Gene annotation
Transcriptome id Sobic.002G394800.1
Synonym CHC1, Sb02g041010
Functional annotation SWIB/MDM2 domain containing protein, expressed
UniProt A0A1B6QFW1
Pfam PF02201
Panther DB PTHR13844 PTHR13844:SF13
NCBI CDD KOG2570; SWI/SNF transcription activation complex subunit
KEGG Orthology K11650; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G14170 : SWIB/MDM2 domain superfamily protein
RAP-DB (Rice) LOC_Os04g31320.1 : SWIB/MDM2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048563 , Zm00025a015312 , Zm00025a048952 , Zm00025a050116
Brachypodium KQJ82242 , PNT60896
Barley -
Wheat TraesCS2A02G281500
Populus -


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cDNA sequences
Sobic.002G394800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G233300 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
2 Sobic.002G143900 OsFBL19 - F-box domain and LRR containing protein, expressed K10273: F-box and leucine-rich repeat protein 7
3 Sobic.006G233000 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
4 Sobic.002G280600 hydroxyproline-rich glycoprotein family protein, putative, expressed -
5 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
6 Sobic.006G272200 cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
7 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
8 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
9 Sobic.002G430900 PWWP domain containing protein, expressed -
10 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
11 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
12 Sobic.010G202500 C2 domain containing protein, putative, expressed -
13 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
14 Sobic.009G056300 PHD finger protein, putative, expressed -
15 Sobic.002G318600 RNA recognition motif containing protein, putative, expressed -
16 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
17 Sobic.003G439800 growth inhibition and differentiation-related protein 88, putative, expressed -
18 Sobic.004G027000 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
19 Sobic.007G134100 expressed protein -
20 Sobic.003G247900 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D


