Gene annotation
Transcriptome id Sobic.002G142066.1
Synonym -
Functional annotation -
UniProt A0A1W0W3X5
Pfam PF03162
Panther DB PTHR31126 PTHR31126:SF15
NCBI CDD KOG1572; Predicted protein tyrosine phosphatase
KEGG Orthology K18045; SIW14, tyrosine-protein phosphatase SIW14
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G05000 : Phosphotyrosine protein phosphatases superfamily protein
RAP-DB (Rice) LOC_Os09g05020.2 : tyrosine phosphatase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a013438
Brachypodium -
Barley HORVU5Hr1G051160.8 , HORVU5Hr1G051160.9 , HORVU5Hr1G051160.6 , HORVU5Hr1G051160.7 , HORVU5Hr1G051160.4 , HORVU5Hr1G051160.5 , HORVU5Hr1G051160.2 , HORVU5Hr1G051160.3 , HORVU5Hr1G051160.1 , HORVU5Hr1G051160.10 , HORVU5Hr1G051160.11 , HORVU5Hr1G051160.12
Wheat TraesCS5A02G164900 , TraesCS5B02G163200 , TraesCS5D02G170400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G404200 F-box domain containing protein, expressed -
2 Sobic.004G224500 OsClp3 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
3 Sobic.009G141400 transcriptional regulator, putative, expressed -
4 Sobic.008G063200 expressed protein -
5 Sobic.006G214700 APO, putative, expressed -
6 Sobic.003G179400 NLI interacting factor(NIF) family protein(PubMedID : 26320239)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
7 Sobic.001G006000 PPR repeat domain containing protein, putative, expressed -
8 Sobic.003G208300 PPR repeat domain containing protein, putative, expressed -
9 Sobic.008G193300 sucrose transporters("PubMedID : 27986867,PubMedID : 23805151")@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@"OsSUT2(Ortholog in rice:Eom et al., 2011)"(PubMedID : 31659914)@sucrose transporter, putativ, expressed K15378: solute carrier family 45, member 1/2/4
10 Sobic.003G237000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed -
11 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
12 Sobic.010G080300 peptidase, putative, expressed K01436: amidohydrolase
13 Sobic.006G110900 acetyltransferase, GNAT family, putative, expressed -
14 Sobic.007G132500 F-box domain containing protein, expressed -
15 Sobic.002G163700 expressed protein -
16 Sobic.005G021600 expressed protein -
17 Sobic.010G076800 ferredoxin thioredoxin reductase catalytic beta chain family protein(PubMedID : 26465154)@ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed K17892: ferredoxin-thioredoxin reductase catalytic chain
18 Sobic.009G004800 - -
19 Sobic.009G079950 - -
20 Sobic.001G450600 uncharacterized protein sll0194, putative, expressed K03118: sec-independent protein translocase protein TatC


Gene co-expression network
sample Sobic002G142066 Sobic002G142066 Sobic002G404200 Sobic002G404200 Sobic002G142066--Sobic002G404200 Sobic004G224500 Sobic004G224500 Sobic002G142066--Sobic004G224500 Sobic009G141400 Sobic009G141400 Sobic002G142066--Sobic009G141400 Sobic008G063200 Sobic008G063200 Sobic002G142066--Sobic008G063200 Sobic006G214700 Sobic006G214700 Sobic002G142066--Sobic006G214700 Sobic003G179400 Sobic003G179400 Sobic002G142066--Sobic003G179400 Sobic001G006000 Sobic001G006000 Sobic002G142066--Sobic001G006000 Sobic003G208300 Sobic003G208300 Sobic002G142066--Sobic003G208300 Sobic008G193300 Sobic008G193300 Sobic002G142066--Sobic008G193300 Sobic001G300100 Sobic001G300100 Sobic002G404200--Sobic001G300100 Sobic002G404200--Sobic002G142066 Sobic010G100800 Sobic010G100800 Sobic002G404200--Sobic010G100800 Sobic007G029100 Sobic007G029100 Sobic002G404200--Sobic007G029100 Sobic002G404200--Sobic008G193300 Sobic010G086900 Sobic010G086900 Sobic002G404200--Sobic010G086900 Sobic001G341800 Sobic001G341800 Sobic002G404200--Sobic001G341800 Sobic001G279900 Sobic001G279900 Sobic002G404200--Sobic001G279900 