Gene annotation
Transcriptome id Sobic.001G469800.1
Synonym ATPBRP, Sb01g044030, PBRP
Functional annotation transcription initiation factor IIB, putative, expressed
UniProt C5WUN9
Pfam PF00382
Panther DB PTHR11618 PTHR11618:SF26
NCBI CDD KOG1597; Transcription initiation factor TFIIB
KEGG Orthology K03124; TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
Gene Ontology GO:0017025; TBP-class protein binding GO:0008270zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0006352DNA-templated transcription, initiation


Orthologs (automatic annotation)
TAIR AT4G36650 : plant-specific TFIIB-related protein
RAP-DB (Rice) LOC_Os03g10070.1 : transcription initiation factor IIB, putative, expressed
MaizeGDB (Corn) Zm00025a003679 , Zm00025a053176
Brachypodium KQK23128
Barley HORVU4Hr1G071060.1 , HORVU4Hr1G071060.2 , HORVU4Hr1G071060.4 , HORVU4Hr1G071060.5 , HORVU4Hr1G071060.3
Wheat TraesCS4A02G042400 , TraesCS4D02G263200
Populus -


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cDNA sequences
Sobic.001G469800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
2 Sobic.006G248500 expressed protein -
3 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
4 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
5 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
6 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
7 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
8 Sobic.006G267300 expressed protein -
9 Sobic.008G127400 OsFBX252 - F-box domain containing protein, expressed -
10 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
11 Sobic.009G044900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
12 Sobic.002G034600 zinc ion binding protein, putative, expressed -
13 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
14 Sobic.001G131800 expressed protein K15186: ELL-associated factor
15 Sobic.006G065800 Trihelix Family(PubMedID : 24864043)@amino acid kinase, putative, expressed -
16 Sobic.009G195200 ESP1, putative, expressed -
17 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
18 Sobic.007G027700 expressed protein -
19 Sobic.003G205501 - -
20 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12


