Gene annotation
Transcriptome id Sobic.007G186000.2,Sobic.007G186000.1
Synonym BIO2, BIOB, Sb07g025580
Functional annotation radical SAM enzyme, putative, expressed
UniProt A0A1B6PII2 , A0A1B6PIG9
Pfam PF04055 PF04055 PF06968
Panther DB PTHR22976 PTHR22976:SF19
NCBI CDD KOG2900; Biotin synthase
KEGG Orthology K01012; biotin synthase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT2G43360 : Radical SAM superfamily protein
RAP-DB (Rice) LOC_Os08g42730.1 : radical SAM enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a033612 , Zm00025a005332
Brachypodium KQJ99204
Barley HORVU7Hr1G055990.1 , HORVU7Hr1G055990.3 , HORVU7Hr1G055990.2 , HORVU7Hr1G055990.4
Wheat TraesCS7D02G267400 , TraesCS7B02G164700 , TraesCS7A02G267300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
2 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
3 Sobic.003G436300 expressed protein -
4 Sobic.008G074700 - -
5 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
6 Sobic.008G110600 expressed protein -
7 Sobic.004G119100 expressed protein -
8 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
9 Sobic.004G182600 expressed protein -
10 Sobic.001G180900 secretory carrier-associated membrane protein 4, putative, expressed -
11 Sobic.002G172900 OBP32pep, putative, expressed -
12 Sobic.005G203800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lipase precursor, putative, expressed -
13 Sobic.006G249700 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
14 Sobic.001G270400 OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed -
15 Sobic.010G210200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
16 Sobic.001G464500 CUE domain containing protein, expressed K18667: activating signal cointegrator complex subunit 2
17 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
18 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
19 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
20 Sobic.010G030700 hydrolase, NUDIX family protein, expressed K03426: E3.6.1.22, NUDT12, NAD+ diphosphatase


Gene co-expression network
sample Sobic007G186000 Sobic007G186000 Sobic006G034000 Sobic006G034000 Sobic007G186000--Sobic006G034000 Sobic009G126900 Sobic009G126900 Sobic007G186000--Sobic009G126900 Sobic003G436300 Sobic003G436300 Sobic007G186000--Sobic003G436300 Sobic008G074700 Sobic008G074700 Sobic007G186000--Sobic008G074700 Sobic008G093000 Sobic008G093000 Sobic007G186000--Sobic008G093000 Sobic008G110600 Sobic008G110600 Sobic007G186000--Sobic008G110600 Sobic004G119100 Sobic004G119100 Sobic007G186000--Sobic004G119100 Sobic002G270500 Sobic002G270500 Sobic007G186000--Sobic002G270500 Sobic004G182600 Sobic004G182600 Sobic007G186000--Sobic004G182600 Sobic003G312200 Sobic003G312200 Sobic006G034000--Sobic003G312200 Sobic001G323000 Sobic001G323000 Sobic006G034000--Sobic001G323000 Sobic006G034000--Sobic003G436300 Sobic006G148200 Sobic006G148200 Sobic006G034000--Sobic006G148200 Sobic001G180900 Sobic001G180900 Sobic006G034000--Sobic001G180900 Sobic010G130000 Sobic010G130000 Sobic006G034000--Sobic010G130000 Sobic001G091300 Sobic001G091300 Sobic006G034000--Sobic001G091300 Sobic006G034000--Sobic008G110600 Sobic009G228700 Sobic009G228700 Sobic006G034000--Sobic009G228700 Sobic010G043400 Sobic010G043400 Sobic009G126900--Sobic010G043400 Sobic009G126900--Sobic002G270500 Sobic002G009700 Sobic002G009700 Sobic009G126900--Sobic002G009700 Sobic006G271200 Sobic006G271200 Sobic009G126900--Sobic006G271200 Sobic001G003000 Sobic001G003000 Sobic009G126900--Sobic001G003000 Sobic004G124200 Sobic004G124200 Sobic009G126900--Sobic004G124200 Sobic003G005600 Sobic003G005600 Sobic009G126900--Sobic003G005600 Sobic003G329400 Sobic003G329400 