Gene annotation
Transcriptome id Sobic.010G171100.1
Synonym Sb10g022380
Functional annotation RNA recognition motif containing protein, expressed
UniProt C5Z4R7
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF318
NCBI CDD KOG0106; Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) KOG0131Splicing factor 3b, subunit 4
KEGG Orthology K12741; heterogeneous nuclear ribonucleoprotein A1/A3
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G13224 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os02g12850.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a034555 , Zm00025a042303 , Zm00025a050991
Brachypodium KQK17939 , KQK17940 , KQK17941 , PNT75756 , PNT75755 , KQJ94080
Barley HORVU7Hr1G087550.10 , HORVU7Hr1G087550.11 , HORVU6Hr1G040220.4 , HORVU6Hr1G040220.6 , HORVU6Hr1G040220.7 , HORVU6Hr1G040220.1 , HORVU6Hr1G040220.2 , HORVU6Hr1G040220.3 , HORVU6Hr1G040220.8 , HORVU6Hr1G040220.9 , HORVU7Hr1G087550.2 , HORVU7Hr1G087550.3 , HORVU7Hr1G087550.6 , HORVU7Hr1G087550.8 , HORVU6Hr1G040220.10 , HORVU6Hr1G040220.11 , HORVU7Hr1G087550.1 , HORVU7Hr1G087550.7 , HORVU7Hr1G087550.4 , HORVU7Hr1G087550.5 , HORVU7Hr1G087550.9
Wheat TraesCS6B02G217500 , TraesCS6D02G173900 , TraesCS7D02G362200 , TraesCS7A02G360900 , TraesCS7B02G266900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G171100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G095300 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
2 Sobic.003G122500 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
3 Sobic.003G123000 splicing factor 3 subunit 1, putative, expressed K12825: SF3A1, splicing factor 3A subunit 1
4 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
5 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
6 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
7 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
8 Sobic.002G058700 RNA recognition motif containing protein, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
9 Sobic.007G084100 expressed protein -
10 Sobic.001G119900 - K12858: DDX23, ATP-dependent RNA helicase DDX23/PRP28
11 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
12 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1
13 Sobic.003G058900 TATA-binding protein-associated factor 2N, putative, expressed K13098: TLS, RNA-binding protein FUS
14 Sobic.009G105800 FHA domain containing protein, putative, expressed K13108: smad nuclear-interacting protein 1
15 Sobic.004G237100 AP2/EREBP transcription factor BABY BOOM, putative, expressed -
16 Sobic.009G182600 SH2 motif, putative, expressed K11292: SUPT6H, transcription elongation factor SPT6
17 Sobic.002G180000 protein kinase domain containing protein, expressed -
18 Sobic.007G183300 expressed protein -
19 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
20 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42


Gene co-expression network
sample Sobic010G171100 Sobic010G171100 Sobic004G095300 Sobic004G095300 Sobic010G171100--Sobic004G095300 Sobic003G122500 Sobic003G122500 Sobic010G171100--Sobic003G122500 Sobic003G123000 Sobic003G123000 Sobic010G171100--Sobic003G123000 Sobic010G228700 Sobic010G228700 Sobic010G171100--Sobic010G228700 Sobic005G220000 Sobic005G220000 Sobic010G171100--Sobic005G220000 Sobic010G085200 Sobic010G085200 Sobic010G171100--Sobic010G085200 Sobic001G088100 Sobic001G088100 Sobic010G171100--Sobic001G088100 Sobic002G058700 Sobic002G058700 Sobic010G171100--Sobic002G058700 Sobic007G084100 Sobic007G084100 Sobic010G171100--Sobic007G084100 Sobic004G095300--Sobic010G171100 Sobic004G095300--Sobic003G123000 Sobic001G003500 Sobic001G003500 Sobic004G095300--Sobic001G003500 Sobic002G092300 Sobic002G092300 Sobic004G095300--Sobic002G092300 Sobic001G473600 Sobic001G473600 Sobic004G095300--Sobic001G473600 Sobic004G095300--Sobic001G088100 Sobic004G095300--Sobic005G220000 Sobic004G095300--Sobic010G085200 Sobic002G180000 Sobic002G180000 Sobic004G095300--Sobic002G180000 Sobic003G122500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic003G122500--Sobic005G160400 Sobic003G122500--Sobic003G123000 