Gene annotation
Transcriptome id Sobic.002G204100.2,Sobic.002G204100.3
Synonym Sb02g024870
Functional annotation cytochrome c oxidase copper chaperone, putative, expressed
UniProt C5XCV8
Pfam PF05051
Panther DB PTHR16719
NCBI CDD KOG3496; Cytochrome c oxidase assembly protein/Cu2+ chaperone COX17
KEGG Orthology K02260; cytochrome c oxidase assembly protein subunit 17
Gene Ontology GO:0016531; copper chaperone activity GO:0006825copper ion transport GO:0005758mitochondrial intermembrane space GO:0005507copper ion binding


Orthologs (automatic annotation)
TAIR AT1G53030 : Cytochrome C oxidase copper chaperone (COX17)
RAP-DB (Rice) LOC_Os09g25314.1 : cytochrome c oxidase copper chaperone, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G203100 expressed protein -
2 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
3 Sobic.001G459200 MYB family transcription factor, putative, expressed -
4 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
5 Sobic.005G034400 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
6 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
7 Sobic.004G055200 phosphoglycerate kinase protein, putative, expressed K00927: PGK, phosphoglycerate kinase
8 Sobic.008G189300 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
9 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
10 Sobic.001G499300 high-affinity nickel-transport family protein, putative, expressed -
11 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
12 Sobic.002G153500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
13 Sobic.003G130800 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
14 Sobic.009G149400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K15849: PAT, bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
15 Sobic.004G330700 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
16 Sobic.001G132100 expressed protein -
17 Sobic.001G340500 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G
18 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
19 Sobic.002G126600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
20 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A


Gene co-expression network
sample Sobic002G204100 Sobic002G204100 Sobic009G203100 Sobic009G203100 Sobic002G204100--Sobic009G203100 Sobic003G253000 Sobic003G253000 Sobic002G204100--Sobic003G253000 Sobic001G459200 Sobic001G459200 Sobic002G204100--Sobic001G459200 Sobic009G185800 Sobic009G185800 Sobic002G204100--Sobic009G185800 Sobic005G034400 Sobic005G034400 Sobic002G204100--Sobic005G034400 Sobic004G049900 Sobic004G049900 Sobic002G204100--Sobic004G049900 Sobic004G055200 Sobic004G055200 Sobic002G204100--Sobic004G055200 Sobic008G189300 Sobic008G189300 Sobic002G204100--Sobic008G189300 Sobic002G187500 Sobic002G187500 Sobic002G204100--Sobic002G187500 Sobic009G203100--Sobic001G459200 Sobic009G203100--Sobic002G204100 Sobic009G203100--Sobic009G185800 Sobic009G203100--Sobic003G253000 Sobic009G203100--Sobic004G055200 Sobic001G040800 Sobic001G040800 Sobic009G203100--Sobic001G040800 Sobic004G330700 Sobic004G330700 Sobic009G203100--Sobic004G330700 Sobic009G203100--Sobic005G034400 Sobic002G045300 Sobic002G045300 Sobic009G203100--Sobic002G045300 Sobic006G141500 Sobic006G141500 Sobic003G253000--Sobic006G141500 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic003G253000--Sobic004G272800 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic003G253000--Sobic002G046100 Sobic003G253000--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic003G253000--Sobic006G108400 Sobic001G459200--Sobic009G185800 Sobic001G459200--Sobic003G253000 Sobic001G499300 Sobic001G499300 Sobic001G459200--Sobic001G499300 Sobic001G459200--Sobic004G055200 Sobic001G459200--Sobic002G267500 Sobic001G459200--Sobic002G046100 Sobic001G459200--Sobic004G272800 Sobic003G181500 Sobic003G181500 Sobic001G459200--Sobic003G181500 Sobic003G130800 Sobic003G130800 Sobic001G459200--Sobic003G130800 Sobic009G185800--Sobic001G459200 Sobic009G185800--Sobic004G049900 Sobic009G185800--Sobic003G253000 Sobic009G185800--Sobic003G130800 Sobic009G185800--Sobic006G108400 Sobic003G350300 Sobic003G350300 Sobic009G185800--Sobic003G350300 Sobic009G185800--Sobic004G330700 Sobic009G185800--Sobic004G272800 Sobic009G185800--Sobic003G181500 Sobic008G033600 Sobic008G033600 Sobic005G034400--Sobic008G033600 Sobic005G034400--Sobic004G055200 Sobic005G034400--Sobic001G459200 Sobic004G020000 Sobic004G020000 Sobic005G034400--Sobic004G020000 Sobic005G034400--Sobic003G253000 Sobic002G264400 Sobic002G264400 Sobic005G034400--Sobic002G264400 Sobic001G224400 Sobic001G224400 Sobic005G034400--Sobic001G224400 Sobic005G034400--Sobic002G267500 Sobic001G288800 Sobic001G288800 Sobic005G034400--Sobic001G288800 Sobic004G049900--Sobic003G253000 Sobic004G049900--Sobic009G185800 Sobic004G049900--Sobic006G108400 Sobic004G049900--Sobic003G130800 Sobic004G049900--Sobic001G459200 Sobic004G050000 Sobic004G050000 Sobic004G049900--Sobic004G050000 Sobic001G415500 Sobic001G415500 Sobic004G049900--Sobic001G415500 Sobic004G049900--Sobic002G267500 Sobic001G281400 Sobic001G281400 Sobic004G049900--Sobic001G281400 Sobic004G055200--Sobic008G033600 Sobic004G055200--Sobic001G459200 Sobic004G055200--Sobic003G130800 Sobic004G055200--Sobic004G330700 Sobic004G055200--Sobic001G281400 Sobic004G187900 Sobic004G187900 Sobic004G055200--Sobic004G187900 Sobic004G055200--Sobic001G499300 Sobic001G477300 Sobic001G477300 Sobic004G055200--Sobic001G477300 Sobic007G051000 Sobic007G051000 Sobic004G055200--Sobic007G051000 Sobic004G225500 Sobic004G225500 Sobic008G189300--Sobic004G225500 Sobic008G189300--Sobic004G272800 Sobic008G189300--Sobic001G224400 Sobic002G153500 Sobic002G153500 Sobic008G189300--Sobic002G153500 Sobic010G154700 Sobic010G154700 Sobic008G189300--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic008G189300--Sobic001G132100 Sobic008G189300--Sobic002G187500 Sobic001G048832 Sobic001G048832 Sobic008G189300--Sobic001G048832 Sobic001G340500 Sobic001G340500 Sobic008G189300--Sobic001G340500 Sobic010G009300 Sobic010G009300 Sobic002G187500--Sobic010G009300 Sobic003G285800 Sobic003G285800 Sobic002G187500--Sobic003G285800 Sobic002G190900 Sobic002G190900 Sobic002G187500--Sobic002G190900 Sobic002G187500--Sobic002G046100 Sobic003G072300 Sobic003G072300 Sobic002G187500--Sobic003G072300 Sobic001G177800 Sobic001G177800 Sobic002G187500--Sobic001G177800 Sobic002G081600 Sobic002G081600 Sobic002G187500--Sobic002G081600 Sobic002G187500--Sobic001G281400 Sobic003G393700 Sobic003G393700 Sobic002G187500--Sobic003G393700
Octagon: transcription factors


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