Gene annotation
Transcriptome id Sobic.003G218300.1,Sobic.003G218300.2
Synonym DNMT2, AtDNMT2
Functional annotation C-5 cytosine-specific DNA methylase, putative, expressed
UniProt A0A1B6Q4Q2 , A0A1B6Q4N8
Pfam PF00145
Panther DB PTHR10629
NCBI CDD KOG0919; C-5 cytosine-specific DNA methylase
KEGG Orthology K15336; TRDMT1, tRNA (cytosine38-C5)-methyltransferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G25480 : DNA methyltransferase-2
RAP-DB (Rice) LOC_Os01g42630.3,LOC_Os01g42630.1 : C-5 cytosine-specific DNA methylase, putative, expressed
MaizeGDB (Corn) Zm00025a038489
Brachypodium KQK08691 , PNT72377
Barley HORVU3Hr1G053540.30 , HORVU3Hr1G053540.31 , HORVU3Hr1G053540.32 , HORVU3Hr1G053540.35 , HORVU3Hr1G053540.36 , HORVU3Hr1G053540.37 , HORVU3Hr1G053540.8 , HORVU3Hr1G053540.9 , HORVU3Hr1G053540.3 , HORVU3Hr1G053540.4 , HORVU3Hr1G053540.5 , HORVU3Hr1G053540.6 , HORVU3Hr1G053540.7 , HORVU3Hr1G053540.28 , HORVU3Hr1G053540.23 , HORVU3Hr1G053540.22 , HORVU3Hr1G053540.21 , HORVU3Hr1G053540.20 , HORVU3Hr1G053540.27 , HORVU3Hr1G053540.26 , HORVU3Hr1G053540.25 , HORVU3Hr1G053540.24 , HORVU3Hr1G053540.13 , HORVU3Hr1G053540.11 , HORVU3Hr1G053540.16 , HORVU3Hr1G053540.17 , HORVU3Hr1G053540.14 , HORVU3Hr1G053540.15 , HORVU3Hr1G053540.18 , HORVU3Hr1G053540.19
Wheat TraesCS3D02G233600 , TraesCS3B02G249200 , TraesCS3A02G219000
Populus -


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cDNA sequences
Sobic.003G218300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G293300 nucleoporin, putative, expressed K14304: nuclear pore complex protein Nup85
2 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
3 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
4 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
5 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
6 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
7 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
8 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
9 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
10 Sobic.009G143700 no apical meristem protein, putative, expressed -
11 Sobic.002G263600 expressed protein -
12 Sobic.006G196300 glycosyl transferase, group 1 domain containing protein, expressed K03843: alpha-1,3/alpha-1,6-mannosyltransferase
13 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
15 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
16 Sobic.005G172500 WD repeat-containing protein, putative, expressed K08266: MLST8, target of rapamycin complex subunit LST8
17 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
18 Sobic.007G079300 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
19 Sobic.002G371300 peroxisome assembly protein, putative, expressed K13346: peroxin-10
20 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -


