G221500 Sobic006G245700--Sobic003G221500 Sobic001G157600 Sobic001G157600 Sobic006G245700--Sobic001G157600 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic001G259000 Sobic001G259000 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic002G341800 Sobic002G341800 Sobic010G247400--Sobic002G341800 Sobic010G247400--Sobic002G077900 Sobic010G247400--Sobic001G370300 Sobic003G407600 Sobic003G407600 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic008G111700 Sobic008G111700 Sobic001G285300--Sobic008G111700 Sobic001G532100 Sobic001G532100 Sobic001G285300--Sobic001G532100 Sobic006G143500 Sobic006G143500 Sobic001G285300--Sobic006G143500 Sobic002G044000 Sobic002G044000 Sobic001G285300--Sobic002G044000 Sobic001G036700 Sobic001G036700 Sobic001G285300--Sobic001G036700 Sobic001G126200 Sobic001G126200 Sobic001G285300--Sobic001G126200 Sobic001G285300--Sobic003G420700 Sobic001G402300 Sobic001G402300 Sobic001G285300--Sobic001G402300 Sobic006G094600 Sobic006G094600 Sobic001G285300--Sobic006G094600 Sobic001G143500 Sobic001G143500 Sobic003G439800--Sobic001G143500 Sobic006G252700 Sobic006G252700 Sobic003G439800--Sobic006G252700 Sobic006G278700 Sobic006G278700 Sobic003G439800--Sobic006G278700 Sobic010G018700 Sobic010G018700 Sobic003G439800--Sobic010G018700 Sobic002G268400 Sobic002G268400 Sobic003G439800--Sobic002G268400 Sobic001G142100 Sobic001G142100 Sobic003G439800--Sobic001G142100 Sobic003G439800--Sobic009G058500 Sobic003G401100 Sobic003G401100 Sobic003G439800--Sobic003G401100 Sobic010G279700 Sobic010G279700 Sobic003G439800--Sobic010G279700 Sobic010G266500 Sobic010G266500 Sobic001G023800--Sobic010G266500 Sobic007G187600 Sobic007G187600 Sobic001G023800--Sobic007G187600 Sobic010G186600 Sobic010G186600 Sobic001G023800--Sobic010G186600 Sobic002G005000 Sobic002G005000 Sobic001G023800--Sobic002G005000 Sobic001G373000 Sobic001G373000 Sobic001G023800--Sobic001G373000 Sobic003G427100 Sobic003G427100 Sobic001G023800--Sobic003G427100 Sobic001G023800--Sobic001G013300 Sobic008G164600 Sobic008G164600 Sobic001G023800--Sobic008G164600 Sobic001G291800 Sobic001G291800 Sobic001G023800--Sobic001G291800 Sobic006G252100--Sobic002G268400 Sobic001G152000 Sobic001G152000 Sobic006G252100--Sobic001G152000 Sobic006G252100--Sobic009G033900 Sobic006G216000 Sobic006G216000 Sobic006G252100--Sobic006G216000 Sobic003G220700 Sobic003G220700 Sobic006G252100--Sobic003G220700 Sobic006G252100--Sobic006G094600 Sobic001G226100 Sobic001G226100 Sobic006G252100--Sobic001G226100 Sobic004G074300 Sobic004G074300 Sobic006G252100--Sobic004G074300 Sobic006G252100--Sobic001G370300 Sobic001G390500 Sobic001G390500 Sobic004G057800--Sobic001G390500 Sobic004G057800--Sobic009G033900 Sobic001G136900 Sobic001G136900 Sobic004G057800--Sobic001G136900 Sobic001G309100 Sobic001G309100 Sobic004G057800--Sobic001G309100 Sobic001G038100 Sobic001G038100 Sobic004G057800--Sobic001G038100 Sobic003G311000 Sobic003G311000 Sobic004G057800--Sobic003G311000 Sobic007G205000 Sobic007G205000 Sobic004G057800--Sobic007G205000 Sobic004G057800--Sobic001G370300 Sobic006G183000 Sobic006G183000 Sobic004G057800--Sobic006G183000
Octagon: transcription factors


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