Gene annotation
Transcriptome id Sobic.004G020000.1
Synonym Sb04g001850
Functional annotation translation initiation factor eIF3 subunit, putative, expressed
UniProt C5XT21
Pfam PF08597
Panther DB PTHR21681
NCBI CDD KOG4813; Translation initiation factor eIF3, p35 subunit
KEGG Orthology K03245; translation initiation factor 3 subunit J
Gene Ontology GO:0005852; eukaryotic translation initiation factor 3 complex GO:0005737cytoplasm GO:0003743translation initiation factor activity


Orthologs (automatic annotation)
TAIR AT5G37475 : Translation initiation factor eIF3 subunit
RAP-DB (Rice) LOC_Os02g02990.1 : translation initiation factor eIF3 subunit, putative, expressed
MaizeGDB (Corn) Zm00025a018775 , Zm00025a034934
Brachypodium KQJ93008
Barley HORVU6Hr1G012010.1 , HORVU6Hr1G012010.2 , HORVU6Hr1G012010.3
Wheat TraesCS6B02G089600 , TraesCS6A02G066400 , TraesCSU02G117600
Populus -


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cDNA sequences
Sobic.004G020000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G034400 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
2 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
3 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
4 Sobic.002G083266 - K00326: cytochrome-b5 reductase
5 Sobic.001G440700 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
6 Sobic.010G042100 transcription elongation factor 1, putative, expressed -
7 Sobic.006G264300 GA18008-PA, putative, expressed -
8 Sobic.001G415000 expressed protein -
9 Sobic.002G153500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
10 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
11 Sobic.001G040800 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
12 Sobic.004G284500 ORM1, putative, expressed -
13 Sobic.003G368500 Yip1 domain containing protein, expressed -
14 Sobic.002G264400 metallo-beta-lactamase family protein, putative, expressed K01069: gloB, gloC, hydroxyacylglutathione hydrolase
15 Sobic.009G232000 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
16 Sobic.001G064500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
17 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
18 Sobic.002G204100 cytochrome c oxidase copper chaperone, putative, expressed K02260: cytochrome c oxidase assembly protein subunit 17
19 Sobic.008G033600 Pyruvate kinase family protein(PubMedID : 26465154)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
20 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase


