Gene annotation
Transcriptome id Sobic.004G321900.1
Synonym Sb04g035230, RPT1A
Functional annotation 26S protease regulatory subunit 7, putative, expressed
UniProt C5XTQ4
Pfam PF07724
Panther DB PTHR23073
NCBI CDD -
KEGG Orthology K03061; PSMC2, 26S proteasome regulatory subunit T1
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G53750 : regulatory particle triple-A 1A
RAP-DB (Rice) LOC_Os02g54340.1 : 26S protease regulatory subunit 7, putative, expressed
MaizeGDB (Corn) Zm00025a032997 , Zm00025a022380
Brachypodium KQK09566 , KQK19178
Barley HORVU6Hr1G083150.2 , HORVU6Hr1G083150.1
Wheat TraesCS7A02G156800 , TraesCS7D02G157200 , TraesCSU02G080700 , TraesCS6B02G376500 , TraesCS6B02G376500 , TraesCS7B02G060900 , TraesCS6D02G326400
Populus -


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cDNA sequences
Sobic.004G321900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
2 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
3 Sobic.004G350300 No apical meristem protein, putative, expressed -
4 Sobic.009G005900 actin, putative, expressed K10355: actin, other eukaryote
5 Sobic.009G257600 - K12812: DDX39B, UAP56, ATP-dependent RNA helicase UAP56/SUB2
6 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
7 Sobic.001G440700 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
8 Sobic.001G283200 proteasome subunit, putative, expressed K03039: PSMD13, 26S proteasome regulatory subunit N9
9 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
10 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
12 Sobic.003G274800 mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed K17732: PMPCB, mitochondrial-processing peptidase subunit beta
13 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
14 Sobic.006G090000 DUF1771 domain containing protein, putative, expressed -
15 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
16 Sobic.010G101500 skp1 family, tetramerisation domain containing protein, expressed K03872: ELOC, elongin-C
17 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
18 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
19 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
20 Sobic.001G434900 serine palmitoyltransferase 1, putative, expressed K00654: serine palmitoyltransferase


