Gene annotation
Transcriptome id Sobic.004G163200.1
Synonym HSFA3, Sb04g021490, AT-HSFA3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
HSF-type DNA-binding domain containing protein, expressed
UniProt C5XTC9
Pfam PF00447
Panther DB PTHR10015 PTHR10015:SF164
NCBI CDD KOG0627; Heat shock transcription factor
KEGG Orthology K09419; heat shock transcription factor, other eukaryote
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G03720 : heat shock transcription factor A3
RAP-DB (Rice) LOC_Os02g32590.1 : HSF-type DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020519 , Zm00025a015267 , Zm00025a048930 , Zm00025a002613
Brachypodium PNT68735 , KQK23525 , KQJ99684 , KQK20612 , KQK20613 , KQK21569 , PNT77358 , KQK23526
Barley -
Wheat TraesCS2D02G211400 , TraesCS4B02G278100 , TraesCS2A02G089300 , TraesCS2B02G232000 , TraesCS2B02G232000 , TraesCS4D02G276500 , TraesCS2A02G204500 , TraesCS2A02G204500 , TraesCS2D02G087400 , TraesCS2A02G146600 , TraesCS2D02G211400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G141400 transcriptional regulator, putative, expressed -
2 Sobic.006G201100 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
3 Sobic.004G224500 OsClp3 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
4 Sobic.002G137300 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed -
5 Sobic.010G035500 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed K13628: iron-sulfur cluster assembly protein
6 Sobic.010G030300 serine threonine kinase, putative, expressed -
7 Sobic.010G207500 homeobox protein knotted-1, putative, expressed -
8 Sobic.002G142066 - K18045: SIW14, tyrosine-protein phosphatase SIW14
9 Sobic.006G214700 APO, putative, expressed -
10 Sobic.003G359900 C2 domain containing protein, expressed -
11 Sobic.003G356100 CRR2, putative, expressed -
12 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
13 Sobic.006G193200 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
14 Sobic.001G314900 homeobox domain containing protein, expressed -
15 Sobic.001G410000 P-protein, putative, expressed K05359: ADT, arogenate/prephenate dehydratase
16 Sobic.010G177800 RALFL28 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
17 Sobic.003G103200 pex14, putative, expressed K13343: peroxin-14
18 Sobic.010G231100 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
19 Sobic.004G324100 diacylglycerol kinase, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
20 Sobic.004G300000 OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed K03798: ftsH, cell division protease FtsH


Gene co-expression network
sample Sobic004G163200 Sobic004G163200 Sobic009G141400 Sobic009G141400 Sobic004G163200--Sobic009G141400 Sobic006G201100 Sobic006G201100 Sobic004G163200--Sobic006G201100 Sobic004G224500 Sobic004G224500 Sobic004G163200--Sobic004G224500 Sobic002G137300 Sobic002G137300 Sobic004G163200--Sobic002G137300 Sobic010G035500 Sobic010G035500 Sobic004G163200--Sobic010G035500 Sobic010G030300 Sobic010G030300 Sobic004G163200--Sobic010G030300 Sobic010G207500 Sobic010G207500 Sobic004G163200--Sobic010G207500 Sobic002G142066 Sobic002G142066 Sobic004G163200--Sobic002G142066 Sobic006G214700 Sobic006G214700 Sobic004G163200--Sobic006G214700 Sobic009G141400--Sobic006G214700 Sobic006G110900 Sobic006G110900 Sobic009G141400--Sobic006G110900 Sobic006G155500 Sobic006G155500 Sobic009G141400--Sobic006G155500 Sobic009G141400--Sobic010G035500 Sobic010G269400 Sobic010G269400 Sobic009G141400--Sobic010G269400 Sobic004G324100 Sobic004G324100 Sobic009G141400--Sobic004G324100 Sobic008G063200 Sobic008G063200 Sobic009G141400--Sobic008G063200 