Gene annotation
Transcriptome id Sobic.002G071000.1,Sobic.002G071000.2
Synonym Sb02g005950
Functional annotation -
UniProt A0A1B6Q9N4 , A0A1B6Q9P8
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF235
NCBI CDD -
KEGG Orthology K11594; DDX3X, ATP-dependent RNA helicase DDX3X
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G42520 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g59050.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a016013 , Zm00025a016012
Brachypodium KQK12606 , KQK12607
Barley HORVU5Hr1G109340.8 , HORVU5Hr1G109340.9 , HORVU5Hr1G109340.1 , HORVU5Hr1G109340.2 , HORVU5Hr1G109340.3 , HORVU5Hr1G109340.4 , HORVU5Hr1G109340.6 , HORVU5Hr1G109340.7 , HORVU5Hr1G109340.5 , HORVU5Hr1G109340.10 , HORVU5Hr1G109340.11
Wheat TraesCS5D02G465100 , TraesCS5B02G464500 , TraesCS5B02G464500 , TraesCS5A02G454600
Populus -


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cDNA sequences
Sobic.002G071000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G079300 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
2 Sobic.001G234200 actin, putative, expressed K16615: actin-related protein 7, plant
3 Sobic.004G348900 expressed protein -
4 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
5 Sobic.009G249100 CPuORF17 - conserved peptide uORF-containing transcript, expressed -
6 Sobic.003G293300 nucleoporin, putative, expressed K14304: nuclear pore complex protein Nup85
7 Sobic.003G117300 LSM domain containing protein, expressed K12623: U6 snRNA-associated Sm-like protein LSm4
8 Sobic.004G082900 26S protease regulatory subunit, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
9 Sobic.006G049700 SAM domain family protein, expressed -
10 Sobic.002G262000 ankyrin repeat domain containing protein, putative, expressed -
11 Sobic.009G149500 coiled-coil domain-containing protein 47 precursor, putative, expressed -
12 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
13 Sobic.001G417900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
14 Sobic.003G218300 C-5 cytosine-specific DNA methylase, putative, expressed K15336: TRDMT1, tRNA (cytosine38-C5)-methyltransferase
15 Sobic.008G118900 OsAPRL6 adenosine 5\'-phosphosulfate reductase-like OsAPRL6, expressed -
16 Sobic.004G216400 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
17 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
18 Sobic.006G002201 - -
19 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
20 Sobic.001G082100 TIP41, putative, expressed K17607: TIPRL, type 2A phosphatase activator TIP41


