Gene annotation
Transcriptome id Sobic.001G541100.1
Synonym Sb01g050330
Functional annotation signal recognition particle receptor, putative, expressed
UniProt C5WMT6
Pfam PF01656 PF02881 PF04086
Panther DB PTHR11564 PTHR11564:SF16
NCBI CDD -
KEGG Orthology K13431; signal recognition particle receptor subunit alpha
Gene Ontology GO:0006614; SRP-dependent cotranslational protein targeting to membrane GO:0005525GTP binding GO:0006886intracellular protein transport GO:0005785signal recognition particle receptor complex GO:0005047signal recognition particle binding GO:0003924GTPase activity


Orthologs (automatic annotation)
TAIR AT4G30600 : signal recognition particle receptor alpha subunit family protein
RAP-DB (Rice) LOC_Os08g37444.3 : signal recognition particle receptor, putative, expressed
MaizeGDB (Corn) Zm00025a000131
Brachypodium KQJ94447 , KQK24115
Barley HORVU4Hr1G087720.6 , HORVU4Hr1G087720.8 , HORVU4Hr1G087720.3 , HORVU4Hr1G087720.7 , HORVU4Hr1G087720.4 , HORVU4Hr1G087720.5
Wheat TraesCS4B02G367200 , TraesCS4D02G360300 , TraesCS5A02G534900
Populus -


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cDNA sequences
Sobic.001G541100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G219000 ANTH/ENTH domain containing protein, putative, expressed -
2 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
3 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
4 Sobic.009G138100 disease resistance protein RGA3, putative, expressed -
5 Sobic.006G209400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
6 Sobic.001G395400 ubiquitin-conjugating enzyme, putative, expressed K10578: UBE2J1, NCUBE1, ubiquitin-conjugating enzyme E2 J1
7 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
8 Sobic.001G105500 heat shock protein DnaJ, putative, expressed -
9 Sobic.002G134600 nucleic acid binding protein, putative, expressed -
10 Sobic.001G516100 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
11 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
12 Sobic.001G031600 calmodulin binding protein, putative, expressed -
13 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
14 Sobic.003G076500 MYB family transcription factor, putative, expressed -
15 Sobic.010G278200 expressed protein -
16 Sobic.005G168600 NAD dependent epimerase/dehydratase family protein, putative, expressed K10046: GDP-D-mannose 3', 5'-epimerase
17 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
18 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
19 Sobic.006G033200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
20 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4


