Gene annotation
Transcriptome id Sobic.001G351400.2,Sobic.001G351400.1
Synonym ATMC1, MCP1B, Sb01g033620, ATMCPB1, LOL3, AMC1
Functional annotation Metacaspase 1( (PubMedID : 26759170,(PubMedID : 24597475)
ICE-like protease p20 domain containing protein, putative, expressed
UniProt A0A1B6QMU4 , A0A1B6QMS6
Pfam PF00656
Panther DB PTHR31773 PTHR31773:SF7
NCBI CDD KOG1546; Metacaspase involved in regulation of apoptosis
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004197cysteine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G02170 : metacaspase 1
RAP-DB (Rice) LOC_Os03g27120.1 : ICE-like protease p20 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a002719 , Zm00025a002718 , Zm00025a052097
Brachypodium KQK21444 , KQK21446
Barley HORVU4Hr1G090860.9 , HORVU4Hr1G090860.8 , HORVU4Hr1G090860.1 , HORVU4Hr1G090860.3 , HORVU4Hr1G090860.2 , HORVU4Hr1G090860.4 , HORVU4Hr1G090860.7 , HORVU4Hr1G090860.6 , HORVU5Hr1G023940.1 , HORVU5Hr1G023940.2 , HORVU3Hr1G095700.5 , HORVU3Hr1G095700.6 , HORVU3Hr1G095700.7 , HORVU3Hr1G095700.1 , HORVU3Hr1G095700.2 , HORVU3Hr1G095700.3 , HORVU3Hr1G095700.8 , HORVU3Hr1G095700.9 , HORVU4Hr1G090860.13 , HORVU4Hr1G090860.12
Wheat TraesCS5A02G548600 , TraesCS5A02G548600 , TraesCS3B02G471700 , TraesCS4B02G383100 , TraesCS5D02G103400 , TraesCS4B02G381800 , TraesCS4D02G358100 , TraesCS3A02G437700 , TraesCS5A02G091300 , TraesCS1A02G432800 , TraesCS4D02G358800 , TraesCS4D02G358800 , TraesCS1B02G468600 , TraesCS3D02G430000 , TraesCS5A02G548200 , TraesCS3B02G568100
Populus -


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cDNA sequences
Sobic.001G351400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G258700 Alternative oxidase family protein(PubMedID : 26465154)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
2 Sobic.009G189000 expressed protein -
3 Sobic.001G102300 homeobox domain containing protein, expressed -
4 Sobic.002G362100 expressed protein -
5 Sobic.010G207500 homeobox protein knotted-1, putative, expressed -
6 Sobic.001G404500 gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed K08059: IFI30, interferon, gamma-inducible protein 30
7 Sobic.010G184600 Homologous to Arabidopsis heme oxygenase 1 (AtHO1)(PubMedID : 11402195)@heme oxygenase 1, putative, expressed K00510: heme oxygenase 1
8 Sobic.003G410900 CRAL/TRIO domain containing protein, expressed -
9 Sobic.001G525900 homeobox domain containing protein, expressed -
10 Sobic.003G014300 expressed protein -
11 Sobic.009G034600 expressed protein -
12 Sobic.003G007700 ethylene-responsive protein related, putative, expressed -
13 Sobic.002G046900 HNH endonuclease domain-containing protein, putative, expressed -
14 Sobic.005G175500 TKL_IRAK_DUF26-lc.25 - DUF26 kinases have homology to DUF26 containing loci, expressed -
15 Sobic.010G214000 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
16 Sobic.009G023401 - -
17 Sobic.003G108600 heat shock protein DnaJ, putative, expressed -
18 Sobic.002G366100 NAD dependent epimerase/dehydratase family protein, putative, expressed -
19 Sobic.004G063200 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
20 Sobic.010G269400 DNL zinc finger domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G351400 Sobic001G351400 Sobic006G258700 Sobic006G258700 Sobic001G351400--Sobic006G258700 Sobic009G189000 Sobic009G189000 Sobic001G351400--Sobic009G189000 Sobic001G102300 Sobic001G102300 Sobic001G351400--Sobic001G102300 Sobic002G362100 Sobic002G362100 Sobic001G351400--Sobic002G362100 Sobic010G207500 Sobic010G207500 Sobic001G351400--Sobic010G207500 Sobic001G404500 Sobic001G404500 Sobic001G351400--Sobic001G404500 Sobic010G184600 Sobic010G184600 Sobic001G351400--Sobic010G184600 Sobic003G410900 Sobic003G410900 Sobic001G351400--Sobic003G410900 Sobic001G525900 Sobic001G525900 Sobic001G351400--Sobic001G525900 Sobic003G014300 Sobic003G014300 Sobic006G258700--Sobic003G014300 Sobic010G269400 Sobic010G269400 Sobic006G258700--Sobic010G269400 Sobic004G298900 Sobic004G298900 Sobic006G258700--Sobic004G298900 