Gene co-expression network
sample Sobic003G218300 Sobic003G218300 Sobic003G293300 Sobic003G293300 Sobic003G218300--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic003G218300--Sobic007G054800 Sobic003G104000 Sobic003G104000 Sobic003G218300--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic003G218300--Sobic002G256700 Sobic002G020700 Sobic002G020700 Sobic003G218300--Sobic002G020700 Sobic001G251100 Sobic001G251100 Sobic003G218300--Sobic001G251100 Sobic003G046300 Sobic003G046300 Sobic003G218300--Sobic003G046300 Sobic003G221400 Sobic003G221400 Sobic003G218300--Sobic003G221400 Sobic002G142900 Sobic002G142900 Sobic003G218300--Sobic002G142900 Sobic003G293300--Sobic001G251100 Sobic006G010000 Sobic006G010000 Sobic003G293300--Sobic006G010000 Sobic003G293300--Sobic002G020700 Sobic001G333100 Sobic001G333100 Sobic003G293300--Sobic001G333100 Sobic003G293300--Sobic003G218300 Sobic002G071000 Sobic002G071000 Sobic003G293300--Sobic002G071000 Sobic001G234200 Sobic001G234200 Sobic003G293300--Sobic001G234200 Sobic003G113800 Sobic003G113800 Sobic003G293300--Sobic003G113800 Sobic008G088806 Sobic008G088806 Sobic003G293300--Sobic008G088806 Sobic007G054800--Sobic003G221400 Sobic001G110600 Sobic001G110600 Sobic007G054800--Sobic001G110600 Sobic001G004400 Sobic001G004400 Sobic007G054800--Sobic001G004400 Sobic005G162500 Sobic005G162500 Sobic007G054800--Sobic005G162500 Sobic006G280000 Sobic006G280000 Sobic007G054800--Sobic006G280000 Sobic007G054800--Sobic002G256700 Sobic002G133300 Sobic002G133300 Sobic007G054800--Sobic002G133300 Sobic007G054800--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic007G054800--Sobic004G131300 Sobic003G337300 Sobic003G337300 Sobic003G104000--Sobic003G337300 Sobic003G104000--Sobic002G256700 Sobic006G126100 Sobic006G126100 Sobic003G104000--Sobic006G126100 Sobic003G104000--Sobic001G251100 Sobic003G104000--Sobic002G142900 Sobic002G295500 Sobic002G295500 Sobic003G104000--Sobic002G295500 Sobic004G277200 Sobic004G277200 Sobic003G104000--Sobic004G277200 Sobic003G104000--Sobic004G131300 Sobic006G261400 Sobic006G261400 Sobic003G104000--Sobic006G261400 Sobic002G256700--Sobic003G104000 Sobic001G493700 Sobic001G493700 Sobic002G256700--Sobic001G493700 Sobic002G256700--Sobic007G054800 Sobic002G256700--Sobic001G251100 Sobic002G256700--Sobic002G142900 Sobic002G256700--Sobic004G131300 Sobic002G256700--Sobic006G280000 Sobic002G256700--Sobic002G133300 Sobic001G117200 Sobic001G117200 Sobic002G256700--Sobic001G117200 Sobic010G020400 Sobic010G020400 Sobic002G020700--Sobic010G020400 Sobic008G085700 Sobic008G085700 Sobic002G020700--Sobic008G085700 Sobic008G055900 Sobic008G055900 Sobic002G020700--Sobic008G055900 Sobic002G020700--Sobic001G333100 Sobic010G223300 Sobic010G223300 Sobic002G020700--Sobic010G223300 Sobic001G449900 Sobic001G449900 Sobic002G020700--Sobic001G449900 Sobic004G039600 Sobic004G039600 Sobic002G020700--Sobic004G039600 Sobic008G082500 Sobic008G082500 Sobic002G020700--Sobic008G082500 Sobic002G020700--Sobic007G054800 Sobic001G251100--Sobic003G104000 Sobic001G251100--Sobic002G256700 Sobic001G251100--Sobic004G131300 Sobic001G251100--Sobic002G133300 Sobic001G251100--Sobic003G293300 Sobic001G251100--Sobic007G054800 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic003G379200 Sobic003G379200 Sobic001G251100--Sobic003G379200 Sobic006G188500 Sobic006G188500 Sobic003G046300--Sobic006G188500 Sobic008G103300 Sobic008G103300 Sobic003G046300--Sobic008G103300 Sobic003G046300--Sobic002G142900 Sobic002G371700 Sobic002G371700 Sobic003G046300--Sobic002G371700 Sobic003G132000 Sobic003G132000 Sobic003G046300--Sobic003G132000 Sobic007G000200 Sobic007G000200 Sobic003G046300--Sobic007G000200 Sobic002G263600 Sobic002G263600 Sobic003G046300--Sobic002G263600 Sobic001G455800 Sobic001G455800 Sobic003G046300--Sobic001G455800 Sobic001G487100 Sobic001G487100 Sobic003G046300--Sobic001G487100 Sobic003G221400--Sobic007G054800 Sobic003G221400--Sobic005G162500 Sobic003G221400--Sobic001G493700 Sobic003G221400--Sobic001G110600 Sobic003G221400--Sobic001G004400 Sobic003G221400--Sobic001G333100 Sobic002G179400 Sobic002G179400 Sobic003G221400--Sobic002G179400 Sobic001G192000 Sobic001G192000 Sobic003G221400--Sobic001G192000 Sobic008G085300 Sobic008G085300 Sobic003G221400--Sobic008G085300 Sobic002G142900--Sobic004G131300 Sobic001G263600 Sobic001G263600 Sobic002G142900--Sobic001G263600 Sobic002G142900--Sobic002G133300 Sobic003G195000 Sobic003G195000 Sobic002G142900--Sobic003G195000 Sobic002G142900--Sobic007G054800 Sobic002G142900--Sobic005G162500 Sobic002G142900--Sobic003G104000 Sobic002G142900--Sobic002G256700 Sobic002G335600 Sobic002G335600 Sobic002G142900--Sobic002G335600
Octagon: transcription factors


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