Gene annotation
Transcriptome id Sobic.010G207500.1
Synonym KNAT3, Sb10g025440
Functional annotation homeobox protein knotted-1, putative, expressed
UniProt A0A194YKK6
Pfam PF03789 PF03790 PF03791 PF05920
Panther DB PTHR11850 PTHR11850:SF127
NCBI CDD KOG0773; Transcription factor MEIS1 and related HOX domain proteins
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0005634nucleus GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT5G25220 : KNOTTED1-like homeobox gene 3
RAP-DB (Rice) LOC_Os02g08544.1 : homeobox protein knotted-1, putative, expressed
MaizeGDB (Corn) Zm00025a019271 , Zm00025a034748 , Zm00025a051364
Brachypodium KQK16806 , KQK16805
Barley HORVU7Hr1G114650.6 , HORVU7Hr1G114650.4 , HORVU7Hr1G114650.5 , HORVU7Hr1G114650.2 , HORVU7Hr1G114650.3 , HORVU7Hr1G114650.1 , HORVU6Hr1G028610.5 , HORVU6Hr1G028610.4 , HORVU6Hr1G028610.3 , HORVU6Hr1G028610.2 , HORVU6Hr1G028610.8
Wheat TraesCS7D02G501000 , TraesCS7D02G501000 , TraesCS6A02G145500 , TraesCS6A02G145500 , TraesCS6B02G173900 , TraesCS6D02G134800 , TraesCS6D02G134800 , TraesCS6B02G173900
Populus PNT32443 , PNT32441 , PNT32444


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cDNA sequences
Sobic.010G207500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G025700 lectin-like receptor kinase, putative, expressed -
2 Sobic.006G201100 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
3 Sobic.004G300000 OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed K03798: ftsH, cell division protease FtsH
4 Sobic.002G362100 expressed protein -
5 Sobic.002G046900 HNH endonuclease domain-containing protein, putative, expressed -
6 Sobic.010G035500 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed K13628: iron-sulfur cluster assembly protein
7 Sobic.004G164200 heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
8 Sobic.009G141400 transcriptional regulator, putative, expressed -
9 Sobic.001G351400 Metacaspase 1("PubMedID : 26759170,PubMedID : 24597475")@ICE-like protease p20 domain containing protein, putative, expressed -
10 Sobic.006G060601 - -
11 Sobic.005G175600 TKL_IRAK_DUF26-lc.24 - DUF26 kinases have homology to DUF26 containing loci, expressed -
12 Sobic.005G175500 TKL_IRAK_DUF26-lc.25 - DUF26 kinases have homology to DUF26 containing loci, expressed -
13 Sobic.009G034600 expressed protein -
14 Sobic.004G189900 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed K13418: somatic embryogenesis receptor kinase 1
15 Sobic.006G258700 Alternative oxidase family protein(PubMedID : 26465154)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
16 Sobic.006G214700 APO, putative, expressed -
17 Sobic.002G163700 expressed protein -
18 Sobic.009G213800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed -
19 Sobic.009G079950 - -
20 Sobic.010G189200 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic010G207500 Sobic010G207500 Sobic002G025700 Sobic002G025700 Sobic010G207500--Sobic002G025700 Sobic006G201100 Sobic006G201100 Sobic010G207500--Sobic006G201100 Sobic004G300000 Sobic004G300000 Sobic010G207500--Sobic004G300000 Sobic002G362100 Sobic002G362100 Sobic010G207500--Sobic002G362100 Sobic002G046900 Sobic002G046900 Sobic010G207500--Sobic002G046900 Sobic010G035500 Sobic010G035500 Sobic010G207500--Sobic010G035500 Sobic004G164200 Sobic004G164200 Sobic010G207500--Sobic004G164200 Sobic009G141400 Sobic009G141400 Sobic010G207500--Sobic009G141400 Sobic001G351400 Sobic001G351400 Sobic010G207500--Sobic001G351400 Sobic002G025700--Sobic004G300000 Sobic004G089200 Sobic004G089200 Sobic002G025700--Sobic004G089200 Sobic002G025700--Sobic010G035500 Sobic003G359500 Sobic003G359500 Sobic002G025700--Sobic003G359500 Sobic002G025700--Sobic010G207500 