Gene annotation
Transcriptome id Sobic.004G164200.1
Synonym CCH, Sb04g021590
Functional annotation heavy metal-associated domain containing protein, expressed
UniProt C5XTE0
Pfam PF00403
Panther DB PTHR22814 PTHR22814:SF73
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology K07213; ATOX1, ATX1, copZ, copper chaperone
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G56240 : copper chaperone
RAP-DB (Rice) LOC_Os02g32814.1 : heavy metal-associated domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020531
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G164200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G201100 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
2 Sobic.002G046900 HNH endonuclease domain-containing protein, putative, expressed -
3 Sobic.010G207500 homeobox protein knotted-1, putative, expressed -
4 Sobic.003G306700 acetamidase, putative, expressed K01455: formamidase
5 Sobic.002G025700 lectin-like receptor kinase, putative, expressed -
6 Sobic.005G175600 TKL_IRAK_DUF26-lc.24 - DUF26 kinases have homology to DUF26 containing loci, expressed -
7 Sobic.002G362100 expressed protein -
8 Sobic.003G208300 PPR repeat domain containing protein, putative, expressed -
9 Sobic.006G123500 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
10 Sobic.009G141400 transcriptional regulator, putative, expressed -
11 Sobic.004G268500 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
12 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
13 Sobic.010G205700 Leucine Rich Repeat family protein, expressed -
14 Sobic.003G096500 protein kinase domain containing protein, expressed -
15 Sobic.002G163700 expressed protein -
16 Sobic.010G130800 Acyl activating enzyme 1 AAE1 (At)(PubMedID : 27208977)@AMP-binding enzyme, putative, expressed K00666: fatty-acyl-CoA synthase
17 Sobic.004G300000 OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed K03798: ftsH, cell division protease FtsH
18 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
19 Sobic.006G140700 "aldo/keto reductase (AKR) family protein, up-regulated under drought stress , maped into a unique stay green QTL(QSTG3_6)"(PubMedID : 24655390)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
20 Sobic.010G035500 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed K13628: iron-sulfur cluster assembly protein


Gene co-expression network
sample Sobic004G164200 Sobic004G164200 Sobic006G201100 Sobic006G201100 Sobic004G164200--Sobic006G201100 Sobic002G046900 Sobic002G046900 Sobic004G164200--Sobic002G046900 Sobic010G207500 Sobic010G207500 Sobic004G164200--Sobic010G207500 Sobic003G306700 Sobic003G306700 Sobic004G164200--Sobic003G306700 Sobic002G025700 Sobic002G025700 Sobic004G164200--Sobic002G025700 Sobic005G175600 Sobic005G175600 Sobic004G164200--Sobic005G175600 Sobic002G362100 Sobic002G362100 Sobic004G164200--Sobic002G362100 Sobic003G208300 Sobic003G208300 Sobic004G164200--Sobic003G208300 Sobic006G123500 Sobic006G123500 Sobic004G164200--Sobic006G123500 Sobic010G035500 Sobic010G035500 Sobic006G201100--Sobic010G035500 Sobic006G214700 Sobic006G214700 Sobic006G201100--Sobic006G214700 Sobic006G201100--Sobic002G046900 Sobic006G201100--Sobic010G207500 Sobic004G300000 Sobic004G300000 Sobic006G201100--Sobic004G300000 Sobic006G110900 Sobic006G110900 Sobic006G201100--Sobic006G110900 Sobic006G201100--Sobic003G306700 Sobic006G201100--Sobic004G164200 Sobic009G141400 Sobic009G141400 Sobic006G201100--Sobic009G141400 Sobic002G046900--Sobic006G201100 Sobic002G046900--Sobic005G175600 