Gene annotation
Transcriptome id Sobic.006G065800.1,Sobic.006G065800.2
Synonym SbTri27, Sb06g015280
Functional annotation Trihelix Family (PubMedID : 24864043)
amino acid kinase, putative, expressed
UniProt A0A1Z5RCP2 , C5YFR6
Pfam PF00696 PF13837
Panther DB PTHR21499 PTHR21499:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G10030 : aspartate/glutamate/uridylate kinase family protein
RAP-DB (Rice) LOC_Os04g33300.1 : amino acid kinase, putative, expressed
MaizeGDB (Corn) Zm00025a011560
Brachypodium PNT61004 , KQJ82445
Barley HORVU2Hr1G072140.9 , HORVU2Hr1G072140.1 , HORVU2Hr1G072140.2 , HORVU2Hr1G072140.3 , HORVU2Hr1G072140.4 , HORVU2Hr1G072140.5 , HORVU2Hr1G072140.7
Wheat TraesCS2B02G308200 , TraesCS2B02G308200 , TraesCS2D02G289700 , TraesCS2D02G289700 , TraesCS2A02G291700 , TraesCS2A02G291700
Populus -


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cDNA sequences
Sobic.006G065800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G127400 OsFBX252 - F-box domain containing protein, expressed -
2 Sobic.001G469800 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
3 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
4 Sobic.002G180000 protein kinase domain containing protein, expressed -
5 Sobic.006G267300 expressed protein -
6 Sobic.002G388200 LTV1, putative, expressed K14798: protein LTV1
7 Sobic.007G009400 bromodomain domain containing protein, expressed -
8 Sobic.007G027700 expressed protein -
9 Sobic.002G224700 NFKB, putative, expressed -
10 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
11 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
12 Sobic.002G365100 RNA recognition motif containing protein, putative, expressed -
13 Sobic.004G246700 zinc finger family protein, putative, expressed -
14 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
15 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
16 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
17 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
18 Sobic.002G262700 RNA recognition motif containing protein, putative, expressed K13155: U11/U12 small nuclear ribonucleoprotein 35 kDa protein
19 Sobic.002G423200 importin subunit alpha-1b, putative, expressed -
20 Sobic.002G272600 TBC domain containing protein, expressed -


