Gene annotation
Transcriptome id Sobic.001G395400.1,Sobic.001G395400.2
Synonym UBC32, Sb01g037440
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt A0A1B6QNP1 , A0A1B6QNM6
Pfam PF00179
Panther DB PTHR24067:SF54 PTHR24067
NCBI CDD KOG0417; Ubiquitin-protein ligase KOG0428Non-canonical ubiquitin conjugating enzyme 1
KEGG Orthology K10578; UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G17000 : ubiquitin-conjugating enzyme 32
RAP-DB (Rice) LOC_Os03g19500.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a052553 , Zm00025a002141
Brachypodium KQK21993
Barley HORVU4Hr1G053670.5 , HORVU4Hr1G053670.4 , HORVU4Hr1G053670.1 , HORVU4Hr1G053670.3 , HORVU4Hr1G053670.2
Wheat TraesCS4A02G121400 , TraesCS4B02G181500 , TraesCS4D02G184500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G395400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G166100 no apical meristem protein, putative, expressed -
2 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
3 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
4 Sobic.003G416400 WD40-like domain containing protein, putative, expressed -
5 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
6 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
7 Sobic.010G000900 spotted leaf 11, putative, expressed -
8 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
9 Sobic.009G165800 G10 protein, putative, expressed K12873: BUD31, bud site selection protein 31
10 Sobic.002G375300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
11 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
12 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
13 Sobic.001G541100 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
14 Sobic.001G296900 dual specificity protein phosphatase, putative, expressed -
15 Sobic.004G001400 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
16 Sobic.002G110700 uncharacterized ACR, YggU family COG1872 containing protein, expressed K09131: uncharacterized protein
17 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
18 Sobic.003G050600 expressed protein -
19 Sobic.001G078500 expressed protein -
20 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic001G395400 Sobic001G395400 Sobic007G166100 Sobic007G166100 Sobic001G395400--Sobic007G166100 Sobic002G400000 Sobic002G400000 Sobic001G395400--Sobic002G400000 Sobic006G263900 Sobic006G263900 Sobic001G395400--Sobic006G263900 Sobic003G416400 Sobic003G416400 Sobic001G395400--Sobic003G416400 Sobic010G168600 Sobic010G168600 Sobic001G395400--Sobic010G168600 Sobic003G077900 Sobic003G077900 Sobic001G395400--Sobic003G077900 Sobic010G000900 Sobic010G000900 Sobic001G395400--Sobic010G000900 Sobic001G057800 Sobic001G057800 Sobic001G395400--Sobic001G057800 Sobic009G165800 Sobic009G165800 Sobic001G395400--Sobic009G165800 Sobic007G166100--Sobic001G395400 Sobic007G166100--Sobic010G000900 Sobic004G356900 Sobic004G356900 Sobic007G166100--Sobic004G356900 Sobic007G166100--Sobic002G400000 Sobic004G104900 Sobic004G104900 Sobic007G166100--Sobic004G104900 Sobic009G004600 Sobic009G004600 Sobic007G166100--Sobic009G004600 Sobic001G085100 Sobic001G085100 Sobic007G166100--Sobic001G085100 Sobic010G027600 Sobic010G027600 Sobic007G166100--Sobic010G027600 Sobic004G066200 Sobic004G066200 Sobic007G166100--Sobic004G066200 Sobic007G168600 Sobic007G168600 Sobic002G400000--Sobic007G168600 Sobic002G400000--Sobic003G077900 Sobic009G198500 Sobic009G198500 Sobic002G400000--Sobic009G198500 Sobic004G130900 Sobic004G130900 