Gene annotation
Transcriptome id Sobic.001G440700.1
Synonym Sb01g041420
Functional annotation ribosomal protein L7Ae, putative, expressed
UniProt C5WRK2
Pfam PF01248
Panther DB PTHR23105 PTHR23105:SF49
NCBI CDD KOG3387; 60S ribosomal protein 15.5kD/SNU13, NHP2/L7A family (includes ribonuclease P subunit p38), involved in splicing
KEGG Orthology K12845; SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G20160 : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
RAP-DB (Rice) LOC_Os03g13800.1 : ribosomal protein L7Ae, putative, expressed
MaizeGDB (Corn) Zm00025a001511 , Zm00025a052920 , Zm00025a029270
Brachypodium KQJ96137
Barley HORVU4Hr1G064020.2 , HORVU4Hr1G064020.3 , HORVU4Hr1G064020.1
Wheat TraesCS4D02G229300 , TraesCS4A02G072500 , TraesCS4B02G228400
Populus -


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cDNA sequences
Sobic.001G440700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G101500 skp1 family, tetramerisation domain containing protein, expressed K03872: ELOC, elongin-C
2 Sobic.001G415000 expressed protein -
3 Sobic.004G020000 translation initiation factor eIF3 subunit, putative, expressed K03245: translation initiation factor 3 subunit J
4 Sobic.001G040800 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
5 Sobic.004G321900 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
6 Sobic.004G061800 dimethyladenosine transferase, putative, expressed K14191: 18S rRNA (adenine1779-N6/adenine1780-N6)-dimethyltransferase
7 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
8 Sobic.009G104000 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
9 Sobic.001G283500 VHS and GAT domain containing protein, expressed -
10 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
11 Sobic.009G001400 SNF7 domain containing protein, putative, expressed K12198: CHMP5, charged multivesicular body protein 5
12 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
13 Sobic.002G293300 octicosapeptide/Phox/Bem1p, putative, expressed -
14 Sobic.009G203100 expressed protein -
15 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
16 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
17 Sobic.004G350300 No apical meristem protein, putative, expressed -
18 Sobic.005G176000 zinc finger family protein, putative, expressed -
19 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
20 Sobic.002G084500 expressed protein -


