Gene annotation
Transcriptome id Sobic.002G137300.1
Synonym Sb02g012420
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
UniProt C5X6K3
Pfam PF00106
Panther DB PTHR24320 PTHR24320:SF93
NCBI CDD KOG1208; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT4G11410 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os09g39670.1 : oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
MaizeGDB (Corn) Zm00025a046055
Brachypodium KQJ91626
Barley HORVU4Hr1G000100.22
Wheat TraesCS4D02G002700 , TraesCS4D02G002700 , TraesCS4A02G311400
Populus -


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cDNA sequences
Sobic.002G137300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G029200 phosphoesterase family protein, putative, expressed K01114: phospholipase C
2 Sobic.010G035500 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed K13628: iron-sulfur cluster assembly protein
3 Sobic.003G103200 pex14, putative, expressed K13343: peroxin-14
4 Sobic.009G141400 transcriptional regulator, putative, expressed -
5 Sobic.003G306700 acetamidase, putative, expressed K01455: formamidase
6 Sobic.008G081300 protein kinase, putative, expressed -
7 Sobic.006G201100 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
8 Sobic.006G269000 protein kinase, putative, expressed -
9 Sobic.004G163200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
10 Sobic.002G001000 transmembrane amino acid transporter protein, putative, expressed -
11 Sobic.001G417900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
12 Sobic.010G030300 serine threonine kinase, putative, expressed -
13 Sobic.008G144800 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
14 Sobic.002G354600 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
15 Sobic.004G210900 auxin efflux carrier component, putative, expressed -
16 Sobic.009G213800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
17 Sobic.006G083800 expressed protein -
18 Sobic.004G300000 OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed K03798: ftsH, cell division protease FtsH
19 Sobic.004G262700 - -
20 Sobic.008G193300 sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@"OsSUT2(Ortholog in rice:Eom et al., 2011)"(PubMedID : 31659914)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4


