Gene annotation
Transcriptome id Sobic.004G268500.1
Synonym CCD4, Sb04g030640, NCED4
Functional annotation 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
UniProt A0A194YRR3
Pfam PF03055
Panther DB PTHR10543 PTHR10543:SF46
NCBI CDD KOG1285; Beta, beta-carotene 15,15'-dioxygenase and related enzymes
KEGG Orthology K09840; 9-cis-epoxycarotenoid dioxygenase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G19170 : nine-cis-epoxycarotenoid dioxygenase 4
RAP-DB (Rice) LOC_Os02g47510.1 : 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a045042 , Zm00025a017252 , Zm00025a021710 , Zm00025a032443 , Zm00025a016156 , Zm00025a007266
Brachypodium KQK00921 , KQK13983
Barley HORVU6Hr1G068720.3 , HORVU6Hr1G068720.2 , HORVU6Hr1G068720.1 , HORVU6Hr1G068720.5 , HORVU6Hr1G068720.4
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G268500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G123500 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
2 Sobic.008G065200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@receptor protein kinase, putative, expressed -
3 Sobic.003G284800 heat shock protein DnaJ, putative, expressed -
4 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
5 Sobic.001G071200 - -
6 Sobic.003G292600 HPT phosphotransmitter 4(PubMedID : 26465154)@Positive cytokinine regulator(PubMedID : 30367619)@histidine-containing phosphotransfer protein, putative, expressed K14490: histidine-containing phosphotransfer peotein
7 Sobic.002G046900 HNH endonuclease domain-containing protein, putative, expressed -
8 Sobic.002G025700 lectin-like receptor kinase, putative, expressed -
9 Sobic.002G362100 expressed protein -
10 Sobic.004G300000 OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed K03798: ftsH, cell division protease FtsH
11 Sobic.003G253300 ATP synthase protein I related, putative, expressed K02116: ATP synthase protein I
12 Sobic.006G055000 TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed -
13 Sobic.002G001900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
14 Sobic.003G037300 Twin LOV 1, putative, expressed -
15 Sobic.006G258700 Alternative oxidase family protein(PubMedID : 26465154)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
16 Sobic.002G354600 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
17 Sobic.005G097800 eukaryotic aspartyl protease domain containing protein, expressed -
18 Sobic.003G014300 expressed protein -
19 Sobic.004G298900 OR, putative, expressed -
20 Sobic.003G306700 acetamidase, putative, expressed K01455: formamidase


Gene co-expression network
sample Sobic004G268500 Sobic004G268500 Sobic006G123500 Sobic006G123500 Sobic004G268500--Sobic006G123500 Sobic008G065200 Sobic008G065200 Sobic004G268500--Sobic008G065200 Sobic003G284800 Sobic003G284800 Sobic004G268500--Sobic003G284800 Sobic001G404500 Sobic001G404500 Sobic004G268500--Sobic001G404500 Sobic001G071200 Sobic001G071200 Sobic004G268500--Sobic001G071200 Sobic003G292600 Sobic003G292600 Sobic004G268500--Sobic003G292600 Sobic002G046900 Sobic002G046900 Sobic004G268500--Sobic002G046900 Sobic002G025700 Sobic002G025700 Sobic004G268500--Sobic002G025700 Sobic002G362100 Sobic002G362100 Sobic004G268500--Sobic002G362100 Sobic006G123500--Sobic004G268500 Sobic006G123500--Sobic001G404500 Sobic004G099700 Sobic004G099700 Sobic006G123500--Sobic004G099700 Sobic005G187900 Sobic005G187900 Sobic006G123500--Sobic005G187900 Sobic006G123500--Sobic003G284800 Sobic006G123500--Sobic002G046900 Sobic004G063200 Sobic004G063200 Sobic006G123500--Sobic004G063200 Sobic006G123500--Sobic008G065200 Sobic002G001900 Sobic002G001900 Sobic006G123500--Sobic002G001900 Sobic008G065200--Sobic004G268500 Sobic010G193000 Sobic010G193000 Sobic008G065200--Sobic010G193000 