Gene annotation
Transcriptome id Sobic.003G340900.1
Synonym Sb03g038490
Functional annotation SAG20, putative, expressed
UniProt C5XNW3
Pfam PF04749 PF11204
Panther DB PTHR31045 PTHR31045:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G05350 : PLAC8 family protein
RAP-DB (Rice) LOC_Os01g61060.1 : SAG20, putative, expressed
MaizeGDB (Corn) Zm00025a027027
Brachypodium KQK10383
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G017800 LMBR1 integral membrane protein, putative, expressed K14617: LMBR1 domain-containing protein 1
2 Sobic.003G259400 katanin p60 ATPase-containing subunit, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
3 Sobic.001G078100 expressed protein -
4 Sobic.002G143900 OsFBL19 - F-box domain and LRR containing protein, expressed K10273: F-box and leucine-rich repeat protein 7
5 Sobic.006G044000 - -
6 Sobic.001G518400 EF hand family protein, putative, expressed -
7 Sobic.003G412300 expressed protein -
8 Sobic.007G027700 expressed protein -
9 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
10 Sobic.001G010600 U2 small nuclear ribonucleoprotein A, putative, expressed K11092: U2 small nuclear ribonucleoprotein A'
11 Sobic.001G142100 WD domain, G-beta repeat domain containing protein, expressed K04536: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
12 Sobic.003G153000 galactosyltransferase family protein, putative, expressed -
13 Sobic.003G380400 expressed protein -
14 Sobic.003G029100 frigida, putative, expressed -
15 Sobic.004G355800 expressed protein -
16 Sobic.007G203200 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
17 Sobic.001G094900 protein transport protein Sec23B, putative, expressed K14006: protein transport protein SEC23
18 Sobic.002G233900 AGAP005770-PA, putative, expressed -
19 Sobic.008G139700 bromodomain associated family protein, expressed K14649: transcription initiation factor TFIID subunit 8
20 Sobic.001G111600 expressed protein -


Gene co-expression network
sample Sobic003G340900 Sobic003G340900 Sobic010G017800 Sobic010G017800 Sobic003G340900--Sobic010G017800 Sobic003G259400 Sobic003G259400 Sobic003G340900--Sobic003G259400 Sobic001G078100 Sobic001G078100 Sobic003G340900--Sobic001G078100 Sobic002G143900 Sobic002G143900 Sobic003G340900--Sobic002G143900 Sobic006G044000 Sobic006G044000 Sobic003G340900--Sobic006G044000 Sobic001G518400 Sobic001G518400 Sobic003G340900--Sobic001G518400 Sobic003G412300 Sobic003G412300 Sobic003G340900--Sobic003G412300 Sobic007G027700 Sobic007G027700 Sobic003G340900--Sobic007G027700 Sobic005G216300 Sobic005G216300 Sobic003G340900--Sobic005G216300 Sobic002G313500 Sobic002G313500 Sobic010G017800--Sobic002G313500 Sobic010G017800--Sobic001G518400 Sobic008G139700 Sobic008G139700 Sobic010G017800--Sobic008G139700 Sobic001G335900 Sobic001G335900 Sobic010G017800--Sobic001G335900 Sobic009G229600 Sobic009G229600 Sobic010G017800--Sobic009G229600 Sobic004G325400 Sobic004G325400 Sobic010G017800--Sobic004G325400 Sobic010G017800--Sobic005G216300 Sobic001G371200 Sobic001G371200 Sobic010G017800--Sobic001G371200 Sobic010G017800--Sobic003G340900 Sobic009G231700 Sobic009G231700 Sobic003G259400--Sobic009G231700 Sobic003G259400--Sobic003G340900 Sobic003G259400--Sobic005G216300 Sobic009G226400 Sobic009G226400 Sobic003G259400--Sobic009G226400 Sobic003G099300 Sobic003G099300 Sobic003G259400--Sobic003G099300 Sobic003G259400--Sobic010G017800 Sobic001G067900 Sobic001G067900 Sobic003G259400--Sobic001G067900 