Gene co-expression network
sample Sobic002G071000 Sobic002G071000 Sobic007G079300 Sobic007G079300 Sobic002G071000--Sobic007G079300 Sobic001G234200 Sobic001G234200 Sobic002G071000--Sobic001G234200 Sobic004G348900 Sobic004G348900 Sobic002G071000--Sobic004G348900 Sobic006G010000 Sobic006G010000 Sobic002G071000--Sobic006G010000 Sobic009G249100 Sobic009G249100 Sobic002G071000--Sobic009G249100 Sobic003G293300 Sobic003G293300 Sobic002G071000--Sobic003G293300 Sobic003G117300 Sobic003G117300 Sobic002G071000--Sobic003G117300 Sobic004G082900 Sobic004G082900 Sobic002G071000--Sobic004G082900 Sobic006G049700 Sobic006G049700 Sobic002G071000--Sobic006G049700 Sobic007G079300--Sobic002G071000 Sobic007G079300--Sobic004G348900 Sobic001G283200 Sobic001G283200 Sobic007G079300--Sobic001G283200 Sobic007G079300--Sobic001G234200 Sobic001G206900 Sobic001G206900 Sobic007G079300--Sobic001G206900 Sobic007G079300--Sobic004G082900 Sobic001G444300 Sobic001G444300 Sobic007G079300--Sobic001G444300 Sobic002G020700 Sobic002G020700 Sobic007G079300--Sobic002G020700 Sobic001G014800 Sobic001G014800 Sobic007G079300--Sobic001G014800 Sobic001G234200--Sobic002G071000 Sobic001G234200--Sobic006G049700 Sobic001G234200--Sobic006G010000 Sobic001G234200--Sobic003G293300 Sobic001G234200--Sobic007G079300 Sobic001G114500 Sobic001G114500 Sobic001G234200--Sobic001G114500 Sobic001G459100 Sobic001G459100 Sobic001G234200--Sobic001G459100 Sobic002G083900 Sobic002G083900 Sobic001G234200--Sobic002G083900 Sobic003G264200 Sobic003G264200 Sobic001G234200--Sobic003G264200 Sobic004G348900--Sobic001G283200 Sobic003G077900 Sobic003G077900 Sobic004G348900--Sobic003G077900 Sobic004G181900 Sobic004G181900 Sobic004G348900--Sobic004G181900 Sobic001G404100 Sobic001G404100 Sobic004G348900--Sobic001G404100 Sobic004G348900--Sobic001G206900 Sobic001G085100 Sobic001G085100 Sobic004G348900--Sobic001G085100 Sobic002G400000 Sobic002G400000 Sobic004G348900--Sobic002G400000 Sobic004G348900--Sobic001G444300 Sobic001G323000 Sobic001G323000 Sobic004G348900--Sobic001G323000 Sobic006G233300 Sobic006G233300 Sobic006G010000--Sobic006G233300 Sobic006G233000 Sobic006G233000 Sobic006G010000--Sobic006G233000 Sobic008G153500 Sobic008G153500 Sobic006G010000--Sobic008G153500 Sobic006G010000--Sobic003G293300 Sobic010G186600 Sobic010G186600 Sobic006G010000--Sobic010G186600 Sobic006G010000--Sobic001G114500 Sobic001G259000 Sobic001G259000 Sobic006G010000--Sobic001G259000 Sobic006G010000--Sobic001G234200 Sobic006G010000--Sobic002G071000 Sobic009G249100--Sobic002G071000 Sobic009G249100--Sobic001G283200 Sobic001G458700 Sobic001G458700 Sobic009G249100--Sobic001G458700 Sobic009G249100--Sobic007G079300 Sobic001G022800 Sobic001G022800 Sobic009G249100--Sobic001G022800 Sobic008G004400 Sobic008G004400 Sobic009G249100--Sobic008G004400 Sobic001G078800 Sobic001G078800 Sobic009G249100--Sobic001G078800 Sobic009G249100--Sobic004G082900 Sobic009G249100--Sobic001G085100 Sobic001G251100 Sobic001G251100 Sobic003G293300--Sobic001G251100 Sobic003G293300--Sobic006G010000 Sobic003G293300--Sobic002G020700 Sobic001G333100 Sobic001G333100 Sobic003G293300--Sobic001G333100 Sobic003G218300 Sobic003G218300 Sobic003G293300--Sobic003G218300 Sobic003G293300--Sobic002G071000 Sobic003G293300--Sobic001G234200 Sobic003G113800 Sobic003G113800 Sobic003G293300--Sobic003G113800 Sobic008G088806 Sobic008G088806 Sobic003G293300--Sobic008G088806 Sobic004G060600 Sobic004G060600 Sobic003G117300--Sobic004G060600 Sobic001G428100 Sobic001G428100 Sobic003G117300--Sobic001G428100 Sobic003G117300--Sobic002G071000 Sobic003G117300--Sobic001G404100 Sobic002G262000 Sobic002G262000 Sobic003G117300--Sobic002G262000 Sobic001G501200 Sobic001G501200 Sobic003G117300--Sobic001G501200 Sobic009G130400 Sobic009G130400 Sobic003G117300--Sobic009G130400 Sobic006G281200 Sobic006G281200 Sobic003G117300--Sobic006G281200 Sobic003G117300--Sobic003G077900 Sobic006G252200 Sobic006G252200 Sobic004G082900--Sobic006G252200 Sobic004G082900--Sobic001G283200 Sobic004G082900--Sobic001G458700 Sobic004G010900 Sobic004G010900 Sobic004G082900--Sobic004G010900 Sobic007G176200 Sobic007G176200 Sobic004G082900--Sobic007G176200 Sobic005G105500 Sobic005G105500 Sobic004G082900--Sobic005G105500 Sobic001G145500 Sobic001G145500 Sobic004G082900--Sobic001G145500 Sobic009G149500 Sobic009G149500 Sobic004G082900--Sobic009G149500 Sobic004G082900--Sobic001G444300 Sobic009G222500 Sobic009G222500 Sobic006G049700--Sobic009G222500 Sobic007G166400 Sobic007G166400 Sobic006G049700--Sobic007G166400 Sobic006G049700--Sobic003G264200 Sobic006G101700 Sobic006G101700 Sobic006G049700--Sobic006G101700 Sobic007G167900 Sobic007G167900 Sobic006G049700--Sobic007G167900 Sobic004G226800 Sobic004G226800 Sobic006G049700--Sobic004G226800 Sobic010G027600 Sobic010G027600 Sobic006G049700--Sobic010G027600 Sobic002G113900 Sobic002G113900 Sobic006G049700--Sobic002G113900 Sobic004G356900 Sobic004G356900 Sobic006G049700--Sobic004G356900
Octagon: transcription factors


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