Sobic001G241100 Sobic001G241100 Sobic003G122500--Sobic001G241100 Sobic001G119900 Sobic001G119900 Sobic003G122500--Sobic001G119900 Sobic003G122500--Sobic010G171100 Sobic002G047700 Sobic002G047700 Sobic003G122500--Sobic002G047700 Sobic006G199200 Sobic006G199200 Sobic003G122500--Sobic006G199200 Sobic004G257100 Sobic004G257100 Sobic003G122500--Sobic004G257100 Sobic003G123000--Sobic003G122500 Sobic003G123000--Sobic004G095300 Sobic001G222900 Sobic001G222900 Sobic003G123000--Sobic001G222900 Sobic003G123000--Sobic010G171100 Sobic002G280600 Sobic002G280600 Sobic003G123000--Sobic002G280600 Sobic004G246700 Sobic004G246700 Sobic003G123000--Sobic004G246700 Sobic001G218800 Sobic001G218800 Sobic003G123000--Sobic001G218800 Sobic008G165700 Sobic008G165700 Sobic003G123000--Sobic008G165700 Sobic003G123000--Sobic001G473600 Sobic001G544500 Sobic001G544500 Sobic010G228700--Sobic001G544500 Sobic002G040800 Sobic002G040800 Sobic010G228700--Sobic002G040800 Sobic009G105800 Sobic009G105800 Sobic010G228700--Sobic009G105800 Sobic009G105200 Sobic009G105200 Sobic010G228700--Sobic009G105200 Sobic010G228700--Sobic010G171100 Sobic007G000300 Sobic007G000300 Sobic010G228700--Sobic007G000300 Sobic002G238000 Sobic002G238000 Sobic010G228700--Sobic002G238000 Sobic010G228700--Sobic001G119900 Sobic006G125900 Sobic006G125900 Sobic010G228700--Sobic006G125900 Sobic001G111600 Sobic001G111600 Sobic005G220000--Sobic001G111600 Sobic002G145800 Sobic002G145800 Sobic005G220000--Sobic002G145800 Sobic007G183900 Sobic007G183900 Sobic005G220000--Sobic007G183900 Sobic005G128400 Sobic005G128400 Sobic005G220000--Sobic005G128400 Sobic003G293200 Sobic003G293200 Sobic005G220000--Sobic003G293200 Sobic007G183300 Sobic007G183300 Sobic005G220000--Sobic007G183300 Sobic003G062300 Sobic003G062300 Sobic005G220000--Sobic003G062300 Sobic005G220000--Sobic010G085200 Sobic001G026500 Sobic001G026500 Sobic005G220000--Sobic001G026500 Sobic010G085200--Sobic005G220000 Sobic002G412700 Sobic002G412700 Sobic010G085200--Sobic002G412700 Sobic006G233000 Sobic006G233000 Sobic010G085200--Sobic006G233000 Sobic009G007700 Sobic009G007700 Sobic010G085200--Sobic009G007700 Sobic010G279700 Sobic010G279700 Sobic010G085200--Sobic010G279700 Sobic010G239800 Sobic010G239800 Sobic010G085200--Sobic010G239800 Sobic007G011600 Sobic007G011600 Sobic010G085200--Sobic007G011600 Sobic003G314700 Sobic003G314700 Sobic010G085200--Sobic003G314700 Sobic003G209400 Sobic003G209400 Sobic010G085200--Sobic003G209400 Sobic009G005500 Sobic009G005500 Sobic001G088100--Sobic009G005500 Sobic007G119200 Sobic007G119200 Sobic001G088100--Sobic007G119200 Sobic010G069100 Sobic010G069100 Sobic001G088100--Sobic010G069100 Sobic010G236400 Sobic010G236400 Sobic001G088100--Sobic010G236400 Sobic003G394300 Sobic003G394300 Sobic001G088100--Sobic003G394300 Sobic007G105100 Sobic007G105100 Sobic001G088100--Sobic007G105100 Sobic001G241200 Sobic001G241200 Sobic001G088100--Sobic001G241200 Sobic004G274200 Sobic004G274200 Sobic001G088100--Sobic004G274200 Sobic003G408600 Sobic003G408600 Sobic001G088100--Sobic003G408600 Sobic009G101300 Sobic009G101300 Sobic002G058700--Sobic009G101300 Sobic001G096000 Sobic001G096000 Sobic002G058700--Sobic001G096000 Sobic007G013300 Sobic007G013300 Sobic002G058700--Sobic007G013300 Sobic001G431000 Sobic001G431000 Sobic002G058700--Sobic001G431000 Sobic002G058700--Sobic010G171100 Sobic002G058700--Sobic001G003500 Sobic002G071000 Sobic002G071000 Sobic002G058700--Sobic002G071000 Sobic002G058700--Sobic004G095300 Sobic004G117800 Sobic004G117800 Sobic002G058700--Sobic004G117800 Sobic010G237900 Sobic010G237900 Sobic007G084100--Sobic010G237900 Sobic007G084100--Sobic005G160400 Sobic007G084100--Sobic003G122500 Sobic007G084100--Sobic001G473600 Sobic001G114500 Sobic001G114500 Sobic007G084100--Sobic001G114500 Sobic007G084100--Sobic007G183900 Sobic003G352200 Sobic003G352200 Sobic007G084100--Sobic003G352200 Sobic005G172500 Sobic005G172500 Sobic007G084100--Sobic005G172500 Sobic004G185800 Sobic004G185800 Sobic007G084100--Sobic004G185800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.