Gene annotation
Transcriptome id Sobic.004G246700.1
Synonym Sb04g028660
Functional annotation zinc finger family protein, putative, expressed
UniProt C5XZ97
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF73
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G68070 : Zinc finger, C3HC4 type (RING finger) family protein
RAP-DB (Rice) LOC_Os02g45240.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a032677 , Zm00025a029350 , Zm00025a021958
Brachypodium KQK02030
Barley -
Wheat TraesCS6B02G327800 , TraesCS6A02G298300 , TraesCS6D02G278100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G246700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G349900 -(PubMedID : 27329702)@expressed protein -
2 Sobic.002G365100 RNA recognition motif containing protein, putative, expressed -
3 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
4 Sobic.008G127400 OsFBX252 - F-box domain containing protein, expressed -
5 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
6 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
7 Sobic.004G096500 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
8 Sobic.002G320500 MYB family transcription factor, putative, expressed -
9 Sobic.002G034600 zinc ion binding protein, putative, expressed -
10 Sobic.005G015900 dnaJ domain containing protein, expressed -
11 Sobic.007G132400 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
12 Sobic.007G009400 bromodomain domain containing protein, expressed -
13 Sobic.009G178800 bZIP transcription factor, putative, expressed K14432: ABA responsive element binding factor
14 Sobic.006G248500 expressed protein -
15 Sobic.001G206100 expressed protein -
16 Sobic.001G469800 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
17 Sobic.006G267300 expressed protein -
18 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
19 Sobic.010G268300 protein phosphatase 2C, putative, expressed -
20 Sobic.009G198100 expressed protein -


Gene co-expression network
sample Sobic004G246700 Sobic004G246700 Sobic004G349900 Sobic004G349900 Sobic004G246700--Sobic004G349900 Sobic002G365100 Sobic002G365100 Sobic004G246700--Sobic002G365100 Sobic002G259800 Sobic002G259800 Sobic004G246700--Sobic002G259800 Sobic008G127400 Sobic008G127400 Sobic004G246700--Sobic008G127400 Sobic003G241200 Sobic003G241200 Sobic004G246700--Sobic003G241200 Sobic010G202600 Sobic010G202600 Sobic004G246700--Sobic010G202600 Sobic004G096500 Sobic004G096500 Sobic004G246700--Sobic004G096500 Sobic002G320500 Sobic002G320500 Sobic004G246700--Sobic002G320500 Sobic002G034600 Sobic002G034600 Sobic004G246700--Sobic002G034600 Sobic007G137900 Sobic007G137900 Sobic004G349900--Sobic007G137900 Sobic002G157300 Sobic002G157300 Sobic004G349900--Sobic002G157300 Sobic006G128800 Sobic006G128800 Sobic004G349900--Sobic006G128800 Sobic001G206100 Sobic001G206100 Sobic004G349900--Sobic001G206100 Sobic003G220200 Sobic003G220200 Sobic004G349900--Sobic003G220200 Sobic007G011400 Sobic007G011400 Sobic004G349900--Sobic007G011400 Sobic003G261300 Sobic003G261300 Sobic004G349900--Sobic003G261300 Sobic008G116500 Sobic008G116500 Sobic004G349900--Sobic008G116500 Sobic007G185900 Sobic007G185900 Sobic004G349900--Sobic007G185900 Sobic003G185200 Sobic003G185200 Sobic002G365100--Sobic003G185200 Sobic002G365100--Sobic003G261300 Sobic003G248500 Sobic003G248500 Sobic002G365100--Sobic003G248500 Sobic003G359300 Sobic003G359300 Sobic002G365100--Sobic003G359300 Sobic002G365100--Sobic004G246700 Sobic010G055500 Sobic010G055500 Sobic002G365100--Sobic010G055500 Sobic010G174800 Sobic010G174800 Sobic002G365100--Sobic010G174800 Sobic001G028400 Sobic001G028400 Sobic002G365100--Sobic001G028400 Sobic002G365100--Sobic006G128800 