Gene co-expression network
sample Sobic001G440700 Sobic001G440700 Sobic010G101500 Sobic010G101500 Sobic001G440700--Sobic010G101500 Sobic001G415000 Sobic001G415000 Sobic001G440700--Sobic001G415000 Sobic004G020000 Sobic004G020000 Sobic001G440700--Sobic004G020000 Sobic001G040800 Sobic001G040800 Sobic001G440700--Sobic001G040800 Sobic004G321900 Sobic004G321900 Sobic001G440700--Sobic004G321900 Sobic004G061800 Sobic004G061800 Sobic001G440700--Sobic004G061800 Sobic003G248600 Sobic003G248600 Sobic001G440700--Sobic003G248600 Sobic009G104000 Sobic009G104000 Sobic001G440700--Sobic009G104000 Sobic001G283500 Sobic001G283500 Sobic001G440700--Sobic001G283500 Sobic010G188100 Sobic010G188100 Sobic010G101500--Sobic010G188100 Sobic003G220600 Sobic003G220600 Sobic010G101500--Sobic003G220600 Sobic001G220400 Sobic001G220400 Sobic010G101500--Sobic001G220400 Sobic002G045300 Sobic002G045300 Sobic010G101500--Sobic002G045300 Sobic003G077900 Sobic003G077900 Sobic010G101500--Sobic003G077900 Sobic010G101500--Sobic001G440700 Sobic002G122700 Sobic002G122700 Sobic010G101500--Sobic002G122700 Sobic002G400000 Sobic002G400000 Sobic010G101500--Sobic002G400000 Sobic009G219900 Sobic009G219900 Sobic010G101500--Sobic009G219900 Sobic002G083266 Sobic002G083266 Sobic001G415000--Sobic002G083266 Sobic001G415000--Sobic001G440700 Sobic006G264300 Sobic006G264300 Sobic001G415000--Sobic006G264300 Sobic001G415000--Sobic004G020000 Sobic010G026700 Sobic010G026700 Sobic001G415000--Sobic010G026700 Sobic002G202300 Sobic002G202300 Sobic001G415000--Sobic002G202300 Sobic002G385900 Sobic002G385900 Sobic001G415000--Sobic002G385900 Sobic001G415000--Sobic001G040800 Sobic001G224400 Sobic001G224400 Sobic001G415000--Sobic001G224400 Sobic005G034400 Sobic005G034400 Sobic004G020000--Sobic005G034400 Sobic004G020000--Sobic003G220600 Sobic004G020000--Sobic002G045300 Sobic004G020000--Sobic002G083266 Sobic004G020000--Sobic001G440700 Sobic010G042100 Sobic010G042100 Sobic004G020000--Sobic010G042100 Sobic004G020000--Sobic006G264300 Sobic004G020000--Sobic001G415000 Sobic002G153500 Sobic002G153500 Sobic004G020000--Sobic002G153500 Sobic002G194100 Sobic002G194100 Sobic001G040800--Sobic002G194100 Sobic003G253000 Sobic003G253000 Sobic001G040800--Sobic003G253000 Sobic009G001400 Sobic009G001400 Sobic001G040800--Sobic009G001400 Sobic002G363100 Sobic002G363100 Sobic001G040800--Sobic002G363100 Sobic001G040800--Sobic002G202300 Sobic003G130800 Sobic003G130800 Sobic001G040800--Sobic003G130800 Sobic002G355300 Sobic002G355300 Sobic001G040800--Sobic002G355300 Sobic007G114200 Sobic007G114200 Sobic001G040800--Sobic007G114200 Sobic007G088000 Sobic007G088000 Sobic001G040800--Sobic007G088000 Sobic004G321900--Sobic003G248600 Sobic002G166900 Sobic002G166900 Sobic004G321900--Sobic002G166900 Sobic004G350300 Sobic004G350300 Sobic004G321900--Sobic004G350300 Sobic009G005900 Sobic009G005900 Sobic004G321900--Sobic009G005900 Sobic009G257600 Sobic009G257600 Sobic004G321900--Sobic009G257600 Sobic007G168600 Sobic007G168600 Sobic004G321900--Sobic007G168600 Sobic004G321900--Sobic001G440700 Sobic001G283200 Sobic001G283200 Sobic004G321900--Sobic001G283200 Sobic004G321900--Sobic003G220600 Sobic004G061800--Sobic001G440700 Sobic001G288800 Sobic001G288800 Sobic004G061800--Sobic001G288800 Sobic002G371100 Sobic002G371100 Sobic004G061800--Sobic002G371100 Sobic001G491100 Sobic001G491100 Sobic004G061800--Sobic001G491100 Sobic002G078400 Sobic002G078400 Sobic004G061800--Sobic002G078400 Sobic004G103700 Sobic004G103700 Sobic004G061800--Sobic004G103700 Sobic004G061800--Sobic004G020000 Sobic007G091000 Sobic007G091000 Sobic004G061800--Sobic007G091000 Sobic009G232000 Sobic009G232000 Sobic004G061800--Sobic009G232000 Sobic003G248600--Sobic003G220600 Sobic007G186300 Sobic007G186300 Sobic003G248600--Sobic007G186300 Sobic007G045600 Sobic007G045600 Sobic003G248600--Sobic007G045600 Sobic005G176000 Sobic005G176000 Sobic003G248600--Sobic005G176000 Sobic003G248600--Sobic004G321900 Sobic001G403700 Sobic001G403700 Sobic003G248600--Sobic001G403700 Sobic009G146100 Sobic009G146100 Sobic003G248600--Sobic009G146100 Sobic002G296300 Sobic002G296300 Sobic003G248600--Sobic002G296300 Sobic001G073000 Sobic001G073000 Sobic003G248600--Sobic001G073000 Sobic001G404100 Sobic001G404100 Sobic009G104000--Sobic001G404100 Sobic010G008100 Sobic010G008100 Sobic009G104000--Sobic010G008100 Sobic010G038700 Sobic010G038700 Sobic009G104000--Sobic010G038700 Sobic009G104000--Sobic001G440700 Sobic001G502200 Sobic001G502200 Sobic009G104000--Sobic001G502200 Sobic007G132700 Sobic007G132700 Sobic009G104000--Sobic007G132700 Sobic001G067900 Sobic001G067900 Sobic009G104000--Sobic001G067900 Sobic010G062800 Sobic010G062800 Sobic009G104000--Sobic010G062800 Sobic009G179200 Sobic009G179200 Sobic009G104000--Sobic009G179200 Sobic008G016900 Sobic008G016900 Sobic001G283500--Sobic008G016900 Sobic007G195701 Sobic007G195701 Sobic001G283500--Sobic007G195701 Sobic001G283500--Sobic001G403700 Sobic003G115800 Sobic003G115800 Sobic001G283500--Sobic003G115800 Sobic009G160200 Sobic009G160200 Sobic001G283500--Sobic009G160200 Sobic010G204300 Sobic010G204300 Sobic001G283500--Sobic010G204300 Sobic001G283500--Sobic002G296300 Sobic001G283500--Sobic010G062800 Sobic001G283500--Sobic010G188100
Octagon: transcription factors


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