Gene annotation
Transcriptome id Sobic.002G143900.3,Sobic.002G143900.2
Synonym VFB1, Sb02g013790
Functional annotation OsFBL19 - F-box domain and LRR containing protein, expressed
UniProt C5X7C4
Pfam PF12937
Panther DB PTHR24006 PTHR24006:SF481
NCBI CDD KOG1947; Leucine rich repeat proteins, some proteins contain F-box
KEGG Orthology K10273; F-box and leucine-rich repeat protein 7
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G47056 : VIER F-box proteine 1
RAP-DB (Rice) LOC_Os04g42670.1 : OsFBL19 - F-box domain and LRR containing protein, expressed
MaizeGDB (Corn) Zm00025a045942
Brachypodium KQJ86910 , KQJ86909
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G233300 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
2 Sobic.002G280600 hydroxyproline-rich glycoprotein family protein, putative, expressed -
3 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
4 Sobic.007G027700 expressed protein -
5 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
6 Sobic.006G044000 - -
7 Sobic.001G526300 WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
8 Sobic.010G232900 surp module family protein, putative, expressed -
9 Sobic.008G139700 bromodomain associated family protein, expressed K14649: transcription initiation factor TFIID subunit 8
10 Sobic.006G233000 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
11 Sobic.008G004400 GIL1, putative, expressed -
12 Sobic.003G340900 SAG20, putative, expressed -
13 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
14 Sobic.010G239800 hydrolase, NUDIX family, domain containing protein, expressed K12613: mRNA-decapping enzyme subunit 2
15 Sobic.001G078100 expressed protein -
16 Sobic.006G032900 endonuclease/exonuclease/phosphatase family protein, putative, expressed -
17 Sobic.001G080000 expressed protein -
18 Sobic.010G017800 LMBR1 integral membrane protein, putative, expressed K14617: LMBR1 domain-containing protein 1
19 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
20 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6


Gene co-expression network
sample Sobic002G143900 Sobic002G143900 Sobic006G233300 Sobic006G233300 Sobic002G143900--Sobic006G233300 Sobic002G280600 Sobic002G280600 Sobic002G143900--Sobic002G280600 Sobic002G394800 Sobic002G394800 Sobic002G143900--Sobic002G394800 Sobic007G027700 Sobic007G027700 Sobic002G143900--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic002G143900--Sobic001G143500 Sobic006G044000 Sobic006G044000 Sobic002G143900--Sobic006G044000 Sobic001G526300 Sobic001G526300 Sobic002G143900--Sobic001G526300 Sobic010G232900 Sobic010G232900 Sobic002G143900--Sobic010G232900 Sobic008G139700 Sobic008G139700 Sobic002G143900--Sobic008G139700 Sobic006G010000 Sobic006G010000 Sobic006G233300--Sobic006G010000 Sobic006G233300--Sobic002G143900 Sobic006G233000 Sobic006G233000 Sobic006G233300--Sobic006G233000 Sobic003G158700 Sobic003G158700 Sobic006G233300--Sobic003G158700 Sobic006G233300--Sobic002G394800 Sobic003G099300 Sobic003G099300 Sobic006G233300--Sobic003G099300 Sobic010G239800 Sobic010G239800 Sobic006G233300--Sobic010G239800 Sobic010G247400 Sobic010G247400 Sobic006G233300--Sobic010G247400 Sobic006G233300--Sobic002G280600 Sobic002G280600--Sobic002G143900 Sobic002G280600--Sobic002G394800 Sobic002G280600--Sobic010G232900 Sobic002G280600--Sobic007G027700 Sobic003G123000 Sobic003G123000 Sobic002G280600--Sobic003G123000 Sobic002G280600--Sobic006G233300 Sobic002G280600--Sobic010G239800 Sobic003G273400 Sobic003G273400 Sobic002G280600--Sobic003G273400 Sobic002G280600--Sobic001G526300 