Gene annotation
Transcriptome id Sobic.002G288900.3,Sobic.002G288900.2,Sobic.002G288900.1
Synonym Sb02g032080
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6QDY9 , A0A1B6QDY7
Pfam PF07762
Panther DB PTHR33074 PTHR33074:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os02g29090.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G288900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G431600 protein kinase APK1B, chloroplast precursor, putative, expressed -
2 Sobic.002G430800 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
3 Sobic.009G104000 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
4 Sobic.007G006900 shwachman-Bodian-Diamond syndrome protein, putative, expressed K14574: SDO1, ribosome maturation protein SDO1
5 Sobic.007G132700 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM motif family protein, expressed K13464: jasmonate ZIM domain-containing protein
6 Sobic.002G067600 RNA recognition motif containing protein, putative, expressed K14411: RNA-binding protein Musashi
7 Sobic.006G280600 tubulin folding cofactor B, putative, expressed K17262: TBCB, CKAP1, tubulin-specific chaperone B
8 Sobic.004G253900 BSD domain-containing protein, putative, expressed -
9 Sobic.007G203300 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
10 Sobic.003G343700 HIT zinc finger domain containing protein, expressed -
11 Sobic.002G350600 HEAT repeat family protein, putative, expressed -
12 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
13 Sobic.004G232800 expressed protein -
14 Sobic.004G132300 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
15 Sobic.006G034800 neighbor of COX4, putative, expressed -
16 Sobic.001G162100 WRKY94, expressed -
17 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
18 Sobic.004G348900 expressed protein -
19 Sobic.004G025300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
20 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54


Gene co-expression network
sample Sobic002G288900 Sobic002G288900 Sobic002G431600 Sobic002G431600 Sobic002G288900--Sobic002G431600 Sobic002G430800 Sobic002G430800 Sobic002G288900--Sobic002G430800 Sobic009G104000 Sobic009G104000 Sobic002G288900--Sobic009G104000 Sobic007G006900 Sobic007G006900 Sobic002G288900--Sobic007G006900 Sobic007G132700 Sobic007G132700 Sobic002G288900--Sobic007G132700 Sobic002G067600 Sobic002G067600 Sobic002G288900--Sobic002G067600 Sobic006G280600 Sobic006G280600 Sobic002G288900--Sobic006G280600 Sobic004G253900 Sobic004G253900 Sobic002G288900--Sobic004G253900 Sobic007G203300 Sobic007G203300 Sobic002G288900--Sobic007G203300 Sobic001G417900 Sobic001G417900 Sobic002G431600--Sobic001G417900 Sobic009G219900 Sobic009G219900 Sobic002G431600--Sobic009G219900 Sobic004G301900 Sobic004G301900 Sobic002G431600--Sobic004G301900 Sobic010G130000 Sobic010G130000 Sobic002G431600--Sobic010G130000 Sobic006G033200 Sobic006G033200 Sobic002G431600--Sobic006G033200 Sobic003G077900 Sobic003G077900 Sobic002G431600--Sobic003G077900 Sobic006G119800 Sobic006G119800 Sobic002G431600--Sobic006G119800 Sobic004G060600 Sobic004G060600 Sobic002G431600--Sobic004G060600 Sobic006G054500 Sobic006G054500 Sobic002G431600--Sobic006G054500 Sobic002G178601 Sobic002G178601 Sobic002G430800--Sobic002G178601 Sobic002G430800--Sobic002G431600 Sobic002G430800--Sobic002G288900 Sobic010G263900 Sobic010G263900 Sobic002G430800--Sobic010G263900 Sobic002G430800--Sobic009G219900 Sobic002G430800--Sobic004G060600 Sobic002G298300 Sobic002G298300 Sobic002G430800--Sobic002G298300 Sobic004G061800 Sobic004G061800 Sobic002G430800--Sobic004G061800 Sobic004G067100 Sobic004G067100 Sobic002G430800--Sobic004G067100 Sobic001G404100 Sobic001G404100 Sobic009G104000--Sobic001G404100 