Sobic002G046900--Sobic010G035500 Sobic002G046900--Sobic006G110900 Sobic004G224500 Sobic004G224500 Sobic002G046900--Sobic004G224500 Sobic002G046900--Sobic006G123500 Sobic002G046900--Sobic010G207500 Sobic001G404500 Sobic001G404500 Sobic002G046900--Sobic001G404500 Sobic005G203300 Sobic005G203300 Sobic002G046900--Sobic005G203300 Sobic010G207500--Sobic002G025700 Sobic010G207500--Sobic006G201100 Sobic010G207500--Sobic004G300000 Sobic010G207500--Sobic002G362100 Sobic010G207500--Sobic002G046900 Sobic010G207500--Sobic010G035500 Sobic010G207500--Sobic004G164200 Sobic010G207500--Sobic009G141400 Sobic001G351400 Sobic001G351400 Sobic010G207500--Sobic001G351400 Sobic003G306700--Sobic004G300000 Sobic003G306700--Sobic006G201100 Sobic003G306700--Sobic010G035500 Sobic003G306700--Sobic006G214700 Sobic009G079950 Sobic009G079950 Sobic003G306700--Sobic009G079950 Sobic003G306700--Sobic002G025700 Sobic002G331800 Sobic002G331800 Sobic003G306700--Sobic002G331800 Sobic003G306700--Sobic006G110900 Sobic003G306700--Sobic004G164200 Sobic002G025700--Sobic004G300000 Sobic004G089200 Sobic004G089200 Sobic002G025700--Sobic004G089200 Sobic002G025700--Sobic010G035500 Sobic003G359500 Sobic003G359500 Sobic002G025700--Sobic003G359500 Sobic002G025700--Sobic010G207500 Sobic002G354600 Sobic002G354600 Sobic002G025700--Sobic002G354600 Sobic004G165900 Sobic004G165900 Sobic002G025700--Sobic004G165900 Sobic010G205700 Sobic010G205700 Sobic002G025700--Sobic010G205700 Sobic006G193200 Sobic006G193200 Sobic002G025700--Sobic006G193200 Sobic005G175600--Sobic002G046900 Sobic008G063100 Sobic008G063100 Sobic005G175600--Sobic008G063100 Sobic005G175600--Sobic001G404500 Sobic005G175500 Sobic005G175500 Sobic005G175600--Sobic005G175500 Sobic002G366100 Sobic002G366100 Sobic005G175600--Sobic002G366100 Sobic001G048000 Sobic001G048000 Sobic005G175600--Sobic001G048000 Sobic005G021600 Sobic005G021600 Sobic005G175600--Sobic005G021600 Sobic001G525900 Sobic001G525900 Sobic005G175600--Sobic001G525900 Sobic002G281000 Sobic002G281000 Sobic005G175600--Sobic002G281000 Sobic002G362100--Sobic010G207500 Sobic002G362100--Sobic001G351400 Sobic002G362100--Sobic001G404500 Sobic008G065200 Sobic008G065200 Sobic002G362100--Sobic008G065200 Sobic009G023401 Sobic009G023401 Sobic002G362100--Sobic009G023401 Sobic004G268500 Sobic004G268500 Sobic002G362100--Sobic004G268500 Sobic006G258700 Sobic006G258700 Sobic002G362100--Sobic006G258700 Sobic002G362100--Sobic006G123500 Sobic002G362100--Sobic002G046900 Sobic002G386400 Sobic002G386400 Sobic003G208300--Sobic002G386400 Sobic007G132500 Sobic007G132500 Sobic003G208300--Sobic007G132500 Sobic002G038300 Sobic002G038300 Sobic003G208300--Sobic002G038300 Sobic002G163700 Sobic002G163700 Sobic003G208300--Sobic002G163700 Sobic009G004800 Sobic009G004800 Sobic003G208300--Sobic009G004800 Sobic006G197700 Sobic006G197700 Sobic003G208300--Sobic006G197700 Sobic001G161300 Sobic001G161300 Sobic003G208300--Sobic001G161300 Sobic003G208300--Sobic006G214700 Sobic003G330100 Sobic003G330100 Sobic003G208300--Sobic003G330100 Sobic006G123500--Sobic004G268500 Sobic006G123500--Sobic001G404500 Sobic004G099700 Sobic004G099700 Sobic006G123500--Sobic004G099700 Sobic005G187900 Sobic005G187900 Sobic006G123500--Sobic005G187900 Sobic003G284800 Sobic003G284800 Sobic006G123500--Sobic003G284800 Sobic006G123500--Sobic002G046900 Sobic004G063200 Sobic004G063200 Sobic006G123500--Sobic004G063200 Sobic006G123500--Sobic008G065200 Sobic002G001900 Sobic002G001900 Sobic006G123500--Sobic002G001900
Octagon: transcription factors


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