Gene annotation
Transcriptome id Sobic.004G027000.2,Sobic.004G027000.1
Synonym Sb04g002390, SINAT2
Functional annotation seven in absentia protein family domain containing protein, expressed
UniProt C5XTS0
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF34
NCBI CDD KOG3002; Zn finger protein
KEGG Orthology K04506; E3 ubiquitin-protein ligase SIAH1
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G58040 : seven in absentia of Arabidopsis 2
RAP-DB (Rice) LOC_Os02g03620.1 : seven in absentia protein family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a002526
Brachypodium KQJ93104
Barley HORVU6Hr1G016120.8 , HORVU6Hr1G016120.9 , HORVU6Hr1G016120.4 , HORVU6Hr1G016120.5 , HORVU6Hr1G016120.6 , HORVU6Hr1G016120.7 , HORVU6Hr1G016120.1 , HORVU6Hr1G016120.2 , HORVU6Hr1G016120.3 , HORVU6Hr1G016120.14 , HORVU6Hr1G016120.12 , HORVU6Hr1G016120.13 , HORVU6Hr1G016120.10 , HORVU6Hr1G016120.11
Wheat TraesCSU02G019700 , TraesCS6A02G086800
Populus -


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cDNA sequences
Sobic.004G027000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G225300 e2f-associated phosphoprotein, putative, expressed -
2 Sobic.004G206300 pre-mRNA-splicing factor ISY1, putative, expressed K12870: pre-mRNA-splicing factor ISY1
3 Sobic.002G139000 OsFBX237 - F-box domain containing protein, expressed -
4 Sobic.009G056300 PHD finger protein, putative, expressed -
5 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
6 Sobic.001G422700 "similar to Zinc finger family protein, putative, expressed"(PubMedID : 29862293)@Salt and drought-induced ring finger 1(PubMedID : 26320239)@zinc finger, C3HC4 type domain containing protein, expressed K16283: E3 ubiquitin-protein ligase SDIR1
7 Sobic.001G280400 ankyrin repeat domain-containing protein 28, putative, expressed -
8 Sobic.005G164500 expressed protein -
9 Sobic.004G184000 SFT2, putative, expressed -
10 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
11 Sobic.007G159200 PWWP domain containing protein, expressed -
12 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
13 Sobic.002G231300 CAMK_CAMK_like.38 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
14 Sobic.003G158700 exocyst complex component 6, putative, expressed -
15 Sobic.006G188800 H-BTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
16 Sobic.002G259400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
17 Sobic.010G202500 C2 domain containing protein, putative, expressed -
18 Sobic.001G120900 photoperiodic flowering time gene(PubMedID : 22394582)@-(PubMedID : 23108465)@GRAS family transcription factor domain containing protein, expressed K14494: DELLA protein
19 Sobic.010G001800 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
20 Sobic.002G427300 protein phosphotase protein, putative, expressed -


