Gene annotation
Transcriptome id Sobic.002G280600.3,Sobic.002G280600.1,Sobic.002G280600.2
Synonym Sb02g031320
Functional annotation hydroxyproline-rich glycoprotein family protein, putative, expressed
UniProt C5X6W5
Pfam PF10018
Panther DB PTHR13208 PTHR13208:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016592; mediator complex GO:0006357regulation of transcription by RNA polymerase II GO:0001104transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT5G02850 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os09g36890.2,LOC_Os09g36890.1 : hydroxyproline-rich glycoprotein family protein, putative, expressed
MaizeGDB (Corn) Zm00025a014465
Brachypodium KQJ91251
Barley HORVU0Hr1G040300.1 , HORVU5Hr1G084170.3 , HORVU5Hr1G084170.2 , HORVU5Hr1G084170.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G143900 OsFBL19 - F-box domain and LRR containing protein, expressed K10273: F-box and leucine-rich repeat protein 7
2 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
3 Sobic.010G232900 surp module family protein, putative, expressed -
4 Sobic.007G027700 expressed protein -
5 Sobic.003G123000 splicing factor 3 subunit 1, putative, expressed K12825: SF3A1, splicing factor 3A subunit 1
6 Sobic.006G233300 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
7 Sobic.010G239800 hydrolase, NUDIX family, domain containing protein, expressed K12613: mRNA-decapping enzyme subunit 2
8 Sobic.003G273400 glycylpeptide N-tetradecanoyltransferase 1, putative, expressed K00671: glycylpeptide N-tetradecanoyltransferase
9 Sobic.001G526300 WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
10 Sobic.002G224700 NFKB, putative, expressed -
11 Sobic.008G127400 OsFBX252 - F-box domain containing protein, expressed -
12 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
13 Sobic.010G202500 C2 domain containing protein, putative, expressed -
14 Sobic.007G011600 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
15 Sobic.009G001100 expressed protein -
16 Sobic.001G218800 expressed protein -
17 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
18 Sobic.007G205000 zinc finger family protein, putative, expressed -
19 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
20 Sobic.008G139700 bromodomain associated family protein, expressed K14649: transcription initiation factor TFIID subunit 8


Gene co-expression network
sample Sobic002G280600 Sobic002G280600 Sobic002G143900 Sobic002G143900 Sobic002G280600--Sobic002G143900 Sobic002G394800 Sobic002G394800 Sobic002G280600--Sobic002G394800 Sobic010G232900 Sobic010G232900 Sobic002G280600--Sobic010G232900 Sobic007G027700 Sobic007G027700 Sobic002G280600--Sobic007G027700 Sobic003G123000 Sobic003G123000 Sobic002G280600--Sobic003G123000 Sobic006G233300 Sobic006G233300 Sobic002G280600--Sobic006G233300 Sobic010G239800 Sobic010G239800 Sobic002G280600--Sobic010G239800 Sobic003G273400 Sobic003G273400 Sobic002G280600--Sobic003G273400 Sobic001G526300 Sobic001G526300 Sobic002G280600--Sobic001G526300 Sobic002G143900--Sobic006G233300 Sobic002G143900--Sobic002G280600 Sobic002G143900--Sobic002G394800 Sobic002G143900--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic002G143900--Sobic001G143500 Sobic006G044000 Sobic006G044000 Sobic002G143900--Sobic006G044000 Sobic002G143900--Sobic001G526300 Sobic002G143900--Sobic010G232900 Sobic008G139700 Sobic008G139700 Sobic002G143900--Sobic008G139700 Sobic002G394800--Sobic006G233300 Sobic002G394800--Sobic002G143900 Sobic006G233000 Sobic006G233000 Sobic002G394800--Sobic006G233000 Sobic002G394800--Sobic002G280600 Sobic006G245700 Sobic006G245700 Sobic002G394800--Sobic006G245700 Sobic006G272200 Sobic006G272200 Sobic002G394800--Sobic006G272200 Sobic001G370300 Sobic001G370300 