Gene annotation
Transcriptome id Sobic.001G417900.1,Sobic.001G417900.2
Synonym Sb01g039330
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5WPD6
Pfam PF00076
Panther DB PTHR19965 PTHR19965:SF29
NCBI CDD KOG0533; RRM motif-containing protein
KEGG Orthology K12881; THOC4, THO complex subunit 4
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G59950 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os03g17010.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a001876 , Zm00025a052742
Brachypodium KQK22313
Barley HORVU4Hr1G059090.10 , HORVU4Hr1G059090.3 , HORVU4Hr1G059090.2 , HORVU4Hr1G059090.7 , HORVU4Hr1G059090.6 , HORVU4Hr1G059090.5 , HORVU4Hr1G059090.4 , HORVU4Hr1G059090.9 , HORVU4Hr1G059090.8
Wheat -
Populus -


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cDNA sequences
Sobic.001G417900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
2 Sobic.002G431600 protein kinase APK1B, chloroplast precursor, putative, expressed -
3 Sobic.003G122500 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
4 Sobic.010G277100 regulator of ribonuclease, putative, expressed -
5 Sobic.002G071000 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
6 Sobic.003G299000 protein of unknown function DUF1421 domain containing protein, expressed -
7 Sobic.001G049500 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
8 Sobic.001G427500 B4-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
9 Sobic.001G414500 ankyrin repeat-containing protein, putative, expressed -
10 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
11 Sobic.008G144800 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
12 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
13 Sobic.006G054500 membrane-anchored ubiquitin-fold protein, putative, expressed -
14 Sobic.008G118900 OsAPRL6 adenosine 5\'-phosphosulfate reductase-like OsAPRL6, expressed -
15 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
16 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
17 Sobic.003G117300 LSM domain containing protein, expressed K12623: U6 snRNA-associated Sm-like protein LSm4
18 Sobic.004G067100 homeobox protein knotted-1, putative, expressed -
19 Sobic.002G137300 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
20 Sobic.001G339500 expressed protein -


