Gene annotation
Transcriptome id Sobic.002G431600.5,Sobic.002G431600.2,Sobic.002G431600.3,Sobic.002G431600.1,Sobic.002G431600.6,Sobic.002G431600.4
Synonym Sb02g044090
Functional annotation protein kinase APK1B, chloroplast precursor, putative, expressed
UniProt C5X6I0 , A0A1B6QGL3
Pfam PF07714
Panther DB PTHR27001 PTHR27001:SF211
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G18610 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os07g49470.1 : protein kinase APK1B, chloroplast precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK14451 , KQK14450 , KQK14452 , KQK14445 , KQK14446 , KQK14454 , KQK14453 , PNT74522 , PNT74520 , PNT74521 , PNT74525
Barley -
Wheat TraesCS2A02G081400 , TraesCS2B02G096000 , TraesCS2D02G079200
Populus -


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cDNA sequences
Sobic.002G431600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G417900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
2 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
3 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
4 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
5 Sobic.006G033200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
6 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
7 Sobic.006G119800 leucine rich repeat containing protein, expressed -
8 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
9 Sobic.006G054500 membrane-anchored ubiquitin-fold protein, putative, expressed -
10 Sobic.001G414500 ankyrin repeat-containing protein, putative, expressed -
11 Sobic.004G119100 expressed protein -
12 Sobic.002G288900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G076500 MYB family transcription factor, putative, expressed -
14 Sobic.002G430800 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
15 Sobic.007G179800 TBC domain containing protein, expressed -
16 Sobic.002G134600 nucleic acid binding protein, putative, expressed -
17 Sobic.001G162100 WRKY94, expressed -
18 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
19 Sobic.007G019800 expressed protein -
20 Sobic.004G232800 expressed protein -


