Gene annotation
Transcriptome id Sobic.002G430800.3
Synonym Sb02g044030
Functional annotation ribosomal protein, putative, expressed
UniProt A0A1W0W852
Pfam PF03719
Panther DB PTHR13718 PTHR13718:SF69
NCBI CDD KOG0877; 40S ribosomal protein S2/30S ribosomal protein S5
KEGG Orthology K02981; RP-S2e, small subunit ribosomal protein S2e
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G59359 : Ribosomal protein S5 family protein
RAP-DB (Rice) LOC_Os07g10660.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a045372
Brachypodium KQK20398
Barley HORVU3Hr1G086050.4 , HORVU3Hr1G086050.1 , HORVU3Hr1G086050.2 , HORVU3Hr1G086050.3 , HORVU5Hr1G109910.5 , HORVU5Hr1G109910.4 , HORVU5Hr1G109910.3 , HORVU5Hr1G109910.2
Wheat TraesCS3D02G338200 , TraesCS5B02G468500 , TraesCS3B02G376600 , TraesCS5A02G458900 , TraesCS3A02G366100 , TraesCS5D02G470000
Populus -


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cDNA sequences
Sobic.002G430800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G178601 - -
2 Sobic.002G431600 protein kinase APK1B, chloroplast precursor, putative, expressed -
3 Sobic.002G288900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.010G263900 expressed protein -
5 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
6 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
7 Sobic.002G298300 ubiquitin-related modifier 1, putative, expressed K12161: ubiquitin related modifier 1
8 Sobic.004G061800 dimethyladenosine transferase, putative, expressed K14191: 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase
9 Sobic.004G067100 homeobox protein knotted-1, putative, expressed -
10 Sobic.010G101500 skp1 family, tetramerisation domain containing protein, expressed K03872: ELOC, elongin-C
11 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
12 Sobic.004G214100 "BC14(Ortholog in rice:Zhang et al., 2011)"(PubMedID : 31659885)@transporter family protein, putative, expressed K15281: solute carrier family 35
13 Sobic.004G001400 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
14 Sobic.006G261300 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
15 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
16 Sobic.002G122700 expressed protein -
17 Sobic.002G406600 RNA recognition motif containing protein, putative, expressed K14785: ESF2, ESF2/ABP1 family protein
18 Sobic.010G277100 regulator of ribonuclease, putative, expressed -
19 Sobic.001G440700 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
20 Sobic.002G393500 expressed protein -