Gene co-expression network
sample Sobic001G417900 Sobic001G417900 Sobic003G077900 Sobic003G077900 Sobic001G417900--Sobic003G077900 Sobic002G431600 Sobic002G431600 Sobic001G417900--Sobic002G431600 Sobic003G122500 Sobic003G122500 Sobic001G417900--Sobic003G122500 Sobic010G277100 Sobic010G277100 Sobic001G417900--Sobic010G277100 Sobic002G071000 Sobic002G071000 Sobic001G417900--Sobic002G071000 Sobic003G299000 Sobic003G299000 Sobic001G417900--Sobic003G299000 Sobic001G049500 Sobic001G049500 Sobic001G417900--Sobic001G049500 Sobic001G427500 Sobic001G427500 Sobic001G417900--Sobic001G427500 Sobic001G414500 Sobic001G414500 Sobic001G417900--Sobic001G414500 Sobic002G400000 Sobic002G400000 Sobic003G077900--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic003G077900--Sobic007G168600 Sobic003G217400 Sobic003G217400 Sobic003G077900--Sobic003G217400 Sobic010G188100 Sobic010G188100 Sobic003G077900--Sobic010G188100 Sobic004G060600 Sobic004G060600 Sobic003G077900--Sobic004G060600 Sobic001G220400 Sobic001G220400 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic009G219900 Sobic009G219900 Sobic003G077900--Sobic009G219900 Sobic004G130900 Sobic004G130900 Sobic003G077900--Sobic004G130900 Sobic002G431600--Sobic001G417900 Sobic002G431600--Sobic009G219900 Sobic004G301900 Sobic004G301900 Sobic002G431600--Sobic004G301900 Sobic010G130000 Sobic010G130000 Sobic002G431600--Sobic010G130000 Sobic006G033200 Sobic006G033200 Sobic002G431600--Sobic006G033200 Sobic002G431600--Sobic003G077900 Sobic006G119800 Sobic006G119800 Sobic002G431600--Sobic006G119800 Sobic002G431600--Sobic004G060600 Sobic006G054500 Sobic006G054500 Sobic002G431600--Sobic006G054500 Sobic007G084100 Sobic007G084100 Sobic003G122500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic003G122500--Sobic005G160400 Sobic003G123000 Sobic003G123000 Sobic003G122500--Sobic003G123000 Sobic001G241100 Sobic001G241100 Sobic003G122500--Sobic001G241100 Sobic001G119900 Sobic001G119900 Sobic003G122500--Sobic001G119900 Sobic010G171100 Sobic010G171100 Sobic003G122500--Sobic010G171100 Sobic002G047700 Sobic002G047700 Sobic003G122500--Sobic002G047700 Sobic006G199200 Sobic006G199200 Sobic003G122500--Sobic006G199200 Sobic004G257100 Sobic004G257100 Sobic003G122500--Sobic004G257100 Sobic001G364600 Sobic001G364600 Sobic010G277100--Sobic001G364600 Sobic005G168600 Sobic005G168600 Sobic010G277100--Sobic005G168600 Sobic010G277100--Sobic003G077900 Sobic010G277100--Sobic001G417900 Sobic001G053000 Sobic001G053000 Sobic010G277100--Sobic001G053000 Sobic002G111200 Sobic002G111200 Sobic010G277100--Sobic002G111200 Sobic010G049100 Sobic010G049100 Sobic010G277100--Sobic010G049100 Sobic001G014800 Sobic001G014800 Sobic010G277100--Sobic001G014800 Sobic007G188300 Sobic007G188300 Sobic010G277100--Sobic007G188300 Sobic007G079300 Sobic007G079300 Sobic002G071000--Sobic007G079300 Sobic001G234200 Sobic001G234200 Sobic002G071000--Sobic001G234200 Sobic002G071000--Sobic004G348900 Sobic006G010000 Sobic006G010000 Sobic002G071000--Sobic006G010000 Sobic009G249100 Sobic009G249100 Sobic002G071000--Sobic009G249100 Sobic003G293300 Sobic003G293300 Sobic002G071000--Sobic003G293300 Sobic003G117300 Sobic003G117300 Sobic002G071000--Sobic003G117300 Sobic004G082900 Sobic004G082900 Sobic002G071000--Sobic004G082900 Sobic006G049700 Sobic006G049700 Sobic002G071000--Sobic006G049700 Sobic003G299000--Sobic003G077900 Sobic003G299000--Sobic004G348900 Sobic001G206900 Sobic001G206900 Sobic003G299000--Sobic001G206900 Sobic003G436300 Sobic003G436300 Sobic003G299000--Sobic003G436300 Sobic004G227300 Sobic004G227300 Sobic003G299000--Sobic004G227300 Sobic003G299000--Sobic001G417900 Sobic002G418700 Sobic002G418700 Sobic003G299000--Sobic002G418700 Sobic003G299000--Sobic003G217400 Sobic002G242200 Sobic002G242200 Sobic003G299000--Sobic002G242200 Sobic010G013200 Sobic010G013200 Sobic001G049500--Sobic010G013200 Sobic008G081300 Sobic008G081300 Sobic001G049500--Sobic008G081300 Sobic009G201300 Sobic009G201300 Sobic001G049500--Sobic009G201300 Sobic002G311100 Sobic002G311100 Sobic001G049500--Sobic002G311100 Sobic001G251100 Sobic001G251100 Sobic001G049500--Sobic001G251100 Sobic003G340600 Sobic003G340600 Sobic001G049500--Sobic003G340600 Sobic001G049500--Sobic001G241100 Sobic006G219600 Sobic006G219600 Sobic001G049500--Sobic006G219600 Sobic001G396000 Sobic001G396000 Sobic001G049500--Sobic001G396000 Sobic002G339500 Sobic002G339500 Sobic001G427500--Sobic002G339500 Sobic002G193400 Sobic002G193400 Sobic001G427500--Sobic002G193400 Sobic001G427500--Sobic004G227300 Sobic006G004600 Sobic006G004600 Sobic001G427500--Sobic006G004600 Sobic007G062500 Sobic007G062500 Sobic001G427500--Sobic007G062500 Sobic001G427500--Sobic001G417900 Sobic009G017400 Sobic009G017400 Sobic001G427500--Sobic009G017400 Sobic001G261597 Sobic001G261597 Sobic001G427500--Sobic001G261597 Sobic001G022600 Sobic001G022600 Sobic001G427500--Sobic001G022600 Sobic008G089900 Sobic008G089900 Sobic001G414500--Sobic008G089900 Sobic001G414500--Sobic009G219900 Sobic006G261300 Sobic006G261300 Sobic001G414500--Sobic006G261300 Sobic006G092400 Sobic006G092400 Sobic001G414500--Sobic006G092400 Sobic002G217400 Sobic002G217400 Sobic001G414500--Sobic002G217400 Sobic001G414500--Sobic003G077900 Sobic002G290400 Sobic002G290400 Sobic001G414500--Sobic002G290400 Sobic006G090000 Sobic006G090000 Sobic001G414500--Sobic006G090000 Sobic001G503300 Sobic001G503300 Sobic001G414500--Sobic001G503300
Octagon: transcription factors


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