Gene co-expression network
sample Sobic004G020000 Sobic004G020000 Sobic005G034400 Sobic005G034400 Sobic004G020000--Sobic005G034400 Sobic003G220600 Sobic003G220600 Sobic004G020000--Sobic003G220600 Sobic002G045300 Sobic002G045300 Sobic004G020000--Sobic002G045300 Sobic002G083266 Sobic002G083266 Sobic004G020000--Sobic002G083266 Sobic001G440700 Sobic001G440700 Sobic004G020000--Sobic001G440700 Sobic010G042100 Sobic010G042100 Sobic004G020000--Sobic010G042100 Sobic006G264300 Sobic006G264300 Sobic004G020000--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic004G020000--Sobic001G415000 Sobic002G153500 Sobic002G153500 Sobic004G020000--Sobic002G153500 Sobic008G033600 Sobic008G033600 Sobic005G034400--Sobic008G033600 Sobic004G055200 Sobic004G055200 Sobic005G034400--Sobic004G055200 Sobic001G459200 Sobic001G459200 Sobic005G034400--Sobic001G459200 Sobic005G034400--Sobic004G020000 Sobic003G253000 Sobic003G253000 Sobic005G034400--Sobic003G253000 Sobic002G264400 Sobic002G264400 Sobic005G034400--Sobic002G264400 Sobic001G224400 Sobic001G224400 Sobic005G034400--Sobic001G224400 Sobic002G267500 Sobic002G267500 Sobic005G034400--Sobic002G267500 Sobic001G288800 Sobic001G288800 Sobic005G034400--Sobic001G288800 Sobic003G248600 Sobic003G248600 Sobic003G220600--Sobic003G248600 Sobic002G202300 Sobic002G202300 Sobic003G220600--Sobic002G202300 Sobic003G220600--Sobic003G253000 Sobic003G115800 Sobic003G115800 Sobic003G220600--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic003G220600--Sobic007G059900 Sobic004G293700 Sobic004G293700 Sobic003G220600--Sobic004G293700 Sobic004G300900 Sobic004G300900 Sobic003G220600--Sobic004G300900 Sobic003G367451 Sobic003G367451 Sobic003G220600--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic003G220600--Sobic009G146100 Sobic001G433400 Sobic001G433400 Sobic002G045300--Sobic001G433400 Sobic002G045300--Sobic010G042100 Sobic002G045300--Sobic003G253000 Sobic002G045300--Sobic003G220600 Sobic004G049900 Sobic004G049900 Sobic002G045300--Sobic004G049900 Sobic002G045300--Sobic003G367451 Sobic003G130800 Sobic003G130800 Sobic002G045300--Sobic003G130800 Sobic009G135600 Sobic009G135600 Sobic002G045300--Sobic009G135600 Sobic010G101500 Sobic010G101500 Sobic002G045300--Sobic010G101500 Sobic002G083266--Sobic003G367451 Sobic002G083266--Sobic006G264300 Sobic002G083266--Sobic001G415000 Sobic009G111600 Sobic009G111600 Sobic002G083266--Sobic009G111600 Sobic002G083266--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic002G083266--Sobic006G062800 Sobic002G261900 Sobic002G261900 Sobic002G083266--Sobic002G261900 Sobic010G213400 Sobic010G213400 Sobic002G083266--Sobic010G213400 Sobic004G272800 Sobic004G272800 Sobic002G083266--Sobic004G272800 Sobic001G440700--Sobic010G101500 Sobic001G440700--Sobic001G415000 Sobic001G440700--Sobic004G020000 Sobic001G040800 Sobic001G040800 Sobic001G440700--Sobic001G040800 Sobic004G321900 Sobic004G321900 Sobic001G440700--Sobic004G321900 Sobic004G061800 Sobic004G061800 Sobic001G440700--Sobic004G061800 Sobic001G440700--Sobic003G248600 Sobic009G104000 Sobic009G104000 Sobic001G440700--Sobic009G104000 Sobic001G283500 Sobic001G283500 Sobic001G440700--Sobic001G283500 Sobic010G042100--Sobic002G045300 Sobic010G042100--Sobic001G433400 Sobic003G117900 Sobic003G117900 Sobic010G042100--Sobic003G117900 Sobic010G042100--Sobic009G135600 Sobic002G385900 Sobic002G385900 Sobic010G042100--Sobic002G385900 Sobic010G042100--Sobic003G367451 Sobic010G042100--Sobic003G253000 Sobic010G042100--Sobic004G020000 Sobic001G461900 Sobic001G461900 Sobic010G042100--Sobic001G461900 Sobic006G264300--Sobic002G264400 Sobic006G264300--Sobic002G083266 Sobic006G264300--Sobic002G202300 Sobic002G180600 Sobic002G180600 Sobic006G264300--Sobic002G180600 Sobic006G264300--Sobic002G267500 Sobic001G329100 Sobic001G329100 Sobic006G264300--Sobic001G329100 Sobic009G149400 Sobic009G149400 Sobic006G264300--Sobic009G149400 Sobic006G264300--Sobic005G034400 Sobic006G264300--Sobic003G253000 Sobic001G415000--Sobic002G083266 Sobic001G415000--Sobic001G440700 Sobic001G415000--Sobic006G264300 Sobic001G415000--Sobic004G020000 Sobic010G026700 Sobic010G026700 Sobic001G415000--Sobic010G026700 Sobic001G415000--Sobic002G202300 Sobic001G415000--Sobic002G385900 Sobic001G415000--Sobic001G040800 Sobic001G415000--Sobic001G224400 Sobic002G153500--Sobic001G224400 Sobic008G189300 Sobic008G189300 Sobic002G153500--Sobic008G189300 Sobic004G284500 Sobic004G284500 Sobic002G153500--Sobic004G284500 Sobic002G153500--Sobic004G272800 Sobic004G225500 Sobic004G225500 Sobic002G153500--Sobic004G225500 Sobic001G132100 Sobic001G132100 Sobic002G153500--Sobic001G132100 Sobic008G032100 Sobic008G032100 Sobic002G153500--Sobic008G032100 Sobic007G115100 Sobic007G115100 Sobic002G153500--Sobic007G115100 Sobic004G204900 Sobic004G204900 Sobic002G153500--Sobic004G204900
Octagon: transcription factors


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