Sobic010G008100 Sobic010G008100 Sobic009G104000--Sobic010G008100 Sobic010G038700 Sobic010G038700 Sobic009G104000--Sobic010G038700 Sobic001G440700 Sobic001G440700 Sobic009G104000--Sobic001G440700 Sobic001G502200 Sobic001G502200 Sobic009G104000--Sobic001G502200 Sobic009G104000--Sobic007G132700 Sobic001G067900 Sobic001G067900 Sobic009G104000--Sobic001G067900 Sobic010G062800 Sobic010G062800 Sobic009G104000--Sobic010G062800 Sobic009G179200 Sobic009G179200 Sobic009G104000--Sobic009G179200 Sobic002G134600 Sobic002G134600 Sobic007G006900--Sobic002G134600 Sobic001G425800 Sobic001G425800 Sobic007G006900--Sobic001G425800 Sobic003G328600 Sobic003G328600 Sobic007G006900--Sobic003G328600 Sobic001G362200 Sobic001G362200 Sobic007G006900--Sobic001G362200 Sobic002G400200 Sobic002G400200 Sobic007G006900--Sobic002G400200 Sobic010G249100 Sobic010G249100 Sobic007G006900--Sobic010G249100 Sobic007G006900--Sobic002G067600 Sobic009G238850 Sobic009G238850 Sobic007G006900--Sobic009G238850 Sobic003G119800 Sobic003G119800 Sobic007G006900--Sobic003G119800 Sobic007G132700--Sobic009G179200 Sobic007G132700--Sobic009G104000 Sobic001G162100 Sobic001G162100 Sobic007G132700--Sobic001G162100 Sobic007G132700--Sobic010G062800 Sobic010G188100 Sobic010G188100 Sobic007G132700--Sobic010G188100 Sobic007G132700--Sobic004G253900 Sobic008G016900 Sobic008G016900 Sobic007G132700--Sobic008G016900 Sobic001G012800 Sobic001G012800 Sobic007G132700--Sobic001G012800 Sobic007G132700--Sobic009G219900 Sobic002G067100 Sobic002G067100 Sobic002G067600--Sobic002G067100 Sobic001G127000 Sobic001G127000 Sobic002G067600--Sobic001G127000 Sobic002G055100 Sobic002G055100 Sobic002G067600--Sobic002G055100 Sobic006G052500 Sobic006G052500 Sobic002G067600--Sobic006G052500 Sobic009G219000 Sobic009G219000 Sobic002G067600--Sobic009G219000 Sobic002G067600--Sobic007G006900 Sobic006G126100 Sobic006G126100 Sobic002G067600--Sobic006G126100 Sobic003G126600 Sobic003G126600 Sobic002G067600--Sobic003G126600 Sobic003G051200 Sobic003G051200 Sobic002G067600--Sobic003G051200 Sobic005G168600 Sobic005G168600 Sobic006G280600--Sobic005G168600 Sobic004G356900 Sobic004G356900 Sobic006G280600--Sobic004G356900 Sobic001G263000 Sobic001G263000 Sobic006G280600--Sobic001G263000 Sobic001G085100 Sobic001G085100 Sobic006G280600--Sobic001G085100 Sobic004G232800 Sobic004G232800 Sobic006G280600--Sobic004G232800 Sobic003G239800 Sobic003G239800 Sobic006G280600--Sobic003G239800 Sobic007G188300 Sobic007G188300 Sobic006G280600--Sobic007G188300 Sobic001G078800 Sobic001G078800 Sobic006G280600--Sobic001G078800 Sobic006G280600--Sobic009G238850 Sobic004G253900--Sobic007G132700 Sobic009G174000 Sobic009G174000 Sobic004G253900--Sobic009G174000 Sobic003G299000 Sobic003G299000 Sobic004G253900--Sobic003G299000 Sobic002G131900 Sobic002G131900 Sobic004G253900--Sobic002G131900 Sobic002G301300 Sobic002G301300 Sobic004G253900--Sobic002G301300 Sobic004G253900--Sobic003G077900 Sobic004G253900--Sobic009G219900 Sobic007G013300 Sobic007G013300 Sobic004G253900--Sobic007G013300 Sobic010G118100 Sobic010G118100 Sobic004G253900--Sobic010G118100 Sobic007G056600 Sobic007G056600 Sobic007G203300--Sobic007G056600 Sobic007G203300--Sobic006G033200 Sobic006G180000 Sobic006G180000 Sobic007G203300--Sobic006G180000 Sobic003G302900 Sobic003G302900 Sobic007G203300--Sobic003G302900 Sobic004G261600 Sobic004G261600 Sobic007G203300--Sobic004G261600 Sobic003G110000 Sobic003G110000 Sobic007G203300--Sobic003G110000 Sobic009G109925 Sobic009G109925 Sobic007G203300--Sobic009G109925 Sobic007G203300--Sobic006G126100 Sobic001G079200 Sobic001G079200 Sobic007G203300--Sobic001G079200
Octagon: transcription factors


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