Sobic009G004800 Sobic009G004800 Sobic002G404200--Sobic009G004800 Sobic006G110900 Sobic006G110900 Sobic004G224500--Sobic006G110900 Sobic002G046900 Sobic002G046900 Sobic004G224500--Sobic002G046900 Sobic005G021600 Sobic005G021600 Sobic004G224500--Sobic005G021600 Sobic004G224500--Sobic006G214700 Sobic001G525900 Sobic001G525900 Sobic004G224500--Sobic001G525900 Sobic004G224500--Sobic008G063200 Sobic004G224500--Sobic003G179400 Sobic004G224500--Sobic001G006000 Sobic001G314900 Sobic001G314900 Sobic004G224500--Sobic001G314900 Sobic009G141400--Sobic006G214700 Sobic009G141400--Sobic006G110900 Sobic006G155500 Sobic006G155500 Sobic009G141400--Sobic006G155500 Sobic010G035500 Sobic010G035500 Sobic009G141400--Sobic010G035500 Sobic010G269400 Sobic010G269400 Sobic009G141400--Sobic010G269400 Sobic004G324100 Sobic004G324100 Sobic009G141400--Sobic004G324100 Sobic009G141400--Sobic008G063200 Sobic003G253300 Sobic003G253300 Sobic009G141400--Sobic003G253300 Sobic001G286600 Sobic001G286600 Sobic009G141400--Sobic001G286600 Sobic001G450600 Sobic001G450600 Sobic008G063200--Sobic001G450600 Sobic008G063200--Sobic006G110900 Sobic008G063200--Sobic006G214700 Sobic008G063200--Sobic001G006000 Sobic002G102200 Sobic002G102200 Sobic008G063200--Sobic002G102200 Sobic008G063200--Sobic003G253300 Sobic010G076800 Sobic010G076800 Sobic008G063200--Sobic010G076800 Sobic004G333400 Sobic004G333400 Sobic008G063200--Sobic004G333400 Sobic003G342200 Sobic003G342200 Sobic008G063200--Sobic003G342200 Sobic006G214700--Sobic003G179400 Sobic006G214700--Sobic001G450600 Sobic002G331800 Sobic002G331800 Sobic006G214700--Sobic002G331800 Sobic005G028900 Sobic005G028900 Sobic006G214700--Sobic005G028900 Sobic006G214700--Sobic006G110900 Sobic006G214700--Sobic004G333400 Sobic006G214700--Sobic003G253300 Sobic006G214700--Sobic008G063200 Sobic006G214700--Sobic010G076800 Sobic003G179400--Sobic006G214700 Sobic010G231100 Sobic010G231100 Sobic003G179400--Sobic010G231100 Sobic003G179400--Sobic005G028900 Sobic003G179400--Sobic010G076800 Sobic003G179400--Sobic004G333400 Sobic003G179400--Sobic001G450600 Sobic003G179400--Sobic008G063200 Sobic003G179400--Sobic002G331800 Sobic003G179400--Sobic006G110900 Sobic001G006000--Sobic010G076800 Sobic009G028400 Sobic009G028400 Sobic001G006000--Sobic009G028400 Sobic004G253400 Sobic004G253400 Sobic001G006000--Sobic004G253400 Sobic001G006000--Sobic008G063200 Sobic007G076900 Sobic007G076900 Sobic001G006000--Sobic007G076900 Sobic004G179200 Sobic004G179200 Sobic001G006000--Sobic004G179200 Sobic001G339100 Sobic001G339100 Sobic001G006000--Sobic001G339100 Sobic001G006000--Sobic003G253300 Sobic003G245800 Sobic003G245800 Sobic001G006000--Sobic003G245800 Sobic002G386400 Sobic002G386400 Sobic003G208300--Sobic002G386400 Sobic007G132500 Sobic007G132500 Sobic003G208300--Sobic007G132500 Sobic002G038300 Sobic002G038300 Sobic003G208300--Sobic002G038300 Sobic002G163700 Sobic002G163700 Sobic003G208300--Sobic002G163700 Sobic003G208300--Sobic009G004800 Sobic006G197700 Sobic006G197700 Sobic003G208300--Sobic006G197700 Sobic001G161300 Sobic001G161300 Sobic003G208300--Sobic001G161300 Sobic003G208300--Sobic006G214700 Sobic003G330100 Sobic003G330100 Sobic003G208300--Sobic003G330100 Sobic008G193300--Sobic008G063200 Sobic010G080300 Sobic010G080300 Sobic008G193300--Sobic010G080300 Sobic008G193300--Sobic002G404200 Sobic004G265900 Sobic004G265900 Sobic008G193300--Sobic004G265900 Sobic008G193300--Sobic006G214700 Sobic008G193300--Sobic001G450600 Sobic009G079950 Sobic009G079950 Sobic008G193300--Sobic009G079950 Sobic008G193300--Sobic002G142066 Sobic004G144000 Sobic004G144000 Sobic008G193300--Sobic004G144000
Octagon: transcription factors


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