Gene annotation
Transcriptome id Sobic.002G046900.1
Synonym Sb02g003980
Functional annotation HNH endonuclease domain-containing protein, putative, expressed
UniProt C5XAC8
Pfam PF01844
Panther DB PTHR33877 PTHR33877:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0004519; endonuclease activity GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G23840 : HNH endonuclease
RAP-DB (Rice) LOC_Os07g07480.1 : HNH endonuclease domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045108
Brachypodium -
Barley HORVU7Hr1G027900.1 , HORVU7Hr1G027910.1
Wheat TraesCS7D02G132900 , TraesCS7B02G034400
Populus -


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cDNA sequences
Sobic.002G046900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G201100 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
2 Sobic.005G175600 TKL_IRAK_DUF26-lc.24 - DUF26 kinases have homology to DUF26 containing loci, expressed -
3 Sobic.010G035500 IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed K13628: iron-sulfur cluster assembly protein
4 Sobic.006G110900 acetyltransferase, GNAT family, putative, expressed -
5 Sobic.004G224500 OsClp3 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
6 Sobic.006G123500 peptide methionine sulfoxide reductase, putative, expressed K07304: peptide-methionine (S)-S-oxide reductase
7 Sobic.010G207500 homeobox protein knotted-1, putative, expressed -
8 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
9 Sobic.005G203300 tropinone reductase 2, putative, expressed K08081: tropinone reductase I
10 Sobic.009G019100 expressed protein K13473: chitin elicitor-binding protein
11 Sobic.004G164200 heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
12 Sobic.008G004700 NC domain-containing protein, putative, expressed -
13 Sobic.006G214700 APO, putative, expressed -
14 Sobic.004G300000 OsFtsH7 FtsH protease, homologue of AtFtsH7, expressed K03798: ftsH, cell division protease FtsH
15 Sobic.008G063100 thioredoxin, putative, expressed K03671: thioredoxin 1
16 Sobic.004G268500 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed K09840: 9-cis-epoxycarotenoid dioxygenase
17 Sobic.003G253300 ATP synthase protein I related, putative, expressed K02116: ATP synthase protein I
18 Sobic.005G021600 expressed protein -
19 Sobic.009G205700 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
20 Sobic.006G164300 YELLOW STRIPE like 2(PubMedID : 26465154)@- -