Gene co-expression network
sample Sobic001G541100 Sobic001G541100 Sobic009G219000 Sobic009G219000 Sobic001G541100--Sobic009G219000 Sobic001G323000 Sobic001G323000 Sobic001G541100--Sobic001G323000 Sobic009G219900 Sobic009G219900 Sobic001G541100--Sobic009G219900 Sobic009G138100 Sobic009G138100 Sobic001G541100--Sobic009G138100 Sobic006G209400 Sobic006G209400 Sobic001G541100--Sobic006G209400 Sobic001G395400 Sobic001G395400 Sobic001G541100--Sobic001G395400 Sobic010G130000 Sobic010G130000 Sobic001G541100--Sobic010G130000 Sobic001G105500 Sobic001G105500 Sobic001G541100--Sobic001G105500 Sobic002G134600 Sobic002G134600 Sobic001G541100--Sobic002G134600 Sobic009G219000--Sobic001G541100 Sobic009G219000--Sobic001G323000 Sobic001G261456 Sobic001G261456 Sobic009G219000--Sobic001G261456 Sobic008G046500 Sobic008G046500 Sobic009G219000--Sobic008G046500 Sobic001G466700 Sobic001G466700 Sobic009G219000--Sobic001G466700 Sobic004G274400 Sobic004G274400 Sobic009G219000--Sobic004G274400 Sobic009G219000--Sobic009G138100 Sobic009G219000--Sobic001G105500 Sobic001G371200 Sobic001G371200 Sobic009G219000--Sobic001G371200 Sobic001G206900 Sobic001G206900 Sobic001G323000--Sobic001G206900 Sobic006G034000 Sobic006G034000 Sobic001G323000--Sobic006G034000 Sobic009G228700 Sobic009G228700 Sobic001G323000--Sobic009G228700 Sobic001G057800 Sobic001G057800 Sobic001G323000--Sobic001G057800 Sobic003G312200 Sobic003G312200 Sobic001G323000--Sobic003G312200 Sobic006G148200 Sobic006G148200 Sobic001G323000--Sobic006G148200 Sobic009G207000 Sobic009G207000 Sobic001G323000--Sobic009G207000 Sobic010G000900 Sobic010G000900 Sobic001G323000--Sobic010G000900 Sobic001G085100 Sobic001G085100 Sobic001G323000--Sobic001G085100 Sobic010G188100 Sobic010G188100 Sobic009G219900--Sobic010G188100 Sobic001G220400 Sobic001G220400 Sobic009G219900--Sobic001G220400 Sobic003G077900 Sobic003G077900 Sobic009G219900--Sobic003G077900 Sobic009G219900--Sobic001G541100 Sobic001G328200 Sobic001G328200 Sobic009G219900--Sobic001G328200 Sobic006G225600 Sobic006G225600 Sobic009G219900--Sobic006G225600 Sobic010G101500 Sobic010G101500 Sobic009G219900--Sobic010G101500 Sobic001G414500 Sobic001G414500 Sobic009G219900--Sobic001G414500 Sobic002G431600 Sobic002G431600 Sobic009G219900--Sobic002G431600 Sobic010G278200 Sobic010G278200 Sobic009G138100--Sobic010G278200 Sobic009G138100--Sobic010G130000 Sobic003G248200 Sobic003G248200 Sobic009G138100--Sobic003G248200 Sobic001G124200 Sobic001G124200 Sobic009G138100--Sobic001G124200 Sobic006G033200 Sobic006G033200 Sobic009G138100--Sobic006G033200 Sobic009G138100--Sobic009G228700 Sobic004G066200 Sobic004G066200 Sobic009G138100--Sobic004G066200 Sobic009G138100--Sobic009G219000 Sobic009G138100--Sobic001G323000 Sobic006G092400 Sobic006G092400 Sobic006G209400--Sobic006G092400 Sobic003G295900 Sobic003G295900 Sobic006G209400--Sobic003G295900 Sobic002G290400 Sobic002G290400 Sobic006G209400--Sobic002G290400 Sobic006G209400--Sobic001G541100 Sobic001G031600 Sobic001G031600 Sobic006G209400--Sobic001G031600 Sobic009G165800 Sobic009G165800 Sobic006G209400--Sobic009G165800 Sobic006G209400--Sobic001G395400 Sobic003G076500 Sobic003G076500 Sobic006G209400--Sobic003G076500 Sobic010G116400 Sobic010G116400 Sobic006G209400--Sobic010G116400 Sobic007G166100 Sobic007G166100 Sobic001G395400--Sobic007G166100 Sobic002G400000 Sobic002G400000 Sobic001G395400--Sobic002G400000 Sobic006G263900 Sobic006G263900 Sobic001G395400--Sobic006G263900 Sobic003G416400 Sobic003G416400 Sobic001G395400--Sobic003G416400 Sobic010G168600 Sobic010G168600 Sobic001G395400--Sobic010G168600 Sobic001G395400--Sobic003G077900 Sobic001G395400--Sobic010G000900 Sobic001G395400--Sobic001G057800 Sobic001G395400--Sobic009G165800 Sobic010G130000--Sobic006G033200 Sobic010G130000--Sobic010G278200 Sobic010G130000--Sobic009G138100 Sobic010G130000--Sobic006G034000 Sobic010G130000--Sobic003G312200 Sobic010G130000--Sobic001G124200 Sobic001G390800 Sobic001G390800 Sobic010G130000--Sobic001G390800 Sobic010G130000--Sobic001G085100 Sobic008G124900 Sobic008G124900 Sobic010G130000--Sobic008G124900 Sobic001G105500--Sobic001G031600 Sobic001G105500--Sobic009G219000 Sobic009G193400 Sobic009G193400 Sobic001G105500--Sobic009G193400 Sobic002G040700 Sobic002G040700 Sobic001G105500--Sobic002G040700 Sobic001G391600 Sobic001G391600 Sobic001G105500--Sobic001G391600 Sobic001G105500--Sobic001G541100 Sobic001G105500--Sobic006G225600 Sobic009G050700 Sobic009G050700 Sobic001G105500--Sobic009G050700 Sobic001G105500--Sobic001G323000 Sobic003G309200 Sobic003G309200 Sobic002G134600--Sobic003G309200 Sobic007G006900 Sobic007G006900 Sobic002G134600--Sobic007G006900 Sobic001G226700 Sobic001G226700 Sobic002G134600--Sobic001G226700 Sobic001G425800 Sobic001G425800 Sobic002G134600--Sobic001G425800 Sobic002G294800 Sobic002G294800 Sobic002G134600--Sobic002G294800 Sobic001G362200 Sobic001G362200 Sobic002G134600--Sobic001G362200 Sobic002G134600--Sobic009G219000 Sobic001G122832 Sobic001G122832 Sobic002G134600--Sobic001G122832 Sobic010G076300 Sobic010G076300 Sobic002G134600--Sobic010G076300
Octagon: transcription factors


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