Gene co-expression network
sample Sobic002G137300 Sobic002G137300 Sobic001G029200 Sobic001G029200 Sobic002G137300--Sobic001G029200 Sobic010G035500 Sobic010G035500 Sobic002G137300--Sobic010G035500 Sobic003G103200 Sobic003G103200 Sobic002G137300--Sobic003G103200 Sobic009G141400 Sobic009G141400 Sobic002G137300--Sobic009G141400 Sobic003G306700 Sobic003G306700 Sobic002G137300--Sobic003G306700 Sobic008G081300 Sobic008G081300 Sobic002G137300--Sobic008G081300 Sobic006G201100 Sobic006G201100 Sobic002G137300--Sobic006G201100 Sobic006G269000 Sobic006G269000 Sobic002G137300--Sobic006G269000 Sobic004G163200 Sobic004G163200 Sobic002G137300--Sobic004G163200 Sobic001G029200--Sobic010G035500 Sobic004G300000 Sobic004G300000 Sobic001G029200--Sobic004G300000 Sobic009G019100 Sobic009G019100 Sobic001G029200--Sobic009G019100 Sobic008G081900 Sobic008G081900 Sobic001G029200--Sobic008G081900 Sobic009G213800 Sobic009G213800 Sobic001G029200--Sobic009G213800 Sobic007G227700 Sobic007G227700 Sobic001G029200--Sobic007G227700 Sobic002G193100 Sobic002G193100 Sobic001G029200--Sobic002G193100 Sobic004G026500 Sobic004G026500 Sobic001G029200--Sobic004G026500 Sobic002G339300 Sobic002G339300 Sobic001G029200--Sobic002G339300 Sobic010G035500--Sobic004G300000 Sobic010G035500--Sobic001G029200 Sobic006G214700 Sobic006G214700 Sobic010G035500--Sobic006G214700 Sobic002G025700 Sobic002G025700 Sobic010G035500--Sobic002G025700 Sobic010G035500--Sobic006G201100 Sobic010G035500--Sobic009G141400 Sobic010G035500--Sobic009G019100 Sobic010G035500--Sobic008G081900 Sobic006G193200 Sobic006G193200 Sobic010G035500--Sobic006G193200 Sobic009G190800 Sobic009G190800 Sobic003G103200--Sobic009G190800 Sobic003G103200--Sobic002G137300 Sobic006G024500 Sobic006G024500 Sobic003G103200--Sobic006G024500 Sobic003G103200--Sobic008G081300 Sobic005G044400 Sobic005G044400 Sobic003G103200--Sobic005G044400 Sobic008G193300 Sobic008G193300 Sobic003G103200--Sobic008G193300 Sobic003G103200--Sobic009G141400 Sobic002G181300 Sobic002G181300 Sobic003G103200--Sobic002G181300 Sobic008G144800 Sobic008G144800 Sobic003G103200--Sobic008G144800 Sobic009G141400--Sobic006G214700 Sobic006G110900 Sobic006G110900 Sobic009G141400--Sobic006G110900 Sobic006G155500 Sobic006G155500 Sobic009G141400--Sobic006G155500 Sobic009G141400--Sobic010G035500 Sobic010G269400 Sobic010G269400 Sobic009G141400--Sobic010G269400 Sobic004G324100 Sobic004G324100 Sobic009G141400--Sobic004G324100 Sobic008G063200 Sobic008G063200 Sobic009G141400--Sobic008G063200 Sobic003G253300 Sobic003G253300 Sobic009G141400--Sobic003G253300 Sobic001G286600 Sobic001G286600 Sobic009G141400--Sobic001G286600 Sobic003G306700--Sobic004G300000 Sobic003G306700--Sobic006G201100 Sobic003G306700--Sobic010G035500 Sobic003G306700--Sobic006G214700 Sobic009G079950 Sobic009G079950 Sobic003G306700--Sobic009G079950 Sobic003G306700--Sobic002G025700 Sobic002G331800 Sobic002G331800 Sobic003G306700--Sobic002G331800 Sobic003G306700--Sobic006G110900 Sobic004G164200 Sobic004G164200 Sobic003G306700--Sobic004G164200 Sobic010G013200 Sobic010G013200 Sobic008G081300--Sobic010G013200 Sobic001G049500 Sobic001G049500 Sobic008G081300--Sobic001G049500 Sobic006G083800 Sobic006G083800 Sobic008G081300--Sobic006G083800 Sobic002G001000 Sobic002G001000 Sobic008G081300--Sobic002G001000 Sobic008G172300 Sobic008G172300 Sobic008G081300--Sobic008G172300 Sobic001G268200 Sobic001G268200 Sobic008G081300--Sobic001G268200 Sobic001G396000 Sobic001G396000 Sobic008G081300--Sobic001G396000 Sobic001G402500 Sobic001G402500 Sobic008G081300--Sobic001G402500 Sobic008G081300--Sobic004G026500 Sobic006G201100--Sobic010G035500 Sobic006G201100--Sobic006G214700 Sobic002G046900 Sobic002G046900 Sobic006G201100--Sobic002G046900 Sobic010G207500 Sobic010G207500 Sobic006G201100--Sobic010G207500 Sobic006G201100--Sobic004G300000 Sobic006G201100--Sobic006G110900 Sobic006G201100--Sobic003G306700 Sobic006G201100--Sobic004G164200 Sobic006G201100--Sobic009G141400 Sobic006G269000--Sobic002G137300 Sobic006G004600 Sobic006G004600 Sobic006G269000--Sobic006G004600 Sobic004G214100 Sobic004G214100 Sobic006G269000--Sobic004G214100 Sobic001G072800 Sobic001G072800 Sobic006G269000--Sobic001G072800 Sobic003G261900 Sobic003G261900 Sobic006G269000--Sobic003G261900 Sobic007G168200 Sobic007G168200 Sobic006G269000--Sobic007G168200 Sobic002G242200 Sobic002G242200 Sobic006G269000--Sobic002G242200 Sobic006G269000--Sobic009G190800 Sobic001G417900 Sobic001G417900 Sobic006G269000--Sobic001G417900 Sobic004G163200--Sobic009G141400 Sobic004G163200--Sobic006G201100 Sobic004G224500 Sobic004G224500 Sobic004G163200--Sobic004G224500 Sobic004G163200--Sobic002G137300 Sobic004G163200--Sobic010G035500 Sobic010G030300 Sobic010G030300 Sobic004G163200--Sobic010G030300 Sobic004G163200--Sobic010G207500 Sobic002G142066 Sobic002G142066 Sobic004G163200--Sobic002G142066 Sobic004G163200--Sobic006G214700
Octagon: transcription factors


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