Sobic003G253300 Sobic003G253300 Sobic009G141400--Sobic003G253300 Sobic001G286600 Sobic001G286600 Sobic009G141400--Sobic001G286600 Sobic006G201100--Sobic010G035500 Sobic006G201100--Sobic006G214700 Sobic002G046900 Sobic002G046900 Sobic006G201100--Sobic002G046900 Sobic006G201100--Sobic010G207500 Sobic004G300000 Sobic004G300000 Sobic006G201100--Sobic004G300000 Sobic006G201100--Sobic006G110900 Sobic003G306700 Sobic003G306700 Sobic006G201100--Sobic003G306700 Sobic004G164200 Sobic004G164200 Sobic006G201100--Sobic004G164200 Sobic006G201100--Sobic009G141400 Sobic004G224500--Sobic006G110900 Sobic004G224500--Sobic002G046900 Sobic005G021600 Sobic005G021600 Sobic004G224500--Sobic005G021600 Sobic004G224500--Sobic006G214700 Sobic001G525900 Sobic001G525900 Sobic004G224500--Sobic001G525900 Sobic004G224500--Sobic008G063200 Sobic003G179400 Sobic003G179400 Sobic004G224500--Sobic003G179400 Sobic001G006000 Sobic001G006000 Sobic004G224500--Sobic001G006000 Sobic001G314900 Sobic001G314900 Sobic004G224500--Sobic001G314900 Sobic001G029200 Sobic001G029200 Sobic002G137300--Sobic001G029200 Sobic002G137300--Sobic010G035500 Sobic003G103200 Sobic003G103200 Sobic002G137300--Sobic003G103200 Sobic002G137300--Sobic009G141400 Sobic002G137300--Sobic003G306700 Sobic008G081300 Sobic008G081300 Sobic002G137300--Sobic008G081300 Sobic002G137300--Sobic006G201100 Sobic006G269000 Sobic006G269000 Sobic002G137300--Sobic006G269000 Sobic002G137300--Sobic004G163200 Sobic010G035500--Sobic004G300000 Sobic010G035500--Sobic001G029200 Sobic010G035500--Sobic006G214700 Sobic002G025700 Sobic002G025700 Sobic010G035500--Sobic002G025700 Sobic010G035500--Sobic006G201100 Sobic010G035500--Sobic009G141400 Sobic009G019100 Sobic009G019100 Sobic010G035500--Sobic009G019100 Sobic008G081900 Sobic008G081900 Sobic010G035500--Sobic008G081900 Sobic006G193200 Sobic006G193200 Sobic010G035500--Sobic006G193200 Sobic010G231100 Sobic010G231100 Sobic010G030300--Sobic010G231100 Sobic010G030300--Sobic009G141400 Sobic004G210900 Sobic004G210900 Sobic010G030300--Sobic004G210900 Sobic010G030300--Sobic010G207500 Sobic010G030300--Sobic004G300000 Sobic010G030300--Sobic010G035500 Sobic009G079950 Sobic009G079950 Sobic010G030300--Sobic009G079950 Sobic010G030300--Sobic003G179400 Sobic010G030300--Sobic006G214700 Sobic010G207500--Sobic002G025700 Sobic010G207500--Sobic006G201100 Sobic010G207500--Sobic004G300000 Sobic002G362100 Sobic002G362100 Sobic010G207500--Sobic002G362100 Sobic010G207500--Sobic002G046900 Sobic010G207500--Sobic010G035500 Sobic010G207500--Sobic004G164200 Sobic010G207500--Sobic009G141400 Sobic001G351400 Sobic001G351400 Sobic010G207500--Sobic001G351400 Sobic002G404200 Sobic002G404200 Sobic002G142066--Sobic002G404200 Sobic002G142066--Sobic004G224500 Sobic002G142066--Sobic009G141400 Sobic002G142066--Sobic008G063200 Sobic002G142066--Sobic006G214700 Sobic002G142066--Sobic003G179400 Sobic002G142066--Sobic001G006000 Sobic003G208300 Sobic003G208300 Sobic002G142066--Sobic003G208300 Sobic008G193300 Sobic008G193300 Sobic002G142066--Sobic008G193300 Sobic006G214700--Sobic003G179400 Sobic001G450600 Sobic001G450600 Sobic006G214700--Sobic001G450600 Sobic002G331800 Sobic002G331800 Sobic006G214700--Sobic002G331800 Sobic005G028900 Sobic005G028900 Sobic006G214700--Sobic005G028900 Sobic006G214700--Sobic006G110900 Sobic004G333400 Sobic004G333400 Sobic006G214700--Sobic004G333400 Sobic006G214700--Sobic003G253300 Sobic006G214700--Sobic008G063200 Sobic010G076800 Sobic010G076800 Sobic006G214700--Sobic010G076800
Octagon: transcription factors


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