Sobic002G394800--Sobic006G233300 Sobic002G394800--Sobic002G143900 Sobic002G394800--Sobic006G233000 Sobic002G394800--Sobic002G280600 Sobic006G245700 Sobic006G245700 Sobic002G394800--Sobic006G245700 Sobic006G272200 Sobic006G272200 Sobic002G394800--Sobic006G272200 Sobic001G370300 Sobic001G370300 Sobic002G394800--Sobic001G370300 Sobic004G249300 Sobic004G249300 Sobic002G394800--Sobic004G249300 Sobic002G430900 Sobic002G430900 Sobic002G394800--Sobic002G430900 Sobic008G127400 Sobic008G127400 Sobic007G027700--Sobic008G127400 Sobic003G401100 Sobic003G401100 Sobic007G027700--Sobic003G401100 Sobic003G412300 Sobic003G412300 Sobic007G027700--Sobic003G412300 Sobic007G027700--Sobic001G143500 Sobic004G325400 Sobic004G325400 Sobic007G027700--Sobic004G325400 Sobic005G216300 Sobic005G216300 Sobic007G027700--Sobic005G216300 Sobic001G395100 Sobic001G395100 Sobic007G027700--Sobic001G395100 Sobic010G279900 Sobic010G279900 Sobic007G027700--Sobic010G279900 Sobic006G267300 Sobic006G267300 Sobic007G027700--Sobic006G267300 Sobic006G252700 Sobic006G252700 Sobic001G143500--Sobic006G252700 Sobic007G111100 Sobic007G111100 Sobic001G143500--Sobic007G111100 Sobic002G313500 Sobic002G313500 Sobic001G143500--Sobic002G313500 Sobic004G350100 Sobic004G350100 Sobic001G143500--Sobic004G350100 Sobic001G143500--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic001G143500--Sobic003G439800 Sobic001G466700 Sobic001G466700 Sobic001G143500--Sobic001G466700 Sobic006G278700 Sobic006G278700 Sobic001G143500--Sobic006G278700 Sobic001G143500--Sobic006G267300 Sobic006G044000--Sobic007G027700 Sobic006G044000--Sobic002G143900 Sobic007G112000 Sobic007G112000 Sobic006G044000--Sobic007G112000 Sobic001G267900 Sobic001G267900 Sobic006G044000--Sobic001G267900 Sobic001G518400 Sobic001G518400 Sobic006G044000--Sobic001G518400 Sobic010G209400 Sobic010G209400 Sobic006G044000--Sobic010G209400 Sobic006G032900 Sobic006G032900 Sobic006G044000--Sobic006G032900 Sobic001G078100 Sobic001G078100 Sobic006G044000--Sobic001G078100 Sobic006G044000--Sobic005G216300 Sobic001G526300--Sobic007G027700 Sobic009G040800 Sobic009G040800 Sobic001G526300--Sobic009G040800 Sobic001G335900 Sobic001G335900 Sobic001G526300--Sobic001G335900 Sobic010G278600 Sobic010G278600 Sobic001G526300--Sobic010G278600 Sobic003G240700 Sobic003G240700 Sobic001G526300--Sobic003G240700 Sobic009G120500 Sobic009G120500 Sobic001G526300--Sobic009G120500 Sobic001G526300--Sobic002G143900 Sobic006G268300 Sobic006G268300 Sobic001G526300--Sobic006G268300 Sobic001G526300--Sobic010G232900 Sobic001G042200 Sobic001G042200 Sobic010G232900--Sobic001G042200 Sobic010G232900--Sobic007G027700 Sobic010G232900--Sobic008G127400 Sobic010G232900--Sobic010G239800 Sobic010G232900--Sobic002G280600 Sobic003G187200 Sobic003G187200 Sobic010G232900--Sobic003G187200 Sobic003G006400 Sobic003G006400 Sobic010G232900--Sobic003G006400 Sobic006G204800 Sobic006G204800 Sobic010G232900--Sobic006G204800 Sobic010G232900--Sobic001G526300 Sobic008G139700--Sobic002G313500 Sobic010G017800 Sobic010G017800 Sobic008G139700--Sobic010G017800 Sobic001G080000 Sobic001G080000 Sobic008G139700--Sobic001G080000 Sobic008G139700--Sobic001G143500 Sobic002G180000 Sobic002G180000 Sobic008G139700--Sobic002G180000 Sobic003G045400 Sobic003G045400 Sobic008G139700--Sobic003G045400 Sobic007G205000 Sobic007G205000 Sobic008G139700--Sobic007G205000 Sobic008G139700--Sobic006G267300 Sobic010G105600 Sobic010G105600 Sobic008G139700--Sobic010G105600
Octagon: transcription factors


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