Gene annotation
Transcriptome id Sobic.003G123000.1,Sobic.003G123000.2
Synonym Sb03g010420
Functional annotation splicing factor 3 subunit 1, putative, expressed
UniProt C5XGI9
Pfam PF00240 PF01805 PF12230
Panther DB PTHR15316 PTHR15316:SF1
NCBI CDD KOG0007; Splicing factor 3a, subunit 1
KEGG Orthology K12825; SF3A1, splicing factor 3A subunit 1
Gene Ontology GO:0005515; protein binding GO:0006396RNA processing GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT1G14650 : SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein
RAP-DB (Rice) LOC_Os02g14780.1 : splicing factor 3 subunit 1, putative, expressed
MaizeGDB (Corn) Zm00025a035269 , Zm00025a024017 , Zm00025a002268
Brachypodium KQK03785 , KQK03784 , KQK03783
Barley HORVU3Hr1G110920.4 , HORVU3Hr1G110920.5 , HORVU3Hr1G110920.6 , HORVU3Hr1G110920.1 , HORVU3Hr1G110920.2 , HORVU3Hr1G110920.3
Wheat TraesCS3D02G510100 , TraesCS3B02G212000 , TraesCS3B02G566900 , TraesCS3B02G566900 , TraesCS3A02G503600 , TraesCS3B02G211900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G122500 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
2 Sobic.004G095300 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
3 Sobic.001G222900 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
4 Sobic.010G171100 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
5 Sobic.002G280600 hydroxyproline-rich glycoprotein family protein, putative, expressed -
6 Sobic.004G246700 zinc finger family protein, putative, expressed -
7 Sobic.001G218800 expressed protein -
8 Sobic.008G165700 expressed protein -
9 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
10 Sobic.010G268300 protein phosphatase 2C, putative, expressed -
11 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
12 Sobic.007G011600 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
13 Sobic.007G027700 expressed protein -
14 Sobic.006G171700 - -
15 Sobic.010G055800 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
16 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
17 Sobic.005G160400 zinc finger, C3HC4 type domain containing protein, expressed K19043: E3 ubiquitin-protein ligase RHF
18 Sobic.007G084100 expressed protein -
19 Sobic.007G009400 bromodomain domain containing protein, expressed -
20 Sobic.004G186000 salt tolerant protein, putative, expressed -


Gene co-expression network
sample Sobic003G123000 Sobic003G123000 Sobic003G122500 Sobic003G122500 Sobic003G123000--Sobic003G122500 Sobic004G095300 Sobic004G095300 Sobic003G123000--Sobic004G095300 Sobic001G222900 Sobic001G222900 Sobic003G123000--Sobic001G222900 Sobic010G171100 Sobic010G171100 Sobic003G123000--Sobic010G171100 Sobic002G280600 Sobic002G280600 Sobic003G123000--Sobic002G280600 Sobic004G246700 Sobic004G246700 Sobic003G123000--Sobic004G246700 Sobic001G218800 Sobic001G218800 Sobic003G123000--Sobic001G218800 Sobic008G165700 Sobic008G165700 Sobic003G123000--Sobic008G165700 Sobic001G473600 Sobic001G473600 Sobic003G123000--Sobic001G473600 Sobic007G084100 Sobic007G084100 Sobic003G122500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic003G122500--Sobic005G160400 Sobic003G122500--Sobic003G123000 Sobic001G241100 Sobic001G241100 Sobic003G122500--Sobic001G241100 Sobic001G119900 Sobic001G119900 Sobic003G122500--Sobic001G119900 Sobic003G122500--Sobic010G171100 Sobic002G047700 Sobic002G047700 Sobic003G122500--Sobic002G047700 Sobic006G199200 Sobic006G199200 Sobic003G122500--Sobic006G199200 Sobic004G257100 Sobic004G257100 Sobic003G122500--Sobic004G257100 Sobic004G095300--Sobic010G171100 Sobic004G095300--Sobic003G123000 Sobic001G003500 Sobic001G003500 Sobic004G095300--Sobic001G003500 Sobic002G092300 Sobic002G092300 Sobic004G095300--Sobic002G092300 Sobic004G095300--Sobic001G473600 Sobic001G088100 Sobic001G088100 Sobic004G095300--Sobic001G088100 Sobic005G220000 