Sobic002G394800--Sobic001G370300 Sobic004G249300 Sobic004G249300 Sobic002G394800--Sobic004G249300 Sobic002G430900 Sobic002G430900 Sobic002G394800--Sobic002G430900 Sobic001G042200 Sobic001G042200 Sobic010G232900--Sobic001G042200 Sobic010G232900--Sobic007G027700 Sobic008G127400 Sobic008G127400 Sobic010G232900--Sobic008G127400 Sobic010G232900--Sobic010G239800 Sobic010G232900--Sobic002G280600 Sobic003G187200 Sobic003G187200 Sobic010G232900--Sobic003G187200 Sobic003G006400 Sobic003G006400 Sobic010G232900--Sobic003G006400 Sobic006G204800 Sobic006G204800 Sobic010G232900--Sobic006G204800 Sobic010G232900--Sobic001G526300 Sobic007G027700--Sobic008G127400 Sobic003G401100 Sobic003G401100 Sobic007G027700--Sobic003G401100 Sobic003G412300 Sobic003G412300 Sobic007G027700--Sobic003G412300 Sobic007G027700--Sobic001G143500 Sobic004G325400 Sobic004G325400 Sobic007G027700--Sobic004G325400 Sobic005G216300 Sobic005G216300 Sobic007G027700--Sobic005G216300 Sobic001G395100 Sobic001G395100 Sobic007G027700--Sobic001G395100 Sobic010G279900 Sobic010G279900 Sobic007G027700--Sobic010G279900 Sobic006G267300 Sobic006G267300 Sobic007G027700--Sobic006G267300 Sobic003G122500 Sobic003G122500 Sobic003G123000--Sobic003G122500 Sobic004G095300 Sobic004G095300 Sobic003G123000--Sobic004G095300 Sobic001G222900 Sobic001G222900 Sobic003G123000--Sobic001G222900 Sobic010G171100 Sobic010G171100 Sobic003G123000--Sobic010G171100 Sobic003G123000--Sobic002G280600 Sobic004G246700 Sobic004G246700 Sobic003G123000--Sobic004G246700 Sobic001G218800 Sobic001G218800 Sobic003G123000--Sobic001G218800 Sobic008G165700 Sobic008G165700 Sobic003G123000--Sobic008G165700 Sobic001G473600 Sobic001G473600 Sobic003G123000--Sobic001G473600 Sobic006G010000 Sobic006G010000 Sobic006G233300--Sobic006G010000 Sobic006G233300--Sobic002G143900 Sobic006G233300--Sobic006G233000 Sobic003G158700 Sobic003G158700 Sobic006G233300--Sobic003G158700 Sobic006G233300--Sobic002G394800 Sobic003G099300 Sobic003G099300 Sobic006G233300--Sobic003G099300 Sobic006G233300--Sobic010G239800 Sobic010G247400 Sobic010G247400 Sobic006G233300--Sobic010G247400 Sobic006G233300--Sobic002G280600 Sobic010G239800--Sobic003G099300 Sobic010G239800--Sobic007G027700 Sobic010G085200 Sobic010G085200 Sobic010G239800--Sobic010G085200 Sobic010G269100 Sobic010G269100 Sobic010G239800--Sobic010G269100 Sobic010G239800--Sobic006G233300 Sobic010G239800--Sobic010G232900 Sobic010G279700 Sobic010G279700 Sobic010G239800--Sobic010G279700 Sobic008G092300 Sobic008G092300 Sobic010G239800--Sobic008G092300 Sobic002G145800 Sobic002G145800 Sobic010G239800--Sobic002G145800 Sobic008G137600 Sobic008G137600 Sobic003G273400--Sobic008G137600 Sobic001G532100 Sobic001G532100 Sobic003G273400--Sobic001G532100 Sobic001G207500 Sobic001G207500 Sobic003G273400--Sobic001G207500 Sobic002G306400 Sobic002G306400 Sobic003G273400--Sobic002G306400 Sobic001G294900 Sobic001G294900 Sobic003G273400--Sobic001G294900 Sobic002G341800 Sobic002G341800 Sobic003G273400--Sobic002G341800 Sobic006G109700 Sobic006G109700 Sobic003G273400--Sobic006G109700 Sobic002G268400 Sobic002G268400 Sobic003G273400--Sobic002G268400 Sobic003G273400--Sobic002G280600 Sobic001G526300--Sobic007G027700 Sobic009G040800 Sobic009G040800 Sobic001G526300--Sobic009G040800 Sobic001G335900 Sobic001G335900 Sobic001G526300--Sobic001G335900 Sobic010G278600 Sobic010G278600 Sobic001G526300--Sobic010G278600 Sobic003G240700 Sobic003G240700 Sobic001G526300--Sobic003G240700 Sobic009G120500 Sobic009G120500 Sobic001G526300--Sobic009G120500 Sobic001G526300--Sobic002G143900 Sobic006G268300 Sobic006G268300 Sobic001G526300--Sobic006G268300 Sobic001G526300--Sobic010G232900
Octagon: transcription factors


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