Gene annotation
Transcriptome id Sobic.003G343700.2,Sobic.003G343700.1
Synonym Sb03g038770
Functional annotation HIT zinc finger domain containing protein, expressed
UniProt C5XNY8 , C5XNZ2
Pfam PF04438
Panther DB PTHR13483 PTHR13483:SF8
NCBI CDD KOG2857; Predicted MYND Zn-finger protein/hormone receptor interactor
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G28820 : HIT-type Zinc finger family protein
RAP-DB (Rice) LOC_Os01g61430.1 : HIT zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a027003
Brachypodium -
Barley -
Wheat TraesCS3B02G382700 , TraesCS3B02G382700 , TraesCS3D02G344100 , TraesCS3D02G344100 , TraesCS3A02G350100 , TraesCS3A02G350100
Populus -


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cDNA sequences
Sobic.003G343700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G288900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.002G430800 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
3 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
4 Sobic.007G132700 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM motif family protein, expressed K13464: jasmonate ZIM domain-containing protein
5 Sobic.002G166900 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
6 Sobic.004G348900 expressed protein -
7 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
8 Sobic.003G436300 expressed protein -
9 Sobic.001G434900 serine palmitoyltransferase 1, putative, expressed K00654: serine palmitoyltransferase
10 Sobic.009G104000 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
11 Sobic.007G186000 radical SAM enzyme, putative, expressed K01012: biotin synthase
12 Sobic.001G147100 pre-rRNA-processing protein TSR2, putative, expressed K14800: pre-rRNA-processing protein TSR2
13 Sobic.004G182800 glutathione S-transferase, putative, expressed K01800: maiA, maleylacetoacetate isomerase
14 Sobic.002G113800 spermidine synthase, putative, expressed K00797: speE, SRM, spermidine synthase
15 Sobic.008G115500 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
16 Sobic.002G431600 protein kinase APK1B, chloroplast precursor, putative, expressed -
17 Sobic.007G006600 expressed protein -
18 Sobic.006G261300 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
19 Sobic.001G414500 ankyrin repeat-containing protein, putative, expressed -
20 Sobic.001G440700 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13