Sobic008G065200--Sobic006G123500 Sobic008G065200--Sobic002G362100 Sobic008G065200--Sobic001G404500 Sobic008G065200--Sobic004G099700 Sobic006G258700 Sobic006G258700 Sobic008G065200--Sobic006G258700 Sobic003G255900 Sobic003G255900 Sobic008G065200--Sobic003G255900 Sobic003G014300 Sobic003G014300 Sobic008G065200--Sobic003G014300 Sobic002G112400 Sobic002G112400 Sobic003G284800--Sobic002G112400 Sobic009G062400 Sobic009G062400 Sobic003G284800--Sobic009G062400 Sobic003G253300 Sobic003G253300 Sobic003G284800--Sobic003G253300 Sobic006G265900 Sobic006G265900 Sobic003G284800--Sobic006G265900 Sobic002G061900 Sobic002G061900 Sobic003G284800--Sobic002G061900 Sobic006G097500 Sobic006G097500 Sobic003G284800--Sobic006G097500 Sobic007G053800 Sobic007G053800 Sobic003G284800--Sobic007G053800 Sobic001G128600 Sobic001G128600 Sobic003G284800--Sobic001G128600 Sobic008G006100 Sobic008G006100 Sobic003G284800--Sobic008G006100 Sobic001G404500--Sobic006G123500 Sobic001G404500--Sobic004G063200 Sobic002G281000 Sobic002G281000 Sobic001G404500--Sobic002G281000 Sobic008G063100 Sobic008G063100 Sobic001G404500--Sobic008G063100 Sobic001G525900 Sobic001G525900 Sobic001G404500--Sobic001G525900 Sobic003G410900 Sobic003G410900 Sobic001G404500--Sobic003G410900 Sobic001G404500--Sobic004G268500 Sobic009G189000 Sobic009G189000 Sobic001G404500--Sobic009G189000 Sobic001G404500--Sobic004G099700 Sobic001G071200--Sobic004G268500 Sobic005G138600 Sobic005G138600 Sobic001G071200--Sobic005G138600 Sobic002G331800 Sobic002G331800 Sobic001G071200--Sobic002G331800 Sobic010G076800 Sobic010G076800 Sobic001G071200--Sobic010G076800 Sobic001G071200--Sobic003G284800 Sobic002G354600 Sobic002G354600 Sobic001G071200--Sobic002G354600 Sobic006G214700 Sobic006G214700 Sobic001G071200--Sobic006G214700 Sobic001G071200--Sobic002G025700 Sobic001G071200--Sobic003G253300 Sobic003G292600--Sobic001G525900 Sobic003G292600--Sobic004G268500 Sobic003G292600--Sobic002G281000 Sobic009G034600 Sobic009G034600 Sobic003G292600--Sobic009G034600 Sobic005G097800 Sobic005G097800 Sobic003G292600--Sobic005G097800 Sobic003G292600--Sobic001G404500 Sobic001G102300 Sobic001G102300 Sobic003G292600--Sobic001G102300 Sobic010G241300 Sobic010G241300 Sobic003G292600--Sobic010G241300 Sobic001G048000 Sobic001G048000 Sobic003G292600--Sobic001G048000 Sobic006G201100 Sobic006G201100 Sobic002G046900--Sobic006G201100 Sobic005G175600 Sobic005G175600 Sobic002G046900--Sobic005G175600 Sobic010G035500 Sobic010G035500 Sobic002G046900--Sobic010G035500 Sobic006G110900 Sobic006G110900 Sobic002G046900--Sobic006G110900 Sobic004G224500 Sobic004G224500 Sobic002G046900--Sobic004G224500 Sobic002G046900--Sobic006G123500 Sobic010G207500 Sobic010G207500 Sobic002G046900--Sobic010G207500 Sobic002G046900--Sobic001G404500 Sobic005G203300 Sobic005G203300 Sobic002G046900--Sobic005G203300 Sobic004G300000 Sobic004G300000 Sobic002G025700--Sobic004G300000 Sobic004G089200 Sobic004G089200 Sobic002G025700--Sobic004G089200 Sobic002G025700--Sobic010G035500 Sobic003G359500 Sobic003G359500 Sobic002G025700--Sobic003G359500 Sobic002G025700--Sobic010G207500 Sobic002G025700--Sobic002G354600 Sobic004G165900 Sobic004G165900 Sobic002G025700--Sobic004G165900 Sobic010G205700 Sobic010G205700 Sobic002G025700--Sobic010G205700 Sobic006G193200 Sobic006G193200 Sobic002G025700--Sobic006G193200 Sobic002G362100--Sobic010G207500 Sobic001G351400 Sobic001G351400 Sobic002G362100--Sobic001G351400 Sobic002G362100--Sobic001G404500 Sobic002G362100--Sobic008G065200 Sobic009G023401 Sobic009G023401 Sobic002G362100--Sobic009G023401 Sobic002G362100--Sobic004G268500 Sobic002G362100--Sobic006G258700 Sobic002G362100--Sobic006G123500 Sobic002G362100--Sobic002G046900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.