Gene annotation
Transcriptome id Sobic.007G079300.1
Synonym Sb07g006370
Functional annotation proteasome/cyclosome repeat containing protein, expressed
UniProt C5YIY1
Pfam PF13646 PF01851
Panther DB PTHR10943 PTHR10943:SF3
NCBI CDD -
KEGG Orthology K03032; PSMD1, 26S proteasome regulatory subunit N2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G32730 : 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit
RAP-DB (Rice) LOC_Os08g12820.1 : proteasome/cyclosome repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a029898 , Zm00025a002098 , Zm00025a035603 , Zm00025a009855 , Zm00025a054912 , Zm00025a056982
Brachypodium KQJ84467 , KQJ95640
Barley HORVU1Hr1G081810.9 , HORVU1Hr1G081810.10 , HORVU1Hr1G081810.8 , HORVU1Hr1G081810.7 , HORVU1Hr1G081810.6 , HORVU1Hr1G081810.4 , HORVU1Hr1G081810.3 , HORVU1Hr1G081810.2 , HORVU1Hr1G081810.1 , HORVU1Hr1G081810.5
Wheat TraesCS2B02G450800 , TraesCS2B02G450800 , TraesCS2B02G450800 , TraesCS1A02G348400 , TraesCS1B02G363000 , TraesCS2A02G430100 , TraesCS2A02G430100 , TraesCS2A02G430100 , TraesCS2A02G430100 , TraesCS2A02G430100 , TraesCS2D02G427700 , TraesCS2D02G427700 , TraesCS2D02G427700 , TraesCS2D02G427700 , TraesCS1D02G351400 , TraesCS1D02G351400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
2 Sobic.004G348900 expressed protein -
3 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
4 Sobic.001G234200 actin, putative, expressed K16615: actin-related protein 7, plant
5 Sobic.001G206900 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
6 Sobic.004G082900 26S protease regulatory subunit, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4
7 Sobic.001G444300 expressed protein -
8 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
9 Sobic.001G014800 tetratricopeptide repeat containing protein, putative, expressed -
10 Sobic.010G020400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
11 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
12 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
13 Sobic.001G085100 expressed protein -
14 Sobic.002G263600 expressed protein -
15 Sobic.009G149500 coiled-coil domain-containing protein 47 precursor, putative, expressed -
16 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
17 Sobic.003G218300 C-5 cytosine-specific DNA methylase, putative, expressed K15336: TRDMT1, tRNA (cytosine38-C5)-methyltransferase
18 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
19 Sobic.004G181900 expressed protein -
20 Sobic.005G111900 uncharacterized protein family UPF0016 domain containing protein, expressed -


Gene co-expression network
sample Sobic007G079300 Sobic007G079300 Sobic002G071000 Sobic002G071000 Sobic007G079300--Sobic002G071000 Sobic004G348900 Sobic004G348900 Sobic007G079300--Sobic004G348900 Sobic001G283200 Sobic001G283200 Sobic007G079300--Sobic001G283200 Sobic001G234200 Sobic001G234200 Sobic007G079300--Sobic001G234200 Sobic001G206900 Sobic001G206900 Sobic007G079300--Sobic001G206900 Sobic004G082900 Sobic004G082900 Sobic007G079300--Sobic004G082900 Sobic001G444300 Sobic001G444300 Sobic007G079300--Sobic001G444300 Sobic002G020700 Sobic002G020700 Sobic007G079300--Sobic002G020700 Sobic001G014800 Sobic001G014800 Sobic007G079300--Sobic001G014800 Sobic002G071000--Sobic007G079300 Sobic002G071000--Sobic001G234200 Sobic002G071000--Sobic004G348900 Sobic006G010000 Sobic006G010000 Sobic002G071000--Sobic006G010000 Sobic009G249100 Sobic009G249100 Sobic002G071000--Sobic009G249100 Sobic003G293300 Sobic003G293300 Sobic002G071000--Sobic003G293300 Sobic003G117300 Sobic003G117300 Sobic002G071000--Sobic003G117300 Sobic002G071000--Sobic004G082900 Sobic006G049700 Sobic006G049700 Sobic002G071000--Sobic006G049700 Sobic004G348900--Sobic001G283200 Sobic003G077900 Sobic003G077900 Sobic004G348900--Sobic003G077900 