Sobic002G354600 Sobic002G354600 Sobic002G025700--Sobic002G354600 Sobic004G165900 Sobic004G165900 Sobic002G025700--Sobic004G165900 Sobic010G205700 Sobic010G205700 Sobic002G025700--Sobic010G205700 Sobic006G193200 Sobic006G193200 Sobic002G025700--Sobic006G193200 Sobic006G201100--Sobic010G035500 Sobic006G214700 Sobic006G214700 Sobic006G201100--Sobic006G214700 Sobic006G201100--Sobic002G046900 Sobic006G201100--Sobic010G207500 Sobic006G201100--Sobic004G300000 Sobic006G110900 Sobic006G110900 Sobic006G201100--Sobic006G110900 Sobic003G306700 Sobic003G306700 Sobic006G201100--Sobic003G306700 Sobic006G201100--Sobic004G164200 Sobic006G201100--Sobic009G141400 Sobic004G300000--Sobic010G035500 Sobic004G300000--Sobic002G025700 Sobic004G300000--Sobic006G193200 Sobic004G300000--Sobic006G214700 Sobic003G108900 Sobic003G108900 Sobic004G300000--Sobic003G108900 Sobic010G197000 Sobic010G197000 Sobic004G300000--Sobic010G197000 Sobic004G300000--Sobic004G165900 Sobic003G014300 Sobic003G014300 Sobic004G300000--Sobic003G014300 Sobic004G300000--Sobic002G354600 Sobic002G362100--Sobic010G207500 Sobic002G362100--Sobic001G351400 Sobic001G404500 Sobic001G404500 Sobic002G362100--Sobic001G404500 Sobic008G065200 Sobic008G065200 Sobic002G362100--Sobic008G065200 Sobic009G023401 Sobic009G023401 Sobic002G362100--Sobic009G023401 Sobic004G268500 Sobic004G268500 Sobic002G362100--Sobic004G268500 Sobic006G258700 Sobic006G258700 Sobic002G362100--Sobic006G258700 Sobic006G123500 Sobic006G123500 Sobic002G362100--Sobic006G123500 Sobic002G362100--Sobic002G046900 Sobic002G046900--Sobic006G201100 Sobic005G175600 Sobic005G175600 Sobic002G046900--Sobic005G175600 Sobic002G046900--Sobic010G035500 Sobic002G046900--Sobic006G110900 Sobic004G224500 Sobic004G224500 Sobic002G046900--Sobic004G224500 Sobic002G046900--Sobic006G123500 Sobic002G046900--Sobic010G207500 Sobic002G046900--Sobic001G404500 Sobic005G203300 Sobic005G203300 Sobic002G046900--Sobic005G203300 Sobic010G035500--Sobic004G300000 Sobic001G029200 Sobic001G029200 Sobic010G035500--Sobic001G029200 Sobic010G035500--Sobic006G214700 Sobic010G035500--Sobic002G025700 Sobic010G035500--Sobic006G201100 Sobic010G035500--Sobic009G141400 Sobic009G019100 Sobic009G019100 Sobic010G035500--Sobic009G019100 Sobic008G081900 Sobic008G081900 Sobic010G035500--Sobic008G081900 Sobic010G035500--Sobic006G193200 Sobic004G164200--Sobic006G201100 Sobic004G164200--Sobic002G046900 Sobic004G164200--Sobic010G207500 Sobic004G164200--Sobic003G306700 Sobic004G164200--Sobic002G025700 Sobic004G164200--Sobic005G175600 Sobic004G164200--Sobic002G362100 Sobic003G208300 Sobic003G208300 Sobic004G164200--Sobic003G208300 Sobic004G164200--Sobic006G123500 Sobic009G141400--Sobic006G214700 Sobic009G141400--Sobic006G110900 Sobic006G155500 Sobic006G155500 Sobic009G141400--Sobic006G155500 Sobic009G141400--Sobic010G035500 Sobic010G269400 Sobic010G269400 Sobic009G141400--Sobic010G269400 Sobic004G324100 Sobic004G324100 Sobic009G141400--Sobic004G324100 Sobic008G063200 Sobic008G063200 Sobic009G141400--Sobic008G063200 Sobic003G253300 Sobic003G253300 Sobic009G141400--Sobic003G253300 Sobic001G286600 Sobic001G286600 Sobic009G141400--Sobic001G286600 Sobic001G351400--Sobic006G258700 Sobic009G189000 Sobic009G189000 Sobic001G351400--Sobic009G189000 Sobic001G102300 Sobic001G102300 Sobic001G351400--Sobic001G102300 Sobic001G351400--Sobic002G362100 Sobic001G351400--Sobic010G207500 Sobic001G351400--Sobic001G404500 Sobic010G184600 Sobic010G184600 Sobic001G351400--Sobic010G184600 Sobic003G410900 Sobic003G410900 Sobic001G351400--Sobic003G410900 Sobic001G525900 Sobic001G525900 Sobic001G351400--Sobic001G525900
Octagon: transcription factors


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