Gene co-expression network
sample Sobic002G430800 Sobic002G430800 Sobic002G178601 Sobic002G178601 Sobic002G430800--Sobic002G178601 Sobic002G431600 Sobic002G431600 Sobic002G430800--Sobic002G431600 Sobic002G288900 Sobic002G288900 Sobic002G430800--Sobic002G288900 Sobic010G263900 Sobic010G263900 Sobic002G430800--Sobic010G263900 Sobic009G219900 Sobic009G219900 Sobic002G430800--Sobic009G219900 Sobic004G060600 Sobic004G060600 Sobic002G430800--Sobic004G060600 Sobic002G298300 Sobic002G298300 Sobic002G430800--Sobic002G298300 Sobic004G061800 Sobic004G061800 Sobic002G430800--Sobic004G061800 Sobic004G067100 Sobic004G067100 Sobic002G430800--Sobic004G067100 Sobic002G393500 Sobic002G393500 Sobic002G178601--Sobic002G393500 Sobic008G133600 Sobic008G133600 Sobic002G178601--Sobic008G133600 Sobic003G344900 Sobic003G344900 Sobic002G178601--Sobic003G344900 Sobic003G239800 Sobic003G239800 Sobic002G178601--Sobic003G239800 Sobic009G228800 Sobic009G228800 Sobic002G178601--Sobic009G228800 Sobic003G015900 Sobic003G015900 Sobic002G178601--Sobic003G015900 Sobic001G113000 Sobic001G113000 Sobic002G178601--Sobic001G113000 Sobic004G235000 Sobic004G235000 Sobic002G178601--Sobic004G235000 Sobic002G178601--Sobic002G430800 Sobic001G417900 Sobic001G417900 Sobic002G431600--Sobic001G417900 Sobic002G431600--Sobic009G219900 Sobic004G301900 Sobic004G301900 Sobic002G431600--Sobic004G301900 Sobic010G130000 Sobic010G130000 Sobic002G431600--Sobic010G130000 Sobic006G033200 Sobic006G033200 Sobic002G431600--Sobic006G033200 Sobic003G077900 Sobic003G077900 Sobic002G431600--Sobic003G077900 Sobic006G119800 Sobic006G119800 Sobic002G431600--Sobic006G119800 Sobic002G431600--Sobic004G060600 Sobic006G054500 Sobic006G054500 Sobic002G431600--Sobic006G054500 Sobic002G288900--Sobic002G431600 Sobic002G288900--Sobic002G430800 Sobic009G104000 Sobic009G104000 Sobic002G288900--Sobic009G104000 Sobic007G006900 Sobic007G006900 Sobic002G288900--Sobic007G006900 Sobic007G132700 Sobic007G132700 Sobic002G288900--Sobic007G132700 Sobic002G067600 Sobic002G067600 Sobic002G288900--Sobic002G067600 Sobic006G280600 Sobic006G280600 Sobic002G288900--Sobic006G280600 Sobic004G253900 Sobic004G253900 Sobic002G288900--Sobic004G253900 Sobic007G203300 Sobic007G203300 Sobic002G288900--Sobic007G203300 Sobic009G133400 Sobic009G133400 Sobic010G263900--Sobic009G133400 Sobic004G348100 Sobic004G348100 Sobic010G263900--Sobic004G348100 Sobic003G248600 Sobic003G248600 Sobic010G263900--Sobic003G248600 Sobic006G242300 Sobic006G242300 Sobic010G263900--Sobic006G242300 Sobic010G263900--Sobic002G430800 Sobic010G263900--Sobic002G178601 Sobic001G467300 Sobic001G467300 Sobic010G263900--Sobic001G467300 Sobic001G073000 Sobic001G073000 Sobic010G263900--Sobic001G073000 Sobic003G405900 Sobic003G405900 Sobic010G263900--Sobic003G405900 Sobic010G188100 Sobic010G188100 Sobic009G219900--Sobic010G188100 Sobic001G220400 Sobic001G220400 Sobic009G219900--Sobic001G220400 Sobic009G219900--Sobic003G077900 Sobic001G541100 Sobic001G541100 Sobic009G219900--Sobic001G541100 Sobic001G328200 Sobic001G328200 Sobic009G219900--Sobic001G328200 Sobic006G225600 Sobic006G225600 Sobic009G219900--Sobic006G225600 Sobic010G101500 Sobic010G101500 Sobic009G219900--Sobic010G101500 Sobic001G414500 Sobic001G414500 Sobic009G219900--Sobic001G414500 Sobic009G219900--Sobic002G431600 Sobic004G060600--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic004G060600--Sobic002G400000 Sobic009G131100 Sobic009G131100 Sobic004G060600--Sobic009G131100 Sobic001G428100 Sobic001G428100 Sobic004G060600--Sobic001G428100 Sobic007G203700 Sobic007G203700 Sobic004G060600--Sobic007G203700 Sobic009G198500 Sobic009G198500 Sobic004G060600--Sobic009G198500 Sobic007G168600 Sobic007G168600 Sobic004G060600--Sobic007G168600 Sobic003G117300 Sobic003G117300 Sobic004G060600--Sobic003G117300 Sobic001G364600 Sobic001G364600 Sobic004G060600--Sobic001G364600 Sobic009G199700 Sobic009G199700 Sobic002G298300--Sobic009G199700 Sobic003G127300 Sobic003G127300 Sobic002G298300--Sobic003G127300 Sobic002G298300--Sobic004G060600 Sobic002G078400 Sobic002G078400 Sobic002G298300--Sobic002G078400 Sobic004G352900 Sobic004G352900 Sobic002G298300--Sobic004G352900 Sobic010G090900 Sobic010G090900 Sobic002G298300--Sobic010G090900 Sobic009G156300 Sobic009G156300 Sobic002G298300--Sobic009G156300 Sobic002G266800 Sobic002G266800 Sobic002G298300--Sobic002G266800 Sobic001G147100 Sobic001G147100 Sobic002G298300--Sobic001G147100 Sobic001G440700 Sobic001G440700 Sobic004G061800--Sobic001G440700 Sobic001G288800 Sobic001G288800 Sobic004G061800--Sobic001G288800 Sobic002G371100 Sobic002G371100 Sobic004G061800--Sobic002G371100 Sobic001G491100 Sobic001G491100 Sobic004G061800--Sobic001G491100 Sobic004G061800--Sobic002G078400 Sobic004G103700 Sobic004G103700 Sobic004G061800--Sobic004G103700 Sobic004G020000 Sobic004G020000 Sobic004G061800--Sobic004G020000 Sobic007G091000 Sobic007G091000 Sobic004G061800--Sobic007G091000 Sobic009G232000 Sobic009G232000 Sobic004G061800--Sobic009G232000 Sobic004G080100 Sobic004G080100 Sobic004G067100--Sobic004G080100 Sobic003G246700 Sobic003G246700 Sobic004G067100--Sobic003G246700 Sobic002G166900 Sobic002G166900 Sobic004G067100--Sobic002G166900 Sobic003G117900 Sobic003G117900 Sobic004G067100--Sobic003G117900 Sobic001G508100 Sobic001G508100 Sobic004G067100--Sobic001G508100 Sobic004G167400 Sobic004G167400 Sobic004G067100--Sobic004G167400 Sobic002G226900 Sobic002G226900 Sobic004G067100--Sobic002G226900 Sobic006G090000 Sobic006G090000 Sobic004G067100--Sobic006G090000 Sobic004G067100--Sobic003G077900
Octagon: transcription factors


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