Gene co-expression network
sample Sobic003G343700 Sobic003G343700 Sobic002G288900 Sobic002G288900 Sobic003G343700--Sobic002G288900 Sobic002G430800 Sobic002G430800 Sobic003G343700--Sobic002G430800 Sobic009G219900 Sobic009G219900 Sobic003G343700--Sobic009G219900 Sobic007G132700 Sobic007G132700 Sobic003G343700--Sobic007G132700 Sobic002G166900 Sobic002G166900 Sobic003G343700--Sobic002G166900 Sobic004G348900 Sobic004G348900 Sobic003G343700--Sobic004G348900 Sobic002G385900 Sobic002G385900 Sobic003G343700--Sobic002G385900 Sobic003G436300 Sobic003G436300 Sobic003G343700--Sobic003G436300 Sobic001G434900 Sobic001G434900 Sobic003G343700--Sobic001G434900 Sobic002G431600 Sobic002G431600 Sobic002G288900--Sobic002G431600 Sobic002G288900--Sobic002G430800 Sobic009G104000 Sobic009G104000 Sobic002G288900--Sobic009G104000 Sobic007G006900 Sobic007G006900 Sobic002G288900--Sobic007G006900 Sobic002G288900--Sobic007G132700 Sobic002G067600 Sobic002G067600 Sobic002G288900--Sobic002G067600 Sobic006G280600 Sobic006G280600 Sobic002G288900--Sobic006G280600 Sobic004G253900 Sobic004G253900 Sobic002G288900--Sobic004G253900 Sobic007G203300 Sobic007G203300 Sobic002G288900--Sobic007G203300 Sobic002G178601 Sobic002G178601 Sobic002G430800--Sobic002G178601 Sobic002G430800--Sobic002G431600 Sobic002G430800--Sobic002G288900 Sobic010G263900 Sobic010G263900 Sobic002G430800--Sobic010G263900 Sobic002G430800--Sobic009G219900 Sobic004G060600 Sobic004G060600 Sobic002G430800--Sobic004G060600 Sobic002G298300 Sobic002G298300 Sobic002G430800--Sobic002G298300 Sobic004G061800 Sobic004G061800 Sobic002G430800--Sobic004G061800 Sobic004G067100 Sobic004G067100 Sobic002G430800--Sobic004G067100 Sobic010G188100 Sobic010G188100 Sobic009G219900--Sobic010G188100 Sobic001G220400 Sobic001G220400 Sobic009G219900--Sobic001G220400 Sobic003G077900 Sobic003G077900 Sobic009G219900--Sobic003G077900 Sobic001G541100 Sobic001G541100 Sobic009G219900--Sobic001G541100 Sobic001G328200 Sobic001G328200 Sobic009G219900--Sobic001G328200 Sobic006G225600 Sobic006G225600 Sobic009G219900--Sobic006G225600 Sobic010G101500 Sobic010G101500 Sobic009G219900--Sobic010G101500 Sobic001G414500 Sobic001G414500 Sobic009G219900--Sobic001G414500 Sobic009G219900--Sobic002G431600 Sobic009G179200 Sobic009G179200 Sobic007G132700--Sobic009G179200 Sobic007G132700--Sobic009G104000 Sobic001G162100 Sobic001G162100 Sobic007G132700--Sobic001G162100 Sobic010G062800 Sobic010G062800 Sobic007G132700--Sobic010G062800 Sobic007G132700--Sobic010G188100 Sobic007G132700--Sobic004G253900 Sobic008G016900 Sobic008G016900 Sobic007G132700--Sobic008G016900 Sobic001G012800 Sobic001G012800 Sobic007G132700--Sobic001G012800 Sobic007G132700--Sobic009G219900 Sobic006G090000 Sobic006G090000 Sobic002G166900--Sobic006G090000 Sobic002G166900--Sobic004G067100 Sobic001G283200 Sobic001G283200 Sobic002G166900--Sobic001G283200 Sobic002G166900--Sobic002G385900 Sobic002G166900--Sobic010G188100 Sobic004G167400 Sobic004G167400 Sobic002G166900--Sobic004G167400 Sobic004G321900 Sobic004G321900 Sobic002G166900--Sobic004G321900 Sobic004G212200 Sobic004G212200 Sobic002G166900--Sobic004G212200 Sobic002G166900--Sobic001G220400 Sobic004G348900--Sobic001G283200 Sobic004G348900--Sobic003G077900 Sobic004G181900 Sobic004G181900 Sobic004G348900--Sobic004G181900 Sobic001G404100 Sobic001G404100 Sobic004G348900--Sobic001G404100 Sobic001G206900 Sobic001G206900 Sobic004G348900--Sobic001G206900 Sobic001G085100 Sobic001G085100 Sobic004G348900--Sobic001G085100 Sobic002G400000 Sobic002G400000 Sobic004G348900--Sobic002G400000 Sobic001G444300 Sobic001G444300 Sobic004G348900--Sobic001G444300 Sobic001G323000 Sobic001G323000 Sobic004G348900--Sobic001G323000 Sobic009G135600 Sobic009G135600 Sobic002G385900--Sobic009G135600 Sobic001G057800 Sobic001G057800 Sobic002G385900--Sobic001G057800 Sobic001G461900 Sobic001G461900 Sobic002G385900--Sobic001G461900 Sobic003G099100 Sobic003G099100 Sobic002G385900--Sobic003G099100 Sobic002G385900--Sobic002G166900 Sobic010G042100 Sobic010G042100 Sobic002G385900--Sobic010G042100 Sobic002G385900--Sobic001G323000 Sobic009G207000 Sobic009G207000 Sobic002G385900--Sobic009G207000 Sobic006G281800 Sobic006G281800 Sobic002G385900--Sobic006G281800 Sobic006G034000 Sobic006G034000 Sobic003G436300--Sobic006G034000 Sobic003G436300--Sobic001G085100 Sobic010G020300 Sobic010G020300 Sobic003G436300--Sobic010G020300 Sobic003G436300--Sobic001G057800 Sobic003G116900 Sobic003G116900 Sobic003G436300--Sobic003G116900 Sobic003G312200 Sobic003G312200 Sobic003G436300--Sobic003G312200 Sobic003G436300--Sobic001G323000 Sobic003G436300--Sobic004G348900 Sobic001G296900 Sobic001G296900 Sobic003G436300--Sobic001G296900 Sobic002G122700 Sobic002G122700 Sobic001G434900--Sobic002G122700 Sobic004G350300 Sobic004G350300 Sobic001G434900--Sobic004G350300 Sobic003G002400 Sobic003G002400 Sobic001G434900--Sobic003G002400 Sobic003G367300 Sobic003G367300 Sobic001G434900--Sobic003G367300 Sobic001G434900--Sobic006G225600 Sobic005G176000 Sobic005G176000 Sobic001G434900--Sobic005G176000 Sobic003G248600 Sobic003G248600 Sobic001G434900--Sobic003G248600 Sobic001G434900--Sobic001G162100 Sobic004G274400 Sobic004G274400 Sobic001G434900--Sobic004G274400
Octagon: transcription factors


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