Gene co-expression network
sample Sobic002G046900 Sobic002G046900 Sobic006G201100 Sobic006G201100 Sobic002G046900--Sobic006G201100 Sobic005G175600 Sobic005G175600 Sobic002G046900--Sobic005G175600 Sobic010G035500 Sobic010G035500 Sobic002G046900--Sobic010G035500 Sobic006G110900 Sobic006G110900 Sobic002G046900--Sobic006G110900 Sobic004G224500 Sobic004G224500 Sobic002G046900--Sobic004G224500 Sobic006G123500 Sobic006G123500 Sobic002G046900--Sobic006G123500 Sobic010G207500 Sobic010G207500 Sobic002G046900--Sobic010G207500 Sobic001G404500 Sobic001G404500 Sobic002G046900--Sobic001G404500 Sobic005G203300 Sobic005G203300 Sobic002G046900--Sobic005G203300 Sobic006G201100--Sobic010G035500 Sobic006G214700 Sobic006G214700 Sobic006G201100--Sobic006G214700 Sobic006G201100--Sobic002G046900 Sobic006G201100--Sobic010G207500 Sobic004G300000 Sobic004G300000 Sobic006G201100--Sobic004G300000 Sobic006G201100--Sobic006G110900 Sobic003G306700 Sobic003G306700 Sobic006G201100--Sobic003G306700 Sobic004G164200 Sobic004G164200 Sobic006G201100--Sobic004G164200 Sobic009G141400 Sobic009G141400 Sobic006G201100--Sobic009G141400 Sobic005G175600--Sobic002G046900 Sobic008G063100 Sobic008G063100 Sobic005G175600--Sobic008G063100 Sobic005G175600--Sobic001G404500 Sobic005G175500 Sobic005G175500 Sobic005G175600--Sobic005G175500 Sobic002G366100 Sobic002G366100 Sobic005G175600--Sobic002G366100 Sobic001G048000 Sobic001G048000 Sobic005G175600--Sobic001G048000 Sobic005G021600 Sobic005G021600 Sobic005G175600--Sobic005G021600 Sobic001G525900 Sobic001G525900 Sobic005G175600--Sobic001G525900 Sobic002G281000 Sobic002G281000 Sobic005G175600--Sobic002G281000 Sobic010G035500--Sobic004G300000 Sobic001G029200 Sobic001G029200 Sobic010G035500--Sobic001G029200 Sobic010G035500--Sobic006G214700 Sobic002G025700 Sobic002G025700 Sobic010G035500--Sobic002G025700 Sobic010G035500--Sobic006G201100 Sobic010G035500--Sobic009G141400 Sobic009G019100 Sobic009G019100 Sobic010G035500--Sobic009G019100 Sobic008G081900 Sobic008G081900 Sobic010G035500--Sobic008G081900 Sobic006G193200 Sobic006G193200 Sobic010G035500--Sobic006G193200 Sobic003G253300 Sobic003G253300 Sobic006G110900--Sobic003G253300 Sobic001G286600 Sobic001G286600 Sobic006G110900--Sobic001G286600 Sobic006G155500 Sobic006G155500 Sobic006G110900--Sobic006G155500 Sobic006G110900--Sobic006G214700 Sobic008G063200 Sobic008G063200 Sobic006G110900--Sobic008G063200 Sobic001G118400 Sobic001G118400 Sobic006G110900--Sobic001G118400 Sobic006G110900--Sobic004G224500 Sobic003G328100 Sobic003G328100 Sobic006G110900--Sobic003G328100 Sobic006G050400 Sobic006G050400 Sobic006G110900--Sobic006G050400 Sobic004G224500--Sobic006G110900 Sobic004G224500--Sobic002G046900 Sobic004G224500--Sobic005G021600 Sobic004G224500--Sobic006G214700 Sobic004G224500--Sobic001G525900 Sobic004G224500--Sobic008G063200 Sobic003G179400 Sobic003G179400 Sobic004G224500--Sobic003G179400 Sobic001G006000 Sobic001G006000 Sobic004G224500--Sobic001G006000 Sobic001G314900 Sobic001G314900 Sobic004G224500--Sobic001G314900 Sobic004G268500 Sobic004G268500 Sobic006G123500--Sobic004G268500 Sobic006G123500--Sobic001G404500 Sobic004G099700 Sobic004G099700 Sobic006G123500--Sobic004G099700 Sobic005G187900 Sobic005G187900 Sobic006G123500--Sobic005G187900 Sobic003G284800 Sobic003G284800 Sobic006G123500--Sobic003G284800 Sobic006G123500--Sobic002G046900 Sobic004G063200 Sobic004G063200 Sobic006G123500--Sobic004G063200 Sobic008G065200 Sobic008G065200 Sobic006G123500--Sobic008G065200 Sobic002G001900 Sobic002G001900 Sobic006G123500--Sobic002G001900 Sobic010G207500--Sobic002G025700 Sobic010G207500--Sobic006G201100 Sobic010G207500--Sobic004G300000 Sobic002G362100 Sobic002G362100 Sobic010G207500--Sobic002G362100 Sobic010G207500--Sobic002G046900 Sobic010G207500--Sobic010G035500 Sobic010G207500--Sobic004G164200 Sobic010G207500--Sobic009G141400 Sobic001G351400 Sobic001G351400 Sobic010G207500--Sobic001G351400 Sobic001G404500--Sobic006G123500 Sobic001G404500--Sobic004G063200 Sobic001G404500--Sobic002G281000 Sobic001G404500--Sobic008G063100 Sobic001G404500--Sobic001G525900 Sobic003G410900 Sobic003G410900 Sobic001G404500--Sobic003G410900 Sobic001G404500--Sobic004G268500 Sobic009G189000 Sobic009G189000 Sobic001G404500--Sobic009G189000 Sobic001G404500--Sobic004G099700 Sobic010G193000 Sobic010G193000 Sobic005G203300--Sobic010G193000 Sobic005G171300 Sobic005G171300 Sobic005G203300--Sobic005G171300 Sobic005G203300--Sobic002G046900 Sobic006G164300 Sobic006G164300 Sobic005G203300--Sobic006G164300 Sobic009G205700 Sobic009G205700 Sobic005G203300--Sobic009G205700 Sobic005G203300--Sobic004G224500 Sobic009G037200 Sobic009G037200 Sobic005G203300--Sobic009G037200 Sobic005G203300--Sobic001G404500 Sobic005G203300--Sobic009G019100
Octagon: transcription factors


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