Gene annotation
Transcriptome id Sobic.002G058700.2,Sobic.002G058700.4,Sobic.002G058700.3
Synonym Sb02g004930
Functional annotation RNA recognition motif containing protein, expressed
UniProt C5XB79
Pfam PF00098 PF00076
Panther DB PTHR24012
NCBI CDD KOG0109; RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains
KEGG Orthology K12885; RBMX, heterogeneous nuclear ribonucleoprotein G
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G04280 : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
RAP-DB (Rice) LOC_Os07g08960.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a016065 , Zm00025a045257
Brachypodium KQK20515
Barley -
Wheat TraesCS2B02G259400 , TraesCS2A02G237400 , TraesCS2D02G238900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G101300 phox domain-containing protein, putative, expressed -
2 Sobic.001G096000 CWF19-like 2, cell cycle control, putative, expressed -
3 Sobic.007G013300 protein kinase family protein, putative, expressed -
4 Sobic.001G431000 Sel1 repeat domain containing protein, putative, expressed K14026: SEL1, SEL1 protein
5 Sobic.010G171100 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
6 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1
7 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
8 Sobic.004G095300 RNA recognition motif containing protein, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
9 Sobic.004G117800 Ser/Thr protein phosphatase family protein, putative, expressed K18467: vacuolar protein sorting-associated protein 29
10 Sobic.003G122500 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
11 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
12 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
13 Sobic.006G087400 expressed protein -
14 Sobic.003G058900 TATA-binding protein-associated factor 2N, putative, expressed K13098: TLS, RNA-binding protein FUS
15 Sobic.009G131900 - K18177: cytochrome c oxidase assembly factor 4
16 Sobic.005G074500 VHS and GAT domain containing protein, expressed -
17 Sobic.003G123000 splicing factor 3 subunit 1, putative, expressed K12825: SF3A1, splicing factor 3A subunit 1
18 Sobic.002G295500 expressed protein -
19 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
20 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14


Gene co-expression network
sample Sobic002G058700 Sobic002G058700 Sobic009G101300 Sobic009G101300 Sobic002G058700--Sobic009G101300 Sobic001G096000 Sobic001G096000 Sobic002G058700--Sobic001G096000 Sobic007G013300 Sobic007G013300 Sobic002G058700--Sobic007G013300 Sobic001G431000 Sobic001G431000 Sobic002G058700--Sobic001G431000 Sobic010G171100 Sobic010G171100 Sobic002G058700--Sobic010G171100 Sobic001G003500 Sobic001G003500 Sobic002G058700--Sobic001G003500 Sobic002G071000 Sobic002G071000 Sobic002G058700--Sobic002G071000 Sobic004G095300 Sobic004G095300 Sobic002G058700--Sobic004G095300 Sobic004G117800 Sobic004G117800 Sobic002G058700--Sobic004G117800 Sobic009G101300--Sobic002G058700 Sobic009G101300--Sobic001G096000 Sobic001G015800 Sobic001G015800 Sobic009G101300--Sobic001G015800 Sobic008G124900 Sobic008G124900 Sobic009G101300--Sobic008G124900 Sobic009G131900 Sobic009G131900 Sobic009G101300--Sobic009G131900 Sobic001G420800 Sobic001G420800 Sobic009G101300--Sobic001G420800 Sobic003G104000 Sobic003G104000 Sobic009G101300--Sobic003G104000 Sobic001G206900 Sobic001G206900 Sobic009G101300--Sobic001G206900 Sobic007G180600 Sobic007G180600 Sobic009G101300--Sobic007G180600 Sobic006G131000 Sobic006G131000 Sobic001G096000--Sobic006G131000 Sobic001G096000--Sobic008G124900 Sobic006G126100 Sobic006G126100 Sobic001G096000--Sobic006G126100 Sobic003G332500 Sobic003G332500 Sobic001G096000--Sobic003G332500 Sobic001G096000--Sobic003G104000 Sobic003G337300 Sobic003G337300 Sobic001G096000--Sobic003G337300 Sobic001G477700 Sobic001G477700 Sobic001G096000--Sobic001G477700 