Gene co-expression network
sample Sobic004G027000 Sobic004G027000 Sobic004G225300 Sobic004G225300 Sobic004G027000--Sobic004G225300 Sobic004G206300 Sobic004G206300 Sobic004G027000--Sobic004G206300 Sobic002G139000 Sobic002G139000 Sobic004G027000--Sobic002G139000 Sobic009G056300 Sobic009G056300 Sobic004G027000--Sobic009G056300 Sobic002G394800 Sobic002G394800 Sobic004G027000--Sobic002G394800 Sobic001G422700 Sobic001G422700 Sobic004G027000--Sobic001G422700 Sobic001G280400 Sobic001G280400 Sobic004G027000--Sobic001G280400 Sobic005G164500 Sobic005G164500 Sobic004G027000--Sobic005G164500 Sobic004G184000 Sobic004G184000 Sobic004G027000--Sobic004G184000 Sobic004G225300--Sobic004G027000 Sobic004G225300--Sobic001G422700 Sobic004G225300--Sobic002G394800 Sobic004G225300--Sobic004G206300 Sobic004G225300--Sobic009G056300 Sobic004G212700 Sobic004G212700 Sobic004G225300--Sobic004G212700 Sobic004G225300--Sobic002G139000 Sobic006G252100 Sobic006G252100 Sobic004G225300--Sobic006G252100 Sobic006G179800 Sobic006G179800 Sobic004G225300--Sobic006G179800 Sobic004G206300--Sobic004G212700 Sobic004G206300--Sobic004G027000 Sobic004G206300--Sobic009G056300 Sobic004G129600 Sobic004G129600 Sobic004G206300--Sobic004G129600 Sobic009G031500 Sobic009G031500 Sobic004G206300--Sobic009G031500 Sobic008G125000 Sobic008G125000 Sobic004G206300--Sobic008G125000 Sobic004G206300--Sobic004G225300 Sobic001G335500 Sobic001G335500 Sobic004G206300--Sobic001G335500 Sobic001G099800 Sobic001G099800 Sobic004G206300--Sobic001G099800 Sobic002G139000--Sobic004G027000 Sobic002G139000--Sobic001G422700 Sobic001G217100 Sobic001G217100 Sobic002G139000--Sobic001G217100 Sobic006G167300 Sobic006G167300 Sobic002G139000--Sobic006G167300 Sobic006G067700 Sobic006G067700 Sobic002G139000--Sobic006G067700 Sobic002G139000--Sobic009G056300 Sobic001G296800 Sobic001G296800 Sobic002G139000--Sobic001G296800 Sobic010G217100 Sobic010G217100 Sobic002G139000--Sobic010G217100 Sobic002G139000--Sobic004G225300 Sobic009G056300--Sobic008G125000 Sobic009G056300--Sobic004G206300 Sobic002G224700 Sobic002G224700 Sobic009G056300--Sobic002G224700 Sobic009G194300 Sobic009G194300 Sobic009G056300--Sobic009G194300 Sobic001G041200 Sobic001G041200 Sobic009G056300--Sobic001G041200 Sobic001G080000 Sobic001G080000 Sobic009G056300--Sobic001G080000 Sobic009G056300--Sobic004G027000 Sobic009G056300--Sobic002G394800 Sobic001G152000 Sobic001G152000 Sobic009G056300--Sobic001G152000 Sobic006G233300 Sobic006G233300 Sobic002G394800--Sobic006G233300 Sobic002G143900 Sobic002G143900 Sobic002G394800--Sobic002G143900 Sobic006G233000 Sobic006G233000 Sobic002G394800--Sobic006G233000 Sobic002G280600 Sobic002G280600 Sobic002G394800--Sobic002G280600 Sobic006G245700 Sobic006G245700 Sobic002G394800--Sobic006G245700 Sobic006G272200 Sobic006G272200 Sobic002G394800--Sobic006G272200 Sobic001G370300 Sobic001G370300 Sobic002G394800--Sobic001G370300 Sobic004G249300 Sobic004G249300 Sobic002G394800--Sobic004G249300 Sobic002G430900 Sobic002G430900 Sobic002G394800--Sobic002G430900 Sobic001G422700--Sobic002G139000 Sobic001G010600 Sobic001G010600 Sobic001G422700--Sobic001G010600 Sobic001G507400 Sobic001G507400 Sobic001G422700--Sobic001G507400 Sobic003G259400 Sobic003G259400 Sobic001G422700--Sobic003G259400 Sobic003G247900 Sobic003G247900 Sobic001G422700--Sobic003G247900 Sobic001G422700--Sobic004G027000 Sobic001G422700--Sobic004G225300 Sobic001G329300 Sobic001G329300 Sobic001G422700--Sobic001G329300 Sobic002G272600 Sobic002G272600 Sobic001G422700--Sobic002G272600 Sobic001G280400--Sobic005G164500 Sobic004G117800 Sobic004G117800 Sobic001G280400--Sobic004G117800 Sobic008G051100 Sobic008G051100 Sobic001G280400--Sobic008G051100 Sobic005G100900 Sobic005G100900 Sobic001G280400--Sobic005G100900 Sobic001G280400--Sobic001G099800 Sobic003G209400 Sobic003G209400 Sobic001G280400--Sobic003G209400 Sobic001G280400--Sobic004G027000 Sobic004G136500 Sobic004G136500 Sobic001G280400--Sobic004G136500 Sobic001G132900 Sobic001G132900 Sobic001G280400--Sobic001G132900 Sobic005G164500--Sobic001G280400 Sobic005G164500--Sobic004G027000 Sobic005G164500--Sobic004G117800 Sobic007G013300 Sobic007G013300 Sobic005G164500--Sobic007G013300 Sobic010G085200 Sobic010G085200 Sobic005G164500--Sobic010G085200 Sobic005G164500--Sobic002G394800 Sobic001G469200 Sobic001G469200 Sobic005G164500--Sobic001G469200 Sobic002G058700 Sobic002G058700 Sobic005G164500--Sobic002G058700 Sobic001G426100 Sobic001G426100 Sobic005G164500--Sobic001G426100 Sobic007G165300 Sobic007G165300 Sobic004G184000--Sobic007G165300 Sobic005G129201 Sobic005G129201 Sobic004G184000--Sobic005G129201 Sobic003G326900 Sobic003G326900 Sobic004G184000--Sobic003G326900 Sobic010G258000 Sobic010G258000 Sobic004G184000--Sobic010G258000 Sobic001G451901 Sobic001G451901 Sobic004G184000--Sobic001G451901 Sobic003G348200 Sobic003G348200 Sobic004G184000--Sobic003G348200 Sobic007G217400 Sobic007G217400 Sobic004G184000--Sobic007G217400 Sobic001G110300 Sobic001G110300 Sobic004G184000--Sobic001G110300 Sobic001G116000 Sobic001G116000 Sobic004G184000--Sobic001G116000
Octagon: transcription factors


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