Gene annotation
Transcriptome id Sobic.001G120900.1
Synonym GAI, Dwarf8, d8, RGA2, SbD8;Dwarf 8, Sb01g010660
Functional annotation photoperiodic flowering time gene (PubMedID : 22394582)
- (PubMedID : 23108465)
GRAS family transcription factor domain containing protein, expressed
UniProt B5U4I1 , B2LUJ1 , C5WNR2 , B5U4I7 , I2AW59 , B5U4H7 , A0A0A0US94 , B5U4I3 , B2LUH7 , B5U4H8 , B2LUH8 , B5U4H5 , A0A0A0URT6 , B5U4H6 , B2LUI5 , B2LUH6
Pfam PF12041 PF03514
Panther DB PTHR31636 PTHR31636:SF47
NCBI CDD -
KEGG Orthology K14494; DELLA protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G14920 : GRAS family transcription factor family protein
RAP-DB (Rice) LOC_Os03g49990.1 : GRAS family transcription factor domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017028 , Zm00025a007785
Brachypodium KQK13578
Barley HORVU4Hr1G006930.1 , HORVU4Hr1G006930.2 , HORVU4Hr1G006930.3 , HORVU4Hr1G006930.4
Wheat TraesCS4A02G466700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G120900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G229900 heat shock protein DnaJ, putative, expressed -
2 Sobic.004G027000 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
3 Sobic.002G203500 protein binding protein, putative, expressed -
4 Sobic.006G046600 expressed protein -
5 Sobic.004G229100 OsFBX61 - F-box domain containing protein, expressed -
6 Sobic.009G164900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
7 Sobic.001G217100 double-stranded RNA binding motif containing protein, expressed -
8 Sobic.001G382400 TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
9 Sobic.006G162800 expressed protein -
10 Sobic.010G173700 tetraspanin family protein, putative, expressed -
11 Sobic.005G022300 - -
12 Sobic.004G352100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
13 Sobic.008G038200 TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed -
14 Sobic.010G190400 ZOS6-05 - C2H2 zinc finger protein, expressed -
15 Sobic.004G206300 pre-mRNA-splicing factor ISY1, putative, expressed K12870: pre-mRNA-splicing factor ISY1
16 Sobic.003G340900 SAG20, putative, expressed -
17 Sobic.002G280600 hydroxyproline-rich glycoprotein family protein, putative, expressed -
18 Sobic.003G027800 protein kinase family protein, putative, expressed -
19 Sobic.002G425200 expressed protein -
20 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G120900 Sobic001G120900 Sobic002G229900 Sobic002G229900 Sobic001G120900--Sobic002G229900 Sobic004G027000 Sobic004G027000 Sobic001G120900--Sobic004G027000 Sobic002G203500 Sobic002G203500 Sobic001G120900--Sobic002G203500 Sobic006G046600 Sobic006G046600 Sobic001G120900--Sobic006G046600 Sobic004G229100 Sobic004G229100 Sobic001G120900--Sobic004G229100 Sobic009G164900 Sobic009G164900 Sobic001G120900--Sobic009G164900 Sobic001G217100 Sobic001G217100 Sobic001G120900--Sobic001G217100 Sobic001G382400 Sobic001G382400 Sobic001G120900--Sobic001G382400 Sobic006G162800 Sobic006G162800 Sobic001G120900--Sobic006G162800 Sobic002G430900 Sobic002G430900 Sobic002G229900--Sobic002G430900 Sobic002G219900 Sobic002G219900 Sobic002G229900--Sobic002G219900 Sobic007G125700 Sobic007G125700 Sobic002G229900--Sobic007G125700 Sobic004G111000 Sobic004G111000 Sobic002G229900--Sobic004G111000 Sobic002G229900--Sobic001G120900 Sobic002G394800 Sobic002G394800 Sobic002G229900--Sobic002G394800 Sobic010G149600 Sobic010G149600 Sobic002G229900--Sobic010G149600 Sobic009G141700 Sobic009G141700 Sobic002G229900--Sobic009G141700 Sobic002G184400 Sobic002G184400 Sobic002G229900--Sobic002G184400 Sobic004G225300 Sobic004G225300 Sobic004G027000--Sobic004G225300 Sobic004G206300 Sobic004G206300 Sobic004G027000--Sobic004G206300 Sobic002G139000 Sobic002G139000 Sobic004G027000--Sobic002G139000 Sobic009G056300 Sobic009G056300 Sobic004G027000--Sobic009G056300 Sobic004G027000--Sobic002G394800 Sobic001G422700 Sobic001G422700 Sobic004G027000--Sobic001G422700 Sobic001G280400 Sobic001G280400 