Gene co-expression network
sample Sobic001G469800 Sobic001G469800 Sobic010G202600 Sobic010G202600 Sobic001G469800--Sobic010G202600 Sobic006G248500 Sobic006G248500 Sobic001G469800--Sobic006G248500 Sobic002G259800 Sobic002G259800 Sobic001G469800--Sobic002G259800 Sobic001G395100 Sobic001G395100 Sobic001G469800--Sobic001G395100 Sobic003G433500 Sobic003G433500 Sobic001G469800--Sobic003G433500 Sobic008G129700 Sobic008G129700 Sobic001G469800--Sobic008G129700 Sobic007G111100 Sobic007G111100 Sobic001G469800--Sobic007G111100 Sobic006G267300 Sobic006G267300 Sobic001G469800--Sobic006G267300 Sobic008G127400 Sobic008G127400 Sobic001G469800--Sobic008G127400 Sobic010G202600--Sobic007G111100 Sobic010G202600--Sobic001G469800 Sobic001G131800 Sobic001G131800 Sobic010G202600--Sobic001G131800 Sobic003G185200 Sobic003G185200 Sobic010G202600--Sobic003G185200 Sobic003G205501 Sobic003G205501 Sobic010G202600--Sobic003G205501 Sobic010G202600--Sobic006G267300 Sobic009G000500 Sobic009G000500 Sobic010G202600--Sobic009G000500 Sobic008G174300 Sobic008G174300 Sobic010G202600--Sobic008G174300 Sobic003G081000 Sobic003G081000 Sobic010G202600--Sobic003G081000 Sobic006G248500--Sobic001G469800 Sobic006G248500--Sobic002G259800 Sobic006G248500--Sobic003G433500 Sobic009G151200 Sobic009G151200 Sobic006G248500--Sobic009G151200 Sobic008G058800 Sobic008G058800 Sobic006G248500--Sobic008G058800 Sobic004G013600 Sobic004G013600 Sobic006G248500--Sobic004G013600 Sobic007G026000 Sobic007G026000 Sobic006G248500--Sobic007G026000 Sobic004G347100 Sobic004G347100 Sobic006G248500--Sobic004G347100 Sobic009G044900 Sobic009G044900 Sobic006G248500--Sobic009G044900 Sobic009G195200 Sobic009G195200 Sobic002G259800--Sobic009G195200 Sobic001G306900 Sobic001G306900 Sobic002G259800--Sobic001G306900 Sobic005G015900 Sobic005G015900 Sobic002G259800--Sobic005G015900 Sobic003G394300 Sobic003G394300 Sobic002G259800--Sobic003G394300 Sobic002G259800--Sobic006G248500 Sobic001G246500 Sobic001G246500 Sobic002G259800--Sobic001G246500 Sobic005G084100 Sobic005G084100 Sobic002G259800--Sobic005G084100 Sobic002G423200 Sobic002G423200 Sobic002G259800--Sobic002G423200 Sobic004G156500 Sobic004G156500 Sobic002G259800--Sobic004G156500 Sobic006G121300 Sobic006G121300 Sobic001G395100--Sobic006G121300 Sobic002G034600 Sobic002G034600 Sobic001G395100--Sobic002G034600 Sobic007G191700 Sobic007G191700 Sobic001G395100--Sobic007G191700 Sobic001G473600 Sobic001G473600 Sobic001G395100--Sobic001G473600 Sobic001G395100--Sobic001G469800 Sobic007G027700 Sobic007G027700 Sobic001G395100--Sobic007G027700 Sobic007G056500 Sobic007G056500 Sobic001G395100--Sobic007G056500 Sobic001G395100--Sobic006G248500 Sobic001G042200 Sobic001G042200 Sobic001G395100--Sobic001G042200 Sobic003G433500--Sobic009G195200 Sobic003G355000 Sobic003G355000 Sobic003G433500--Sobic003G355000 Sobic002G045400 Sobic002G045400 Sobic003G433500--Sobic002G045400 Sobic009G216000 Sobic009G216000 Sobic003G433500--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic003G433500--Sobic003G354100 Sobic003G433500--Sobic006G267300 Sobic003G433500--Sobic006G248500 Sobic002G362300 Sobic002G362300 Sobic003G433500--Sobic002G362300 Sobic003G433500--Sobic002G259800 Sobic003G336800 Sobic003G336800 Sobic008G129700--Sobic003G336800 Sobic004G061900 Sobic004G061900 Sobic008G129700--Sobic004G061900 Sobic002G061400 Sobic002G061400 Sobic008G129700--Sobic002G061400 Sobic008G117200 Sobic008G117200 Sobic008G129700--Sobic008G117200 Sobic002G177400 Sobic002G177400 Sobic008G129700--Sobic002G177400 Sobic007G185900 Sobic007G185900 Sobic008G129700--Sobic007G185900 Sobic008G078100 Sobic008G078100 Sobic008G129700--Sobic008G078100 Sobic003G248500 Sobic003G248500 Sobic008G129700--Sobic003G248500 Sobic004G088400 Sobic004G088400 Sobic008G129700--Sobic004G088400 Sobic007G111100--Sobic010G202600 Sobic002G262700 Sobic002G262700 Sobic007G111100--Sobic002G262700 Sobic007G111100--Sobic006G267300 Sobic001G143500 Sobic001G143500 Sobic007G111100--Sobic001G143500 Sobic001G390500 Sobic001G390500 Sobic007G111100--Sobic001G390500 Sobic004G283000 Sobic004G283000 Sobic007G111100--Sobic004G283000 Sobic004G068500 Sobic004G068500 Sobic007G111100--Sobic004G068500 Sobic007G111100--Sobic001G131800 Sobic007G111100--Sobic003G205501 Sobic006G267300--Sobic007G111100 Sobic009G257800 Sobic009G257800 Sobic006G267300--Sobic009G257800 Sobic006G267300--Sobic003G205501 Sobic001G408700 Sobic001G408700 Sobic006G267300--Sobic001G408700 Sobic006G267300--Sobic009G195200 Sobic007G118200 Sobic007G118200 Sobic006G267300--Sobic007G118200 Sobic006G267300--Sobic010G202600 Sobic006G267300--Sobic003G433500 Sobic006G267300--Sobic008G127400 Sobic008G127400--Sobic007G027700 Sobic008G127400--Sobic006G267300 Sobic008G127400--Sobic003G205501 Sobic006G065800 Sobic006G065800 Sobic008G127400--Sobic006G065800 Sobic004G246700 Sobic004G246700 Sobic008G127400--Sobic004G246700 Sobic008G127400--Sobic008G058800 Sobic008G127400--Sobic002G423200 Sobic008G127400--Sobic006G248500 Sobic010G033400 Sobic010G033400 Sobic008G127400--Sobic010G033400
Octagon: transcription factors


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