Sobic009G195200 Sobic009G195200 Sobic002G259800--Sobic009G195200 Sobic001G306900 Sobic001G306900 Sobic002G259800--Sobic001G306900 Sobic005G015900 Sobic005G015900 Sobic002G259800--Sobic005G015900 Sobic003G394300 Sobic003G394300 Sobic002G259800--Sobic003G394300 Sobic006G248500 Sobic006G248500 Sobic002G259800--Sobic006G248500 Sobic001G246500 Sobic001G246500 Sobic002G259800--Sobic001G246500 Sobic005G084100 Sobic005G084100 Sobic002G259800--Sobic005G084100 Sobic002G423200 Sobic002G423200 Sobic002G259800--Sobic002G423200 Sobic004G156500 Sobic004G156500 Sobic002G259800--Sobic004G156500 Sobic007G027700 Sobic007G027700 Sobic008G127400--Sobic007G027700 Sobic006G267300 Sobic006G267300 Sobic008G127400--Sobic006G267300 Sobic003G205501 Sobic003G205501 Sobic008G127400--Sobic003G205501 Sobic006G065800 Sobic006G065800 Sobic008G127400--Sobic006G065800 Sobic008G127400--Sobic004G246700 Sobic008G058800 Sobic008G058800 Sobic008G127400--Sobic008G058800 Sobic008G127400--Sobic002G423200 Sobic008G127400--Sobic006G248500 Sobic010G033400 Sobic010G033400 Sobic008G127400--Sobic010G033400 Sobic004G084300 Sobic004G084300 Sobic003G241200--Sobic004G084300 Sobic006G165000 Sobic006G165000 Sobic003G241200--Sobic006G165000 Sobic006G032400 Sobic006G032400 Sobic003G241200--Sobic006G032400 Sobic002G248400 Sobic002G248400 Sobic003G241200--Sobic002G248400 Sobic003G241200--Sobic002G320500 Sobic003G173950 Sobic003G173950 Sobic003G241200--Sobic003G173950 Sobic010G236400 Sobic010G236400 Sobic003G241200--Sobic010G236400 Sobic003G200200 Sobic003G200200 Sobic003G241200--Sobic003G200200 Sobic002G157000 Sobic002G157000 Sobic003G241200--Sobic002G157000 Sobic007G111100 Sobic007G111100 Sobic010G202600--Sobic007G111100 Sobic001G469800 Sobic001G469800 Sobic010G202600--Sobic001G469800 Sobic001G131800 Sobic001G131800 Sobic010G202600--Sobic001G131800 Sobic010G202600--Sobic003G185200 Sobic010G202600--Sobic003G205501 Sobic010G202600--Sobic006G267300 Sobic009G000500 Sobic009G000500 Sobic010G202600--Sobic009G000500 Sobic008G174300 Sobic008G174300 Sobic010G202600--Sobic008G174300 Sobic003G081000 Sobic003G081000 Sobic010G202600--Sobic003G081000 Sobic007G011600 Sobic007G011600 Sobic004G096500--Sobic007G011600 Sobic001G303675 Sobic001G303675 Sobic004G096500--Sobic001G303675 Sobic006G222300 Sobic006G222300 Sobic004G096500--Sobic006G222300 Sobic006G052300 Sobic006G052300 Sobic004G096500--Sobic006G052300 Sobic008G011100 Sobic008G011100 Sobic004G096500--Sobic008G011100 Sobic004G096500--Sobic002G259800 Sobic004G096500--Sobic001G306900 Sobic005G079800 Sobic005G079800 Sobic004G096500--Sobic005G079800 Sobic001G261496 Sobic001G261496 Sobic004G096500--Sobic001G261496 Sobic002G320500--Sobic002G157000 Sobic002G320500--Sobic002G248400 Sobic009G065100 Sobic009G065100 Sobic002G320500--Sobic009G065100 Sobic009G210500 Sobic009G210500 Sobic002G320500--Sobic009G210500 Sobic006G133800 Sobic006G133800 Sobic002G320500--Sobic006G133800 Sobic001G107500 Sobic001G107500 Sobic002G320500--Sobic001G107500 Sobic002G320500--Sobic006G032400 Sobic002G320500--Sobic009G000500 Sobic001G090400 Sobic001G090400 Sobic002G320500--Sobic001G090400 Sobic009G198100 Sobic009G198100 Sobic002G034600--Sobic009G198100 Sobic007G119200 Sobic007G119200 Sobic002G034600--Sobic007G119200 Sobic002G034600--Sobic003G081000 Sobic001G473600 Sobic001G473600 Sobic002G034600--Sobic001G473600 Sobic003G355000 Sobic003G355000 Sobic002G034600--Sobic003G355000 Sobic007G118200 Sobic007G118200 Sobic002G034600--Sobic007G118200 Sobic002G264200 Sobic002G264200 Sobic002G034600--Sobic002G264200 Sobic001G356600 Sobic001G356600 Sobic002G034600--Sobic001G356600 Sobic002G034600--Sobic010G236400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.