Sobic004G027000--Sobic001G280400 Sobic005G164500 Sobic005G164500 Sobic004G027000--Sobic005G164500 Sobic004G184000 Sobic004G184000 Sobic004G027000--Sobic004G184000 Sobic007G159200 Sobic007G159200 Sobic002G203500--Sobic007G159200 Sobic002G203500--Sobic009G141700 Sobic007G128100 Sobic007G128100 Sobic002G203500--Sobic007G128100 Sobic004G352100 Sobic004G352100 Sobic002G203500--Sobic004G352100 Sobic002G203500--Sobic007G125700 Sobic001G043500 Sobic001G043500 Sobic002G203500--Sobic001G043500 Sobic007G023100 Sobic007G023100 Sobic002G203500--Sobic007G023100 Sobic007G161600 Sobic007G161600 Sobic002G203500--Sobic007G161600 Sobic002G425200 Sobic002G425200 Sobic002G203500--Sobic002G425200 Sobic001G494100 Sobic001G494100 Sobic006G046600--Sobic001G494100 Sobic001G384700 Sobic001G384700 Sobic006G046600--Sobic001G384700 Sobic006G046600--Sobic009G141700 Sobic010G173700 Sobic010G173700 Sobic006G046600--Sobic010G173700 Sobic002G216600 Sobic002G216600 Sobic006G046600--Sobic002G216600 Sobic008G169400 Sobic008G169400 Sobic006G046600--Sobic008G169400 Sobic001G079900 Sobic001G079900 Sobic006G046600--Sobic001G079900 Sobic008G044600 Sobic008G044600 Sobic006G046600--Sobic008G044600 Sobic003G277900 Sobic003G277900 Sobic006G046600--Sobic003G277900 Sobic004G229100--Sobic001G217100 Sobic004G078100 Sobic004G078100 Sobic004G229100--Sobic004G078100 Sobic009G192500 Sobic009G192500 Sobic004G229100--Sobic009G192500 Sobic003G132700 Sobic003G132700 Sobic004G229100--Sobic003G132700 Sobic007G046900 Sobic007G046900 Sobic004G229100--Sobic007G046900 Sobic004G229100--Sobic009G164900 Sobic002G089900 Sobic002G089900 Sobic004G229100--Sobic002G089900 Sobic009G018000 Sobic009G018000 Sobic004G229100--Sobic009G018000 Sobic002G095700 Sobic002G095700 Sobic004G229100--Sobic002G095700 Sobic002G007200 Sobic002G007200 Sobic009G164900--Sobic002G007200 Sobic003G380500 Sobic003G380500 Sobic009G164900--Sobic003G380500 Sobic001G216600 Sobic001G216600 Sobic009G164900--Sobic001G216600 Sobic003G356200 Sobic003G356200 Sobic009G164900--Sobic003G356200 Sobic009G164900--Sobic001G217100 Sobic009G164900--Sobic004G229100 Sobic009G011500 Sobic009G011500 Sobic009G164900--Sobic009G011500 Sobic007G195400 Sobic007G195400 Sobic009G164900--Sobic007G195400 Sobic002G157200 Sobic002G157200 Sobic009G164900--Sobic002G157200 Sobic001G217100--Sobic004G229100 Sobic001G217100--Sobic003G132700 Sobic006G067700 Sobic006G067700 Sobic001G217100--Sobic006G067700 Sobic002G223300 Sobic002G223300 Sobic001G217100--Sobic002G223300 Sobic002G334600 Sobic002G334600 Sobic001G217100--Sobic002G334600 Sobic001G217100--Sobic009G164900 Sobic001G019200 Sobic001G019200 Sobic001G217100--Sobic001G019200 Sobic001G217100--Sobic002G430900 Sobic002G002100 Sobic002G002100 Sobic001G217100--Sobic002G002100 Sobic003G240100 Sobic003G240100 Sobic001G382400--Sobic003G240100 Sobic002G345800 Sobic002G345800 Sobic001G382400--Sobic002G345800 Sobic001G116600 Sobic001G116600 Sobic001G382400--Sobic001G116600 Sobic001G382400--Sobic007G125700 Sobic007G219200 Sobic007G219200 Sobic001G382400--Sobic007G219200 Sobic004G207000 Sobic004G207000 Sobic001G382400--Sobic004G207000 Sobic009G082600 Sobic009G082600 Sobic001G382400--Sobic009G082600 Sobic001G123100 Sobic001G123100 Sobic001G382400--Sobic001G123100 Sobic003G410700 Sobic003G410700 Sobic001G382400--Sobic003G410700 Sobic006G162800--Sobic001G120900 Sobic002G082100 Sobic002G082100 Sobic006G162800--Sobic002G082100 Sobic006G190400 Sobic006G190400 Sobic006G162800--Sobic006G190400 Sobic004G192300 Sobic004G192300 Sobic006G162800--Sobic004G192300 Sobic001G039800 Sobic001G039800 Sobic006G162800--Sobic001G039800 Sobic001G146301 Sobic001G146301 Sobic006G162800--Sobic001G146301 Sobic006G223300 Sobic006G223300 Sobic006G162800--Sobic006G223300 Sobic003G306800 Sobic003G306800 Sobic006G162800--Sobic003G306800 Sobic001G513600 Sobic001G513600 Sobic006G162800--Sobic001G513600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.