Gene co-expression network
sample Sobic004G321900 Sobic004G321900 Sobic003G248600 Sobic003G248600 Sobic004G321900--Sobic003G248600 Sobic002G166900 Sobic002G166900 Sobic004G321900--Sobic002G166900 Sobic004G350300 Sobic004G350300 Sobic004G321900--Sobic004G350300 Sobic009G005900 Sobic009G005900 Sobic004G321900--Sobic009G005900 Sobic009G257600 Sobic009G257600 Sobic004G321900--Sobic009G257600 Sobic007G168600 Sobic007G168600 Sobic004G321900--Sobic007G168600 Sobic001G440700 Sobic001G440700 Sobic004G321900--Sobic001G440700 Sobic001G283200 Sobic001G283200 Sobic004G321900--Sobic001G283200 Sobic003G220600 Sobic003G220600 Sobic004G321900--Sobic003G220600 Sobic003G248600--Sobic003G220600 Sobic007G186300 Sobic007G186300 Sobic003G248600--Sobic007G186300 Sobic007G045600 Sobic007G045600 Sobic003G248600--Sobic007G045600 Sobic005G176000 Sobic005G176000 Sobic003G248600--Sobic005G176000 Sobic003G248600--Sobic004G321900 Sobic001G403700 Sobic001G403700 Sobic003G248600--Sobic001G403700 Sobic009G146100 Sobic009G146100 Sobic003G248600--Sobic009G146100 Sobic002G296300 Sobic002G296300 Sobic003G248600--Sobic002G296300 Sobic001G073000 Sobic001G073000 Sobic003G248600--Sobic001G073000 Sobic006G090000 Sobic006G090000 Sobic002G166900--Sobic006G090000 Sobic004G067100 Sobic004G067100 Sobic002G166900--Sobic004G067100 Sobic002G166900--Sobic001G283200 Sobic002G385900 Sobic002G385900 Sobic002G166900--Sobic002G385900 Sobic010G188100 Sobic010G188100 Sobic002G166900--Sobic010G188100 Sobic004G167400 Sobic004G167400 Sobic002G166900--Sobic004G167400 Sobic002G166900--Sobic004G321900 Sobic004G212200 Sobic004G212200 Sobic002G166900--Sobic004G212200 Sobic001G220400 Sobic001G220400 Sobic002G166900--Sobic001G220400 Sobic003G002400 Sobic003G002400 Sobic004G350300--Sobic003G002400 Sobic001G434900 Sobic001G434900 Sobic004G350300--Sobic001G434900 Sobic004G350300--Sobic003G248600 Sobic004G350300--Sobic004G321900 Sobic004G183400 Sobic004G183400 Sobic004G350300--Sobic004G183400 Sobic001G122500 Sobic001G122500 Sobic004G350300--Sobic001G122500 Sobic002G045300 Sobic002G045300 Sobic004G350300--Sobic002G045300 Sobic001G433400 Sobic001G433400 Sobic004G350300--Sobic001G433400 Sobic004G274400 Sobic004G274400 Sobic004G350300--Sobic004G274400 Sobic009G174900 Sobic009G174900 Sobic009G005900--Sobic009G174900 Sobic009G135600 Sobic009G135600 Sobic009G005900--Sobic009G135600 Sobic009G005900--Sobic004G321900 Sobic009G005900--Sobic001G433400 Sobic002G400000 Sobic002G400000 Sobic009G005900--Sobic002G400000 Sobic002G134001 Sobic002G134001 Sobic009G005900--Sobic002G134001 Sobic001G461900 Sobic001G461900 Sobic009G005900--Sobic001G461900 Sobic003G010400 Sobic003G010400 Sobic009G005900--Sobic003G010400 Sobic006G212100 Sobic006G212100 Sobic009G005900--Sobic006G212100 Sobic009G257600--Sobic001G283200 Sobic009G257600--Sobic004G321900 Sobic009G257600--Sobic002G166900 Sobic004G310500 Sobic004G310500 Sobic009G257600--Sobic004G310500 Sobic009G257600--Sobic009G005900 Sobic006G252200 Sobic006G252200 Sobic009G257600--Sobic006G252200 Sobic009G067000 Sobic009G067000 Sobic009G257600--Sobic009G067000 Sobic004G082900 Sobic004G082900 Sobic009G257600--Sobic004G082900 Sobic004G216400 Sobic004G216400 Sobic009G257600--Sobic004G216400 Sobic007G168600--Sobic002G400000 Sobic009G198500 Sobic009G198500 Sobic007G168600--Sobic009G198500 Sobic004G086600 Sobic004G086600 Sobic007G168600--Sobic004G086600 Sobic001G502200 Sobic001G502200 Sobic007G168600--Sobic001G502200 Sobic003G077900 Sobic003G077900 Sobic007G168600--Sobic003G077900 Sobic010G205300 Sobic010G205300 Sobic007G168600--Sobic010G205300 Sobic003G124800 Sobic003G124800 Sobic007G168600--Sobic003G124800 Sobic007G168600--Sobic001G461900 Sobic001G314500 Sobic001G314500 Sobic007G168600--Sobic001G314500 Sobic010G101500 Sobic010G101500 Sobic001G440700--Sobic010G101500 Sobic001G415000 Sobic001G415000 Sobic001G440700--Sobic001G415000 Sobic004G020000 Sobic004G020000 Sobic001G440700--Sobic004G020000 Sobic001G040800 Sobic001G040800 Sobic001G440700--Sobic001G040800 Sobic001G440700--Sobic004G321900 Sobic004G061800 Sobic004G061800 Sobic001G440700--Sobic004G061800 Sobic001G440700--Sobic003G248600 Sobic009G104000 Sobic009G104000 Sobic001G440700--Sobic009G104000 Sobic001G283500 Sobic001G283500 Sobic001G440700--Sobic001G283500 Sobic001G458700 Sobic001G458700 Sobic001G283200--Sobic001G458700 Sobic003G261400 Sobic003G261400 Sobic001G283200--Sobic003G261400 Sobic001G283200--Sobic006G252200 Sobic001G033500 Sobic001G033500 Sobic001G283200--Sobic001G033500 Sobic004G348900 Sobic004G348900 Sobic001G283200--Sobic004G348900 Sobic004G181900 Sobic004G181900 Sobic001G283200--Sobic004G181900 Sobic003G349300 Sobic003G349300 Sobic001G283200--Sobic003G349300 Sobic007G176200 Sobic007G176200 Sobic001G283200--Sobic007G176200 Sobic001G283200--Sobic004G082900 Sobic003G220600--Sobic003G248600 Sobic002G202300 Sobic002G202300 Sobic003G220600--Sobic002G202300 Sobic003G253000 Sobic003G253000 Sobic003G220600--Sobic003G253000 Sobic003G115800 Sobic003G115800 Sobic003G220600--Sobic003G115800 Sobic007G059900 Sobic007G059900 Sobic003G220600--Sobic007G059900 Sobic004G293700 Sobic004G293700 Sobic003G220600--Sobic004G293700 Sobic004G300900 Sobic004G300900 Sobic003G220600--Sobic004G300900 Sobic003G367451 Sobic003G367451 Sobic003G220600--Sobic003G367451 Sobic003G220600--Sobic009G146100
Octagon: transcription factors


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