Gene co-expression network
sample Sobic002G431600 Sobic002G431600 Sobic001G417900 Sobic001G417900 Sobic002G431600--Sobic001G417900 Sobic009G219900 Sobic009G219900 Sobic002G431600--Sobic009G219900 Sobic004G301900 Sobic004G301900 Sobic002G431600--Sobic004G301900 Sobic010G130000 Sobic010G130000 Sobic002G431600--Sobic010G130000 Sobic006G033200 Sobic006G033200 Sobic002G431600--Sobic006G033200 Sobic003G077900 Sobic003G077900 Sobic002G431600--Sobic003G077900 Sobic006G119800 Sobic006G119800 Sobic002G431600--Sobic006G119800 Sobic004G060600 Sobic004G060600 Sobic002G431600--Sobic004G060600 Sobic006G054500 Sobic006G054500 Sobic002G431600--Sobic006G054500 Sobic001G417900--Sobic003G077900 Sobic001G417900--Sobic002G431600 Sobic003G122500 Sobic003G122500 Sobic001G417900--Sobic003G122500 Sobic010G277100 Sobic010G277100 Sobic001G417900--Sobic010G277100 Sobic002G071000 Sobic002G071000 Sobic001G417900--Sobic002G071000 Sobic003G299000 Sobic003G299000 Sobic001G417900--Sobic003G299000 Sobic001G049500 Sobic001G049500 Sobic001G417900--Sobic001G049500 Sobic001G427500 Sobic001G427500 Sobic001G417900--Sobic001G427500 Sobic001G414500 Sobic001G414500 Sobic001G417900--Sobic001G414500 Sobic010G188100 Sobic010G188100 Sobic009G219900--Sobic010G188100 Sobic001G220400 Sobic001G220400 Sobic009G219900--Sobic001G220400 Sobic009G219900--Sobic003G077900 Sobic001G541100 Sobic001G541100 Sobic009G219900--Sobic001G541100 Sobic001G328200 Sobic001G328200 Sobic009G219900--Sobic001G328200 Sobic006G225600 Sobic006G225600 Sobic009G219900--Sobic006G225600 Sobic010G101500 Sobic010G101500 Sobic009G219900--Sobic010G101500 Sobic009G219900--Sobic001G414500 Sobic009G219900--Sobic002G431600 Sobic010G090900 Sobic010G090900 Sobic004G301900--Sobic010G090900 Sobic003G250500 Sobic003G250500 Sobic004G301900--Sobic003G250500 Sobic002G113900 Sobic002G113900 Sobic004G301900--Sobic002G113900 Sobic004G059000 Sobic004G059000 Sobic004G301900--Sobic004G059000 Sobic004G253000 Sobic004G253000 Sobic004G301900--Sobic004G253000 Sobic001G512600 Sobic001G512600 Sobic004G301900--Sobic001G512600 Sobic007G019800 Sobic007G019800 Sobic004G301900--Sobic007G019800 Sobic001G051200 Sobic001G051200 Sobic004G301900--Sobic001G051200 Sobic004G356900 Sobic004G356900 Sobic004G301900--Sobic004G356900 Sobic010G130000--Sobic006G033200 Sobic010G278200 Sobic010G278200 Sobic010G130000--Sobic010G278200 Sobic009G138100 Sobic009G138100 Sobic010G130000--Sobic009G138100 Sobic006G034000 Sobic006G034000 Sobic010G130000--Sobic006G034000 Sobic003G312200 Sobic003G312200 Sobic010G130000--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic010G130000--Sobic001G124200 Sobic001G390800 Sobic001G390800 Sobic010G130000--Sobic001G390800 Sobic001G085100 Sobic001G085100 Sobic010G130000--Sobic001G085100 Sobic008G124900 Sobic008G124900 Sobic010G130000--Sobic008G124900 Sobic006G033200--Sobic010G130000 Sobic006G033200--Sobic008G124900 Sobic006G033200--Sobic010G278200 Sobic006G033200--Sobic009G138100 Sobic007G093800 Sobic007G093800 Sobic006G033200--Sobic007G093800 Sobic004G202500 Sobic004G202500 Sobic006G033200--Sobic004G202500 Sobic007G179800 Sobic007G179800 Sobic006G033200--Sobic007G179800 Sobic003G302900 Sobic003G302900 Sobic006G033200--Sobic003G302900 Sobic006G033200--Sobic003G312200 Sobic002G400000 Sobic002G400000 Sobic003G077900--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic003G077900--Sobic007G168600 Sobic003G217400 Sobic003G217400 Sobic003G077900--Sobic003G217400 Sobic003G077900--Sobic010G188100 Sobic003G077900--Sobic004G060600 Sobic003G077900--Sobic001G220400 Sobic004G348900 Sobic004G348900 Sobic003G077900--Sobic004G348900 Sobic003G077900--Sobic009G219900 Sobic004G130900 Sobic004G130900 Sobic003G077900--Sobic004G130900 Sobic001G281600 Sobic001G281600 Sobic006G119800--Sobic001G281600 Sobic001G387600 Sobic001G387600 Sobic006G119800--Sobic001G387600 Sobic004G121100 Sobic004G121100 Sobic006G119800--Sobic004G121100 Sobic006G119800--Sobic007G019800 Sobic006G273200 Sobic006G273200 Sobic006G119800--Sobic006G273200 Sobic010G068500 Sobic010G068500 Sobic006G119800--Sobic010G068500 Sobic006G119800--Sobic004G301900 Sobic004G119100 Sobic004G119100 Sobic006G119800--Sobic004G119100 Sobic009G233300 Sobic009G233300 Sobic006G119800--Sobic009G233300 Sobic004G060600--Sobic003G077900 Sobic004G060600--Sobic002G400000 Sobic009G131100 Sobic009G131100 Sobic004G060600--Sobic009G131100 Sobic001G428100 Sobic001G428100 Sobic004G060600--Sobic001G428100 Sobic007G203700 Sobic007G203700 Sobic004G060600--Sobic007G203700 Sobic009G198500 Sobic009G198500 Sobic004G060600--Sobic009G198500 Sobic004G060600--Sobic007G168600 Sobic003G117300 Sobic003G117300 Sobic004G060600--Sobic003G117300 Sobic001G364600 Sobic001G364600 Sobic004G060600--Sobic001G364600 Sobic007G079700 Sobic007G079700 Sobic006G054500--Sobic007G079700 Sobic009G004600 Sobic009G004600 Sobic006G054500--Sobic009G004600 Sobic006G054500--Sobic004G060600 Sobic006G054500--Sobic004G301900 Sobic006G054500--Sobic002G113900 Sobic004G074300 Sobic004G074300 Sobic006G054500--Sobic004G074300 Sobic006G054500--Sobic001G364600 Sobic002G273900 Sobic002G273900 Sobic006G054500--Sobic002G273900 Sobic006G054500--Sobic010G090900
Octagon: transcription factors


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