Sobic005G220000 Sobic004G095300--Sobic005G220000 Sobic010G085200 Sobic010G085200 Sobic004G095300--Sobic010G085200 Sobic002G180000 Sobic002G180000 Sobic004G095300--Sobic002G180000 Sobic001G108900 Sobic001G108900 Sobic001G222900--Sobic001G108900 Sobic001G222900--Sobic003G123000 Sobic005G007700 Sobic005G007700 Sobic001G222900--Sobic005G007700 Sobic001G222900--Sobic004G246700 Sobic005G079800 Sobic005G079800 Sobic001G222900--Sobic005G079800 Sobic008G165100 Sobic008G165100 Sobic001G222900--Sobic008G165100 Sobic002G309800 Sobic002G309800 Sobic001G222900--Sobic002G309800 Sobic002G224700 Sobic002G224700 Sobic001G222900--Sobic002G224700 Sobic001G222900--Sobic004G095300 Sobic010G171100--Sobic004G095300 Sobic010G171100--Sobic003G122500 Sobic010G171100--Sobic003G123000 Sobic010G228700 Sobic010G228700 Sobic010G171100--Sobic010G228700 Sobic010G171100--Sobic005G220000 Sobic010G171100--Sobic010G085200 Sobic010G171100--Sobic001G088100 Sobic002G058700 Sobic002G058700 Sobic010G171100--Sobic002G058700 Sobic010G171100--Sobic007G084100 Sobic002G143900 Sobic002G143900 Sobic002G280600--Sobic002G143900 Sobic002G394800 Sobic002G394800 Sobic002G280600--Sobic002G394800 Sobic010G232900 Sobic010G232900 Sobic002G280600--Sobic010G232900 Sobic007G027700 Sobic007G027700 Sobic002G280600--Sobic007G027700 Sobic002G280600--Sobic003G123000 Sobic006G233300 Sobic006G233300 Sobic002G280600--Sobic006G233300 Sobic010G239800 Sobic010G239800 Sobic002G280600--Sobic010G239800 Sobic003G273400 Sobic003G273400 Sobic002G280600--Sobic003G273400 Sobic001G526300 Sobic001G526300 Sobic002G280600--Sobic001G526300 Sobic004G349900 Sobic004G349900 Sobic004G246700--Sobic004G349900 Sobic002G365100 Sobic002G365100 Sobic004G246700--Sobic002G365100 Sobic002G259800 Sobic002G259800 Sobic004G246700--Sobic002G259800 Sobic008G127400 Sobic008G127400 Sobic004G246700--Sobic008G127400 Sobic003G241200 Sobic003G241200 Sobic004G246700--Sobic003G241200 Sobic010G202600 Sobic010G202600 Sobic004G246700--Sobic010G202600 Sobic004G096500 Sobic004G096500 Sobic004G246700--Sobic004G096500 Sobic002G320500 Sobic002G320500 Sobic004G246700--Sobic002G320500 Sobic002G034600 Sobic002G034600 Sobic004G246700--Sobic002G034600 Sobic010G108900 Sobic010G108900 Sobic001G218800--Sobic010G108900 Sobic003G004700 Sobic003G004700 Sobic001G218800--Sobic003G004700 Sobic010G176500 Sobic010G176500 Sobic001G218800--Sobic010G176500 Sobic001G218800--Sobic003G123000 Sobic010G000300 Sobic010G000300 Sobic001G218800--Sobic010G000300 Sobic001G380500 Sobic001G380500 Sobic001G218800--Sobic001G380500 Sobic006G087100 Sobic006G087100 Sobic001G218800--Sobic006G087100 Sobic001G218800--Sobic006G233300 Sobic009G108500 Sobic009G108500 Sobic001G218800--Sobic009G108500 Sobic006G273200 Sobic006G273200 Sobic008G165700--Sobic006G273200 Sobic009G233300 Sobic009G233300 Sobic008G165700--Sobic009G233300 Sobic010G268300 Sobic010G268300 Sobic008G165700--Sobic010G268300 Sobic002G187801 Sobic002G187801 Sobic008G165700--Sobic002G187801 Sobic008G165700--Sobic002G365100 Sobic001G191100 Sobic001G191100 Sobic008G165700--Sobic001G191100 Sobic008G165700--Sobic003G123000 Sobic003G018900 Sobic003G018900 Sobic008G165700--Sobic003G018900 Sobic003G000150 Sobic003G000150 Sobic008G165700--Sobic003G000150 Sobic001G473600--Sobic002G034600 Sobic003G352200 Sobic003G352200 Sobic001G473600--Sobic003G352200 Sobic007G046200 Sobic007G046200 Sobic001G473600--Sobic007G046200 Sobic001G395100 Sobic001G395100 Sobic001G473600--Sobic001G395100 Sobic004G353000 Sobic004G353000 Sobic001G473600--Sobic004G353000 Sobic001G473600--Sobic007G084100 Sobic001G473600--Sobic001G088100 Sobic007G041300 Sobic007G041300 Sobic001G473600--Sobic007G041300 Sobic007G075900 Sobic007G075900 Sobic001G473600--Sobic007G075900
Octagon: transcription factors


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