Gene co-expression network
sample Sobic006G065800 Sobic006G065800 Sobic008G127400 Sobic008G127400 Sobic006G065800--Sobic008G127400 Sobic001G469800 Sobic001G469800 Sobic006G065800--Sobic001G469800 Sobic007G111100 Sobic007G111100 Sobic006G065800--Sobic007G111100 Sobic002G180000 Sobic002G180000 Sobic006G065800--Sobic002G180000 Sobic006G267300 Sobic006G267300 Sobic006G065800--Sobic006G267300 Sobic002G388200 Sobic002G388200 Sobic006G065800--Sobic002G388200 Sobic007G009400 Sobic007G009400 Sobic006G065800--Sobic007G009400 Sobic007G027700 Sobic007G027700 Sobic006G065800--Sobic007G027700 Sobic002G224700 Sobic002G224700 Sobic006G065800--Sobic002G224700 Sobic008G127400--Sobic007G027700 Sobic008G127400--Sobic006G267300 Sobic003G205501 Sobic003G205501 Sobic008G127400--Sobic003G205501 Sobic008G127400--Sobic006G065800 Sobic004G246700 Sobic004G246700 Sobic008G127400--Sobic004G246700 Sobic008G058800 Sobic008G058800 Sobic008G127400--Sobic008G058800 Sobic002G423200 Sobic002G423200 Sobic008G127400--Sobic002G423200 Sobic006G248500 Sobic006G248500 Sobic008G127400--Sobic006G248500 Sobic010G033400 Sobic010G033400 Sobic008G127400--Sobic010G033400 Sobic010G202600 Sobic010G202600 Sobic001G469800--Sobic010G202600 Sobic001G469800--Sobic006G248500 Sobic002G259800 Sobic002G259800 Sobic001G469800--Sobic002G259800 Sobic001G395100 Sobic001G395100 Sobic001G469800--Sobic001G395100 Sobic003G433500 Sobic003G433500 Sobic001G469800--Sobic003G433500 Sobic008G129700 Sobic008G129700 Sobic001G469800--Sobic008G129700 Sobic001G469800--Sobic007G111100 Sobic001G469800--Sobic006G267300 Sobic001G469800--Sobic008G127400 Sobic007G111100--Sobic010G202600 Sobic002G262700 Sobic002G262700 Sobic007G111100--Sobic002G262700 Sobic007G111100--Sobic006G267300 Sobic001G143500 Sobic001G143500 Sobic007G111100--Sobic001G143500 Sobic001G390500 Sobic001G390500 Sobic007G111100--Sobic001G390500 Sobic004G283000 Sobic004G283000 Sobic007G111100--Sobic004G283000 Sobic004G068500 Sobic004G068500 Sobic007G111100--Sobic004G068500 Sobic001G131800 Sobic001G131800 Sobic007G111100--Sobic001G131800 Sobic007G111100--Sobic003G205501 Sobic002G180000--Sobic007G111100 Sobic002G180000--Sobic001G143500 Sobic008G139700 Sobic008G139700 Sobic002G180000--Sobic008G139700 Sobic002G180000--Sobic006G065800 Sobic002G180000--Sobic006G267300 Sobic002G180000--Sobic001G131800 Sobic002G272600 Sobic002G272600 Sobic002G180000--Sobic002G272600 Sobic001G080000 Sobic001G080000 Sobic002G180000--Sobic001G080000 Sobic003G405700 Sobic003G405700 Sobic002G180000--Sobic003G405700 Sobic006G267300--Sobic007G111100 Sobic009G257800 Sobic009G257800 Sobic006G267300--Sobic009G257800 Sobic006G267300--Sobic003G205501 Sobic001G408700 Sobic001G408700 Sobic006G267300--Sobic001G408700 Sobic009G195200 Sobic009G195200 Sobic006G267300--Sobic009G195200 Sobic007G118200 Sobic007G118200 Sobic006G267300--Sobic007G118200 Sobic006G267300--Sobic010G202600 Sobic006G267300--Sobic003G433500 Sobic006G267300--Sobic008G127400 Sobic002G388200--Sobic004G283000 Sobic009G056800 Sobic009G056800 Sobic002G388200--Sobic009G056800 Sobic006G173100 Sobic006G173100 Sobic002G388200--Sobic006G173100 Sobic003G187400 Sobic003G187400 Sobic002G388200--Sobic003G187400 Sobic001G466700 Sobic001G466700 Sobic002G388200--Sobic001G466700 Sobic002G388200--Sobic007G118200 Sobic008G174300 Sobic008G174300 Sobic002G388200--Sobic008G174300 Sobic008G129100 Sobic008G129100 Sobic002G388200--Sobic008G129100 Sobic003G081000 Sobic003G081000 Sobic002G388200--Sobic003G081000 Sobic003G241200 Sobic003G241200 Sobic007G009400--Sobic003G241200 Sobic003G401100 Sobic003G401100 Sobic007G009400--Sobic003G401100 Sobic004G205600 Sobic004G205600 Sobic007G009400--Sobic004G205600 Sobic010G101800 Sobic010G101800 Sobic007G009400--Sobic010G101800 Sobic007G104800 Sobic007G104800 Sobic007G009400--Sobic007G104800 Sobic004G325400 Sobic004G325400 Sobic007G009400--Sobic004G325400 Sobic007G009400--Sobic002G388200 Sobic001G409600 Sobic001G409600 Sobic007G009400--Sobic001G409600 Sobic007G009400--Sobic003G081000 Sobic007G027700--Sobic008G127400 Sobic007G027700--Sobic003G401100 Sobic003G412300 Sobic003G412300 Sobic007G027700--Sobic003G412300 Sobic007G027700--Sobic001G143500 Sobic007G027700--Sobic004G325400 Sobic005G216300 Sobic005G216300 Sobic007G027700--Sobic005G216300 Sobic007G027700--Sobic001G395100 Sobic010G279900 Sobic010G279900 Sobic007G027700--Sobic010G279900 Sobic007G027700--Sobic006G267300 Sobic002G224700--Sobic006G248500 Sobic002G224700--Sobic008G127400 Sobic002G224700--Sobic007G027700 Sobic001G029400 Sobic001G029400 Sobic002G224700--Sobic001G029400 Sobic002G224700--Sobic004G246700 Sobic002G224700--Sobic007G111100 Sobic002G058300 Sobic002G058300 Sobic002G224700--Sobic002G058300 Sobic002G224700--Sobic001G143500 Sobic002G224700--Sobic006G065800
Octagon: transcription factors


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