Sobic002G400000--Sobic004G130900 Sobic001G433400 Sobic001G433400 Sobic002G400000--Sobic001G433400 Sobic002G400000--Sobic001G395400 Sobic004G327300 Sobic004G327300 Sobic002G400000--Sobic004G327300 Sobic002G400000--Sobic009G004600 Sobic002G400000--Sobic010G000900 Sobic010G083700 Sobic010G083700 Sobic006G263900--Sobic010G083700 Sobic001G054200 Sobic001G054200 Sobic006G263900--Sobic001G054200 Sobic006G263900--Sobic010G168600 Sobic006G263900--Sobic001G395400 Sobic001G078500 Sobic001G078500 Sobic006G263900--Sobic001G078500 Sobic006G212100 Sobic006G212100 Sobic006G263900--Sobic006G212100 Sobic010G253800 Sobic010G253800 Sobic006G263900--Sobic010G253800 Sobic009G246950 Sobic009G246950 Sobic006G263900--Sobic009G246950 Sobic003G007500 Sobic003G007500 Sobic006G263900--Sobic003G007500 Sobic003G416400--Sobic001G395400 Sobic002G105200 Sobic002G105200 Sobic003G416400--Sobic002G105200 Sobic002G375300 Sobic002G375300 Sobic003G416400--Sobic002G375300 Sobic003G416400--Sobic001G057800 Sobic003G416400--Sobic003G077900 Sobic003G416400--Sobic002G400000 Sobic003G201900 Sobic003G201900 Sobic003G416400--Sobic003G201900 Sobic002G385900 Sobic002G385900 Sobic003G416400--Sobic002G385900 Sobic001G323000 Sobic001G323000 Sobic003G416400--Sobic001G323000 Sobic010G168600--Sobic010G083700 Sobic010G168600--Sobic001G078500 Sobic010G168600--Sobic009G246950 Sobic002G352700 Sobic002G352700 Sobic010G168600--Sobic002G352700 Sobic010G168600--Sobic006G263900 Sobic010G168600--Sobic003G007500 Sobic009G171700 Sobic009G171700 Sobic010G168600--Sobic009G171700 Sobic002G256300 Sobic002G256300 Sobic010G168600--Sobic002G256300 Sobic010G168600--Sobic004G104900 Sobic003G077900--Sobic002G400000 Sobic003G077900--Sobic007G168600 Sobic003G217400 Sobic003G217400 Sobic003G077900--Sobic003G217400 Sobic010G188100 Sobic010G188100 Sobic003G077900--Sobic010G188100 Sobic004G060600 Sobic004G060600 Sobic003G077900--Sobic004G060600 Sobic001G220400 Sobic001G220400 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic009G219900 Sobic009G219900 Sobic003G077900--Sobic009G219900 Sobic003G077900--Sobic004G130900 Sobic010G000900--Sobic002G400000 Sobic003G012200 Sobic003G012200 Sobic010G000900--Sobic003G012200 Sobic001G047400 Sobic001G047400 Sobic010G000900--Sobic001G047400 Sobic003G261400 Sobic003G261400 Sobic010G000900--Sobic003G261400 Sobic010G000900--Sobic004G130900 Sobic001G051200 Sobic001G051200 Sobic010G000900--Sobic001G051200 Sobic010G000900--Sobic001G323000 Sobic001G388200 Sobic001G388200 Sobic010G000900--Sobic001G388200 Sobic010G000900--Sobic001G085100 Sobic001G057800--Sobic001G323000 Sobic001G057800--Sobic002G400000 Sobic001G057800--Sobic002G352700 Sobic001G057800--Sobic002G385900 Sobic001G158500 Sobic001G158500 Sobic001G057800--Sobic001G158500 Sobic001G057800--Sobic004G130900 Sobic001G057800--Sobic010G000900 Sobic001G057800--Sobic010G168600 Sobic009G207000 Sobic009G207000 Sobic001G057800--Sobic009G207000 Sobic001G080700 Sobic001G080700 Sobic009G165800--Sobic001G080700 Sobic009G165800--Sobic001G047400 Sobic006G101700 Sobic006G101700 Sobic009G165800--Sobic006G101700 Sobic002G110700 Sobic002G110700 Sobic009G165800--Sobic002G110700 Sobic003G015900 Sobic003G015900 Sobic009G165800--Sobic003G015900 Sobic009G165800--Sobic010G083700 Sobic010G251000 Sobic010G251000 Sobic009G165800--Sobic010G251000 Sobic004G121100 Sobic004G121100 Sobic009G165800--Sobic004G121100 Sobic003G264200 Sobic003G264200 Sobic009G165800--Sobic003G264200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.