Sobic001G010600 Sobic001G010600 Sobic003G259400--Sobic001G010600 SobicK004100 SobicK004100 Sobic003G259400--SobicK004100 Sobic001G078100--Sobic001G518400 Sobic001G111600 Sobic001G111600 Sobic001G078100--Sobic001G111600 Sobic001G078100--Sobic007G027700 Sobic005G220000 Sobic005G220000 Sobic001G078100--Sobic005G220000 Sobic003G314700 Sobic003G314700 Sobic001G078100--Sobic003G314700 Sobic001G094900 Sobic001G094900 Sobic001G078100--Sobic001G094900 Sobic001G078100--Sobic004G325400 Sobic001G026500 Sobic001G026500 Sobic001G078100--Sobic001G026500 Sobic006G138000 Sobic006G138000 Sobic001G078100--Sobic006G138000 Sobic006G233300 Sobic006G233300 Sobic002G143900--Sobic006G233300 Sobic002G280600 Sobic002G280600 Sobic002G143900--Sobic002G280600 Sobic002G394800 Sobic002G394800 Sobic002G143900--Sobic002G394800 Sobic002G143900--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic002G143900--Sobic001G143500 Sobic002G143900--Sobic006G044000 Sobic001G526300 Sobic001G526300 Sobic002G143900--Sobic001G526300 Sobic010G232900 Sobic010G232900 Sobic002G143900--Sobic010G232900 Sobic002G143900--Sobic008G139700 Sobic006G044000--Sobic007G027700 Sobic006G044000--Sobic002G143900 Sobic007G112000 Sobic007G112000 Sobic006G044000--Sobic007G112000 Sobic001G267900 Sobic001G267900 Sobic006G044000--Sobic001G267900 Sobic006G044000--Sobic001G518400 Sobic010G209400 Sobic010G209400 Sobic006G044000--Sobic010G209400 Sobic006G032900 Sobic006G032900 Sobic006G044000--Sobic006G032900 Sobic006G044000--Sobic001G078100 Sobic006G044000--Sobic005G216300 Sobic001G170100 Sobic001G170100 Sobic001G518400--Sobic001G170100 Sobic001G518400--Sobic006G138000 Sobic001G518400--Sobic001G335900 Sobic001G518400--Sobic001G078100 Sobic001G518400--Sobic009G229600 Sobic010G275500 Sobic010G275500 Sobic001G518400--Sobic010G275500 Sobic006G202200 Sobic006G202200 Sobic001G518400--Sobic006G202200 Sobic003G126600 Sobic003G126600 Sobic001G518400--Sobic003G126600 Sobic001G369000 Sobic001G369000 Sobic001G518400--Sobic001G369000 Sobic003G412300--Sobic007G027700 Sobic003G401100 Sobic003G401100 Sobic003G412300--Sobic003G401100 Sobic004G156500 Sobic004G156500 Sobic003G412300--Sobic004G156500 Sobic001G138400 Sobic001G138400 Sobic003G412300--Sobic001G138400 Sobic006G252700 Sobic006G252700 Sobic003G412300--Sobic006G252700 Sobic002G058300 Sobic002G058300 Sobic003G412300--Sobic002G058300 Sobic007G054400 Sobic007G054400 Sobic003G412300--Sobic007G054400 Sobic002G259800 Sobic002G259800 Sobic003G412300--Sobic002G259800 Sobic002G357100 Sobic002G357100 Sobic003G412300--Sobic002G357100 Sobic008G127400 Sobic008G127400 Sobic007G027700--Sobic008G127400 Sobic007G027700--Sobic003G401100 Sobic007G027700--Sobic003G412300 Sobic007G027700--Sobic001G143500 Sobic007G027700--Sobic004G325400 Sobic007G027700--Sobic005G216300 Sobic001G395100 Sobic001G395100 Sobic007G027700--Sobic001G395100 Sobic010G279900 Sobic010G279900 Sobic007G027700--Sobic010G279900 Sobic006G267300 Sobic006G267300 Sobic007G027700--Sobic006G267300 Sobic005G216300--Sobic003G099300 Sobic005G216300--Sobic007G027700 Sobic004G039600 Sobic004G039600 Sobic005G216300--Sobic004G039600 Sobic005G216300--Sobic001G369000 Sobic005G216300--Sobic001G335900 Sobic001G426600 Sobic001G426600 Sobic005G216300--Sobic001G426600 Sobic001G142100 Sobic001G142100 Sobic005G216300--Sobic001G142100 Sobic005G216300--Sobic003G126600 Sobic006G208500 Sobic006G208500 Sobic005G216300--Sobic006G208500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.