Gene co-expression network
sample Sobic002G394800 Sobic002G394800 Sobic006G233300 Sobic006G233300 Sobic002G394800--Sobic006G233300 Sobic002G143900 Sobic002G143900 Sobic002G394800--Sobic002G143900 Sobic006G233000 Sobic006G233000 Sobic002G394800--Sobic006G233000 Sobic002G280600 Sobic002G280600 Sobic002G394800--Sobic002G280600 Sobic006G245700 Sobic006G245700 Sobic002G394800--Sobic006G245700 Sobic006G272200 Sobic006G272200 Sobic002G394800--Sobic006G272200 Sobic001G370300 Sobic001G370300 Sobic002G394800--Sobic001G370300 Sobic004G249300 Sobic004G249300 Sobic002G394800--Sobic004G249300 Sobic002G430900 Sobic002G430900 Sobic002G394800--Sobic002G430900 Sobic006G010000 Sobic006G010000 Sobic006G233300--Sobic006G010000 Sobic006G233300--Sobic002G143900 Sobic006G233300--Sobic006G233000 Sobic003G158700 Sobic003G158700 Sobic006G233300--Sobic003G158700 Sobic006G233300--Sobic002G394800 Sobic003G099300 Sobic003G099300 Sobic006G233300--Sobic003G099300 Sobic010G239800 Sobic010G239800 Sobic006G233300--Sobic010G239800 Sobic010G247400 Sobic010G247400 Sobic006G233300--Sobic010G247400 Sobic006G233300--Sobic002G280600 Sobic002G143900--Sobic006G233300 Sobic002G143900--Sobic002G280600 Sobic002G143900--Sobic002G394800 Sobic007G027700 Sobic007G027700 Sobic002G143900--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic002G143900--Sobic001G143500 Sobic006G044000 Sobic006G044000 Sobic002G143900--Sobic006G044000 Sobic001G526300 Sobic001G526300 Sobic002G143900--Sobic001G526300 Sobic010G232900 Sobic010G232900 Sobic002G143900--Sobic010G232900 Sobic008G139700 Sobic008G139700 Sobic002G143900--Sobic008G139700 Sobic006G233000--Sobic006G010000 Sobic010G085200 Sobic010G085200 Sobic006G233000--Sobic010G085200 Sobic006G233000--Sobic006G233300 Sobic004G155600 Sobic004G155600 Sobic006G233000--Sobic004G155600 Sobic001G259000 Sobic001G259000 Sobic006G233000--Sobic001G259000 Sobic006G233000--Sobic002G394800 Sobic003G439800 Sobic003G439800 Sobic006G233000--Sobic003G439800 Sobic006G270600 Sobic006G270600 Sobic006G233000--Sobic006G270600 Sobic007G134100 Sobic007G134100 Sobic006G233000--Sobic007G134100 Sobic002G280600--Sobic002G143900 Sobic002G280600--Sobic002G394800 Sobic002G280600--Sobic010G232900 Sobic002G280600--Sobic007G027700 Sobic003G123000 Sobic003G123000 Sobic002G280600--Sobic003G123000 Sobic002G280600--Sobic006G233300 Sobic002G280600--Sobic010G239800 Sobic003G273400 Sobic003G273400 Sobic002G280600--Sobic003G273400 Sobic002G280600--Sobic001G526300 Sobic004G256300 Sobic004G256300 Sobic006G245700--Sobic004G256300 Sobic006G245700--Sobic001G370300 Sobic008G125000 Sobic008G125000 Sobic006G245700--Sobic008G125000 Sobic003G274400 Sobic003G274400 Sobic006G245700--Sobic003G274400 Sobic001G115500 Sobic001G115500 Sobic006G245700--Sobic001G115500 Sobic006G245700--Sobic002G394800 Sobic001G436300 Sobic001G436300 Sobic006G245700--Sobic001G436300 Sobic003G221500 Sobic003G221500 Sobic006G245700--Sobic003G221500 Sobic001G157600 Sobic001G157600 Sobic006G245700--Sobic001G157600 Sobic006G272200--Sobic010G085200 Sobic003G119400 Sobic003G119400 Sobic006G272200--Sobic003G119400 Sobic001G362300 Sobic001G362300 Sobic006G272200--Sobic001G362300 Sobic006G272200--Sobic002G394800 Sobic009G007700 Sobic009G007700 Sobic006G272200--Sobic009G007700 Sobic004G074300 Sobic004G074300 Sobic006G272200--Sobic004G074300 Sobic006G272200--Sobic001G370300 Sobic006G272200--Sobic006G233000 Sobic008G009600 Sobic008G009600 Sobic006G272200--Sobic008G009600 Sobic002G077900 Sobic002G077900 Sobic001G370300--Sobic002G077900 Sobic002G177500 Sobic002G177500 Sobic001G370300--Sobic002G177500 Sobic001G370300--Sobic006G245700 Sobic001G370300--Sobic010G247400 Sobic001G285300 Sobic001G285300 Sobic001G370300--Sobic001G285300 Sobic001G370300--Sobic003G439800 Sobic001G023800 Sobic001G023800 Sobic001G370300--Sobic001G023800 Sobic006G252100 Sobic006G252100 Sobic001G370300--Sobic006G252100 Sobic004G057800 Sobic004G057800 Sobic001G370300--Sobic004G057800 Sobic002G341800 Sobic002G341800 Sobic004G249300--Sobic002G341800 Sobic009G201800 Sobic009G201800 Sobic004G249300--Sobic009G201800 Sobic004G249300--Sobic001G115500 Sobic004G249300--Sobic002G077900 Sobic008G083400 Sobic008G083400 Sobic004G249300--Sobic008G083400 Sobic004G249300--Sobic010G247400 Sobic003G118400 Sobic003G118400 Sobic004G249300--Sobic003G118400 Sobic009G102900 Sobic009G102900 Sobic004G249300--Sobic009G102900 Sobic004G249300--Sobic001G370300 Sobic007G125700 Sobic007G125700 Sobic002G430900--Sobic007G125700 Sobic002G219900 Sobic002G219900 Sobic002G430900--Sobic002G219900 Sobic010G269300 Sobic010G269300 Sobic002G430900--Sobic010G269300 Sobic010G149600 Sobic010G149600 Sobic002G430900--Sobic010G149600 Sobic009G192500 Sobic009G192500 Sobic002G430900--Sobic009G192500 Sobic002G017900 Sobic002G017900 Sobic002G430900--Sobic002G017900 Sobic001G395200 Sobic001G395200 Sobic002G430900--Sobic001G395200 Sobic009G006900 Sobic009G006900 Sobic002G430900--Sobic009G006900 Sobic005G120700 Sobic005G120700 Sobic002G430900--Sobic005G120700
Octagon: transcription factors


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