Sobic009G126900--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic009G126900--Sobic004G101900 Sobic003G436300--Sobic006G034000 Sobic001G085100 Sobic001G085100 Sobic003G436300--Sobic001G085100 Sobic010G020300 Sobic010G020300 Sobic003G436300--Sobic010G020300 Sobic001G057800 Sobic001G057800 Sobic003G436300--Sobic001G057800 Sobic003G116900 Sobic003G116900 Sobic003G436300--Sobic003G116900 Sobic003G436300--Sobic003G312200 Sobic003G436300--Sobic001G323000 Sobic004G348900 Sobic004G348900 Sobic003G436300--Sobic004G348900 Sobic001G296900 Sobic001G296900 Sobic003G436300--Sobic001G296900 Sobic008G074700--Sobic006G034000 Sobic008G074700--Sobic003G116900 Sobic008G074700--Sobic004G119100 Sobic001G098200 Sobic001G098200 Sobic008G074700--Sobic001G098200 Sobic008G074700--Sobic007G186000 Sobic005G203800 Sobic005G203800 Sobic008G074700--Sobic005G203800 Sobic008G074700--Sobic001G180900 Sobic008G074700--Sobic003G436300 Sobic003G413500 Sobic003G413500 Sobic008G074700--Sobic003G413500 Sobic001G199100 Sobic001G199100 Sobic008G093000--Sobic001G199100 Sobic010G064600 Sobic010G064600 Sobic008G093000--Sobic010G064600 Sobic001G301700 Sobic001G301700 Sobic008G093000--Sobic001G301700 Sobic008G093000--Sobic003G312200 Sobic004G275700 Sobic004G275700 Sobic008G093000--Sobic004G275700 Sobic010G229400 Sobic010G229400 Sobic008G093000--Sobic010G229400 Sobic009G207000 Sobic009G207000 Sobic008G093000--Sobic009G207000 Sobic003G087000 Sobic003G087000 Sobic008G093000--Sobic003G087000 Sobic002G244100 Sobic002G244100 Sobic008G093000--Sobic002G244100 Sobic008G110600--Sobic006G034000 Sobic003G126300 Sobic003G126300 Sobic008G110600--Sobic003G126300 Sobic008G110600--Sobic010G130000 Sobic004G178200 Sobic004G178200 Sobic008G110600--Sobic004G178200 Sobic003G036800 Sobic003G036800 Sobic008G110600--Sobic003G036800 Sobic008G110600--Sobic001G091300 Sobic002G427050 Sobic002G427050 Sobic008G110600--Sobic002G427050 Sobic008G110600--Sobic008G093000 Sobic002G427000 Sobic002G427000 Sobic008G110600--Sobic002G427000 Sobic001G253700 Sobic001G253700 Sobic004G119100--Sobic001G253700 Sobic004G119100--Sobic006G034000 Sobic006G119800 Sobic006G119800 Sobic004G119100--Sobic006G119800 Sobic003G233600 Sobic003G233600 Sobic004G119100--Sobic003G233600 Sobic001G000200 Sobic001G000200 Sobic004G119100--Sobic001G000200 Sobic010G205800 Sobic010G205800 Sobic004G119100--Sobic010G205800 Sobic003G169600 Sobic003G169600 Sobic004G119100--Sobic003G169600 Sobic007G007000 Sobic007G007000 Sobic004G119100--Sobic007G007000 Sobic010G090900 Sobic010G090900 Sobic004G119100--Sobic010G090900 Sobic007G024700 Sobic007G024700 Sobic002G270500--Sobic007G024700 Sobic001G207400 Sobic001G207400 Sobic002G270500--Sobic001G207400 Sobic004G355000 Sobic004G355000 Sobic002G270500--Sobic004G355000 Sobic005G157000 Sobic005G157000 Sobic002G270500--Sobic005G157000 Sobic002G430000 Sobic002G430000 Sobic002G270500--Sobic002G430000 Sobic002G270500--Sobic009G126900 Sobic009G094300 Sobic009G094300 Sobic002G270500--Sobic009G094300 Sobic004G113400 Sobic004G113400 Sobic002G270500--Sobic004G113400 Sobic004G269200 Sobic004G269200 Sobic002G270500--Sobic004G269200 Sobic006G028100 Sobic006G028100 Sobic004G182600--Sobic006G028100 Sobic001G130000 Sobic001G130000 Sobic004G182600--Sobic001G130000 Sobic003G061800 Sobic003G061800 Sobic004G182600--Sobic003G061800 Sobic004G182600--Sobic007G186000 Sobic003G354400 Sobic003G354400 Sobic004G182600--Sobic003G354400 Sobic004G182600--Sobic009G126900 Sobic004G345800 Sobic004G345800 Sobic004G182600--Sobic004G345800 Sobic009G034700 Sobic009G034700 Sobic004G182600--Sobic009G034700 Sobic005G217200 Sobic005G217200 Sobic004G182600--Sobic005G217200
Octagon: transcription factors


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