Sobic006G258700--Sobic001G351400 Sobic003G037300 Sobic003G037300 Sobic006G258700--Sobic003G037300 Sobic010G189200 Sobic010G189200 Sobic006G258700--Sobic010G189200 Sobic004G300000 Sobic004G300000 Sobic006G258700--Sobic004G300000 Sobic001G286600 Sobic001G286600 Sobic006G258700--Sobic001G286600 Sobic006G258700--Sobic001G404500 Sobic004G063200 Sobic004G063200 Sobic009G189000--Sobic004G063200 Sobic010G214000 Sobic010G214000 Sobic009G189000--Sobic010G214000 Sobic003G108600 Sobic003G108600 Sobic009G189000--Sobic003G108600 Sobic009G189000--Sobic001G404500 Sobic009G023401 Sobic009G023401 Sobic009G189000--Sobic009G023401 Sobic009G189000--Sobic001G351400 Sobic002G265400 Sobic002G265400 Sobic009G189000--Sobic002G265400 Sobic001G005500 Sobic001G005500 Sobic009G189000--Sobic001G005500 Sobic010G063200 Sobic010G063200 Sobic009G189000--Sobic010G063200 Sobic009G034600 Sobic009G034600 Sobic001G102300--Sobic009G034600 Sobic001G102300--Sobic003G108600 Sobic003G068800 Sobic003G068800 Sobic001G102300--Sobic003G068800 Sobic001G102300--Sobic010G214000 Sobic004G096100 Sobic004G096100 Sobic001G102300--Sobic004G096100 Sobic001G102300--Sobic001G351400 Sobic001G300201 Sobic001G300201 Sobic001G102300--Sobic001G300201 Sobic004G359200 Sobic004G359200 Sobic001G102300--Sobic004G359200 Sobic003G292600 Sobic003G292600 Sobic001G102300--Sobic003G292600 Sobic002G362100--Sobic010G207500 Sobic002G362100--Sobic001G351400 Sobic002G362100--Sobic001G404500 Sobic008G065200 Sobic008G065200 Sobic002G362100--Sobic008G065200 Sobic002G362100--Sobic009G023401 Sobic004G268500 Sobic004G268500 Sobic002G362100--Sobic004G268500 Sobic002G362100--Sobic006G258700 Sobic006G123500 Sobic006G123500 Sobic002G362100--Sobic006G123500 Sobic002G046900 Sobic002G046900 Sobic002G362100--Sobic002G046900 Sobic002G025700 Sobic002G025700 Sobic010G207500--Sobic002G025700 Sobic006G201100 Sobic006G201100 Sobic010G207500--Sobic006G201100 Sobic010G207500--Sobic004G300000 Sobic010G207500--Sobic002G362100 Sobic010G207500--Sobic002G046900 Sobic010G035500 Sobic010G035500 Sobic010G207500--Sobic010G035500 Sobic004G164200 Sobic004G164200 Sobic010G207500--Sobic004G164200 Sobic009G141400 Sobic009G141400 Sobic010G207500--Sobic009G141400 Sobic010G207500--Sobic001G351400 Sobic001G404500--Sobic006G123500 Sobic001G404500--Sobic004G063200 Sobic002G281000 Sobic002G281000 Sobic001G404500--Sobic002G281000 Sobic008G063100 Sobic008G063100 Sobic001G404500--Sobic008G063100 Sobic001G404500--Sobic001G525900 Sobic001G404500--Sobic003G410900 Sobic001G404500--Sobic004G268500 Sobic001G404500--Sobic009G189000 Sobic004G099700 Sobic004G099700 Sobic001G404500--Sobic004G099700 Sobic008G146900 Sobic008G146900 Sobic010G184600--Sobic008G146900 Sobic010G184600--Sobic006G258700 Sobic010G184600--Sobic001G351400 Sobic010G184600--Sobic003G014300 Sobic003G343400 Sobic003G343400 Sobic010G184600--Sobic003G343400 Sobic001G418700 Sobic001G418700 Sobic010G184600--Sobic001G418700 Sobic003G007700 Sobic003G007700 Sobic010G184600--Sobic003G007700 Sobic010G184600--Sobic009G034600 Sobic004G189900 Sobic004G189900 Sobic010G184600--Sobic004G189900 Sobic003G410900--Sobic001G404500 Sobic006G060800 Sobic006G060800 Sobic003G410900--Sobic006G060800 Sobic003G410900--Sobic004G063200 Sobic003G096500 Sobic003G096500 Sobic003G410900--Sobic003G096500 Sobic003G410900--Sobic001G351400 Sobic003G410900--Sobic004G099700 Sobic003G410900--Sobic006G123500 Sobic003G410900--Sobic009G189000 Sobic006G164300 Sobic006G164300 Sobic003G410900--Sobic006G164300 Sobic001G525900--Sobic002G281000 Sobic001G525900--Sobic001G404500 Sobic001G019300 Sobic001G019300 Sobic001G525900--Sobic001G019300 Sobic005G021600 Sobic005G021600 Sobic001G525900--Sobic005G021600 Sobic001G525900--Sobic006G164300 Sobic001G048000 Sobic001G048000 Sobic001G525900--Sobic001G048000 Sobic001G525900--Sobic008G063100 Sobic001G525900--Sobic004G063200 Sobic001G321600 Sobic001G321600 Sobic001G525900--Sobic001G321600
Octagon: transcription factors


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