Sobic001G163400 Sobic001G163400 Sobic001G096000--Sobic001G163400 Sobic001G362200 Sobic001G362200 Sobic001G096000--Sobic001G362200 Sobic005G074100 Sobic005G074100 Sobic007G013300--Sobic005G074100 Sobic007G013300--Sobic001G206900 Sobic001G145500 Sobic001G145500 Sobic007G013300--Sobic001G145500 Sobic007G013300--Sobic002G058700 Sobic003G299000 Sobic003G299000 Sobic007G013300--Sobic003G299000 Sobic004G010900 Sobic004G010900 Sobic007G013300--Sobic004G010900 Sobic009G149500 Sobic009G149500 Sobic007G013300--Sobic009G149500 Sobic004G082900 Sobic004G082900 Sobic007G013300--Sobic004G082900 Sobic002G342500 Sobic002G342500 Sobic007G013300--Sobic002G342500 Sobic001G431000--Sobic006G126100 Sobic006G073200 Sobic006G073200 Sobic001G431000--Sobic006G073200 Sobic001G227400 Sobic001G227400 Sobic001G431000--Sobic001G227400 Sobic006G077200 Sobic006G077200 Sobic001G431000--Sobic006G077200 Sobic001G404600 Sobic001G404600 Sobic001G431000--Sobic001G404600 Sobic004G257100 Sobic004G257100 Sobic001G431000--Sobic004G257100 Sobic008G157200 Sobic008G157200 Sobic001G431000--Sobic008G157200 Sobic004G241900 Sobic004G241900 Sobic001G431000--Sobic004G241900 Sobic001G449900 Sobic001G449900 Sobic001G431000--Sobic001G449900 Sobic010G171100--Sobic004G095300 Sobic003G122500 Sobic003G122500 Sobic010G171100--Sobic003G122500 Sobic003G123000 Sobic003G123000 Sobic010G171100--Sobic003G123000 Sobic010G228700 Sobic010G228700 Sobic010G171100--Sobic010G228700 Sobic005G220000 Sobic005G220000 Sobic010G171100--Sobic005G220000 Sobic010G085200 Sobic010G085200 Sobic010G171100--Sobic010G085200 Sobic001G088100 Sobic001G088100 Sobic010G171100--Sobic001G088100 Sobic010G171100--Sobic002G058700 Sobic007G084100 Sobic007G084100 Sobic010G171100--Sobic007G084100 Sobic004G321700 Sobic004G321700 Sobic001G003500--Sobic004G321700 Sobic008G147200 Sobic008G147200 Sobic001G003500--Sobic008G147200 Sobic002G052700 Sobic002G052700 Sobic001G003500--Sobic002G052700 Sobic001G291800 Sobic001G291800 Sobic001G003500--Sobic001G291800 Sobic001G003500--Sobic005G220000 Sobic010G007100 Sobic010G007100 Sobic001G003500--Sobic010G007100 Sobic004G357400 Sobic004G357400 Sobic001G003500--Sobic004G357400 Sobic001G003500--Sobic004G095300 Sobic006G125900 Sobic006G125900 Sobic001G003500--Sobic006G125900 Sobic007G079300 Sobic007G079300 Sobic002G071000--Sobic007G079300 Sobic001G234200 Sobic001G234200 Sobic002G071000--Sobic001G234200 Sobic004G348900 Sobic004G348900 Sobic002G071000--Sobic004G348900 Sobic006G010000 Sobic006G010000 Sobic002G071000--Sobic006G010000 Sobic009G249100 Sobic009G249100 Sobic002G071000--Sobic009G249100 Sobic003G293300 Sobic003G293300 Sobic002G071000--Sobic003G293300 Sobic003G117300 Sobic003G117300 Sobic002G071000--Sobic003G117300 Sobic002G071000--Sobic004G082900 Sobic006G049700 Sobic006G049700 Sobic002G071000--Sobic006G049700 Sobic004G095300--Sobic010G171100 Sobic004G095300--Sobic003G123000 Sobic004G095300--Sobic001G003500 Sobic002G092300 Sobic002G092300 Sobic004G095300--Sobic002G092300 Sobic001G473600 Sobic001G473600 Sobic004G095300--Sobic001G473600 Sobic004G095300--Sobic001G088100 Sobic004G095300--Sobic005G220000 Sobic004G095300--Sobic010G085200 Sobic002G180000 Sobic002G180000 Sobic004G095300--Sobic002G180000 Sobic006G170200 Sobic006G170200 Sobic004G117800--Sobic006G170200 Sobic008G051100 Sobic008G051100 Sobic004G117800--Sobic008G051100 Sobic009G029700 Sobic009G029700 Sobic004G117800--Sobic009G029700 Sobic001G280400 Sobic001G280400 Sobic004G117800--Sobic001G280400 Sobic004G136500 Sobic004G136500 Sobic004G117800--Sobic004G136500 Sobic001G008800 Sobic001G008800 Sobic004G117800--Sobic001G008800 Sobic001G132900 Sobic001G132900 Sobic004G117800--Sobic001G132900 Sobic004G117800--Sobic002G058700 Sobic003G058900 Sobic003G058900 Sobic004G117800--Sobic003G058900
Octagon: transcription factors


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