Sobic004G181900 Sobic004G181900 Sobic004G348900--Sobic004G181900 Sobic001G404100 Sobic001G404100 Sobic004G348900--Sobic001G404100 Sobic004G348900--Sobic001G206900 Sobic001G085100 Sobic001G085100 Sobic004G348900--Sobic001G085100 Sobic002G400000 Sobic002G400000 Sobic004G348900--Sobic002G400000 Sobic004G348900--Sobic001G444300 Sobic001G323000 Sobic001G323000 Sobic004G348900--Sobic001G323000 Sobic001G458700 Sobic001G458700 Sobic001G283200--Sobic001G458700 Sobic003G261400 Sobic003G261400 Sobic001G283200--Sobic003G261400 Sobic006G252200 Sobic006G252200 Sobic001G283200--Sobic006G252200 Sobic001G033500 Sobic001G033500 Sobic001G283200--Sobic001G033500 Sobic001G283200--Sobic004G348900 Sobic001G283200--Sobic004G181900 Sobic003G349300 Sobic003G349300 Sobic001G283200--Sobic003G349300 Sobic007G176200 Sobic007G176200 Sobic001G283200--Sobic007G176200 Sobic001G283200--Sobic004G082900 Sobic001G234200--Sobic002G071000 Sobic001G234200--Sobic006G049700 Sobic001G234200--Sobic006G010000 Sobic001G234200--Sobic003G293300 Sobic001G234200--Sobic007G079300 Sobic001G114500 Sobic001G114500 Sobic001G234200--Sobic001G114500 Sobic001G459100 Sobic001G459100 Sobic001G234200--Sobic001G459100 Sobic002G083900 Sobic002G083900 Sobic001G234200--Sobic002G083900 Sobic003G264200 Sobic003G264200 Sobic001G234200--Sobic003G264200 Sobic001G206900--Sobic001G323000 Sobic003G312200 Sobic003G312200 Sobic001G206900--Sobic003G312200 Sobic004G010900 Sobic004G010900 Sobic001G206900--Sobic004G010900 Sobic001G206900--Sobic004G181900 Sobic001G206900--Sobic001G085100 Sobic009G149500 Sobic009G149500 Sobic001G206900--Sobic009G149500 Sobic006G148200 Sobic006G148200 Sobic001G206900--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G206900--Sobic007G167900 Sobic001G206900--Sobic003G349300 Sobic004G082900--Sobic006G252200 Sobic004G082900--Sobic001G283200 Sobic004G082900--Sobic001G458700 Sobic004G082900--Sobic004G010900 Sobic004G082900--Sobic007G176200 Sobic005G105500 Sobic005G105500 Sobic004G082900--Sobic005G105500 Sobic001G145500 Sobic001G145500 Sobic004G082900--Sobic001G145500 Sobic004G082900--Sobic009G149500 Sobic004G082900--Sobic001G444300 Sobic001G444300--Sobic001G145500 Sobic006G109700 Sobic006G109700 Sobic001G444300--Sobic006G109700 Sobic002G423800 Sobic002G423800 Sobic001G444300--Sobic002G423800 Sobic006G211800 Sobic006G211800 Sobic001G444300--Sobic006G211800 Sobic001G444300--Sobic007G176200 Sobic001G444300--Sobic006G252200 Sobic002G428200 Sobic002G428200 Sobic001G444300--Sobic002G428200 Sobic003G104700 Sobic003G104700 Sobic001G444300--Sobic003G104700 Sobic001G444300--Sobic004G348900 Sobic010G020400 Sobic010G020400 Sobic002G020700--Sobic010G020400 Sobic008G085700 Sobic008G085700 Sobic002G020700--Sobic008G085700 Sobic008G055900 Sobic008G055900 Sobic002G020700--Sobic008G055900 Sobic001G333100 Sobic001G333100 Sobic002G020700--Sobic001G333100 Sobic010G223300 Sobic010G223300 Sobic002G020700--Sobic010G223300 Sobic001G449900 Sobic001G449900 Sobic002G020700--Sobic001G449900 Sobic004G039600 Sobic004G039600 Sobic002G020700--Sobic004G039600 Sobic008G082500 Sobic008G082500 Sobic002G020700--Sobic008G082500 Sobic007G054800 Sobic007G054800 Sobic002G020700--Sobic007G054800 Sobic001G014800--Sobic010G020400 Sobic009G084000 Sobic009G084000 Sobic001G014800--Sobic009G084000 Sobic008G033500 Sobic008G033500 Sobic001G014800--Sobic008G033500 Sobic001G014800--Sobic001G333100 Sobic009G192000 Sobic009G192000 Sobic001G014800--Sobic009G192000 Sobic002G047700 Sobic002G047700 Sobic001G014800--Sobic002G047700 Sobic006G180000 Sobic006G180000 Sobic001G014800--Sobic006G180000 Sobic006G201800 Sobic006G201800 Sobic001G014800--Sobic006G201800 Sobic002G263600 Sobic002G263600 Sobic001G014800--Sobic002G263600
Octagon: transcription factors


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