Gene annotation
Transcriptome id Sobic.008G110600.2,Sobic.008G110600.3
Synonym CLT2, Sb08g016490
Functional annotation expressed protein
UniProt A0A1B6PD17
Pfam PF08627
Panther DB PTHR31326 PTHR31326:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G24460 : CRT (chloroquine-resistance transporter)-like transporter 2
RAP-DB (Rice) LOC_Os12g32650.1 : expressed protein
MaizeGDB (Corn) Zm00025a040645
Brachypodium KQJ86580 , KQJ86579
Barley HORVU5Hr1G028110.2 , HORVU5Hr1G028110.1
Wheat TraesCS5D02G114600 , TraesCS5D02G114600 , TraesCS5D02G114600 , TraesCS5B02G107100 , TraesCS5B02G107100 , TraesCS5A02G102800 , TraesCS5A02G102800 , TraesCS5A02G102800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
2 Sobic.003G126300 OsRhmbd2 - Putative Rhomboid homologue, expressed -
3 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
4 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
5 Sobic.003G036800 WD domain, G-beta repeat domain containing protein, expressed K10260: FBXW7, F-box and WD-40 domain protein 7
6 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
7 Sobic.002G427050 - -
8 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
9 Sobic.002G427000 - -
10 Sobic.007G077400 dehydrogenase, putative, expressed K07512: MECR, mitochondrial enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase
11 Sobic.001G101100 mitochondrial carrier protein, putative, expressed K15115: SLC25A32, solute carrier family 25 (mitochondrial folate transporter), member 32
12 Sobic.001G180900 secretory carrier-associated membrane protein 4, putative, expressed -
13 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
14 Sobic.009G207000 protein of unknown function DUF502 domain containing protein, expressed -
15 Sobic.002G424000 transcription factor, putative, expressed K14431: transcription factor TGA
16 Sobic.006G249700 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
17 Sobic.006G033200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
18 Sobic.001G474700 expressed protein -
19 Sobic.004G261600 expressed protein -
20 Sobic.009G042700 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -


Gene co-expression network
sample Sobic008G110600 Sobic008G110600 Sobic006G034000 Sobic006G034000 Sobic008G110600--Sobic006G034000 Sobic003G126300 Sobic003G126300 Sobic008G110600--Sobic003G126300 Sobic010G130000 Sobic010G130000 Sobic008G110600--Sobic010G130000 Sobic004G178200 Sobic004G178200 Sobic008G110600--Sobic004G178200 Sobic003G036800 Sobic003G036800 Sobic008G110600--Sobic003G036800 Sobic001G091300 Sobic001G091300 Sobic008G110600--Sobic001G091300 Sobic002G427050 Sobic002G427050 Sobic008G110600--Sobic002G427050 Sobic008G093000 Sobic008G093000 Sobic008G110600--Sobic008G093000 Sobic002G427000 Sobic002G427000 Sobic008G110600--Sobic002G427000 Sobic003G312200 Sobic003G312200 Sobic006G034000--Sobic003G312200 Sobic001G323000 Sobic001G323000 Sobic006G034000--Sobic001G323000 Sobic003G436300 Sobic003G436300 Sobic006G034000--Sobic003G436300 Sobic006G148200 Sobic006G148200 Sobic006G034000--Sobic006G148200 Sobic001G180900 Sobic001G180900 Sobic006G034000--Sobic001G180900 Sobic006G034000--Sobic010G130000 Sobic006G034000--Sobic001G091300 Sobic006G034000--Sobic008G110600 Sobic009G228700 Sobic009G228700 Sobic006G034000--Sobic009G228700 Sobic004G228800 Sobic004G228800 Sobic003G126300--Sobic004G228800 Sobic009G079300 Sobic009G079300 Sobic003G126300--Sobic009G079300 Sobic004G004200 Sobic004G004200 Sobic003G126300--Sobic004G004200 Sobic003G126300--Sobic008G110600 Sobic004G261600 Sobic004G261600 Sobic003G126300--Sobic004G261600 Sobic003G126300--Sobic006G034000 Sobic003G272400 Sobic003G272400 Sobic003G126300--Sobic003G272400 Sobic007G056600 Sobic007G056600 Sobic003G126300--Sobic007G056600 Sobic006G033200 Sobic006G033200 Sobic003G126300--Sobic006G033200 Sobic010G130000--Sobic006G033200 Sobic010G278200 Sobic010G278200 Sobic010G130000--Sobic010G278200 Sobic009G138100 Sobic009G138100 Sobic010G130000--Sobic009G138100 Sobic010G130000--Sobic006G034000 Sobic010G130000--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic010G130000--Sobic001G124200 Sobic001G390800 Sobic001G390800 Sobic010G130000--Sobic001G390800 Sobic001G085100 Sobic001G085100 Sobic010G130000--Sobic001G085100 Sobic008G124900 Sobic008G124900 Sobic010G130000--Sobic008G124900 Sobic007G132100 Sobic007G132100 Sobic004G178200--Sobic007G132100 Sobic007G218000 Sobic007G218000 Sobic004G178200--Sobic007G218000 Sobic006G136400 Sobic006G136400 Sobic004G178200--Sobic006G136400 Sobic006G131000 Sobic006G131000 Sobic004G178200--Sobic006G131000 Sobic006G126100 Sobic006G126100 Sobic004G178200--Sobic006G126100 Sobic006G012500 Sobic006G012500 Sobic004G178200--Sobic006G012500 Sobic010G116600 Sobic010G116600 Sobic004G178200--Sobic010G116600 Sobic002G303600 Sobic002G303600 Sobic004G178200--Sobic002G303600 Sobic004G039600 Sobic004G039600 Sobic004G178200--Sobic004G039600 Sobic001G281100 Sobic001G281100 Sobic003G036800--Sobic001G281100 Sobic004G269200 Sobic004G269200 Sobic003G036800--Sobic004G269200 Sobic003G036800--Sobic004G261600 Sobic004G002400 Sobic004G002400 Sobic003G036800--Sobic004G002400 Sobic003G036800--Sobic004G004200 Sobic007G060201 Sobic007G060201 Sobic003G036800--Sobic007G060201 Sobic003G195500 Sobic003G195500 Sobic003G036800--Sobic003G195500 Sobic010G072800 Sobic010G072800 Sobic003G036800--Sobic010G072800 Sobic001G251200 Sobic001G251200 Sobic003G036800--Sobic001G251200 Sobic001G091300--Sobic009G228700 Sobic001G091300--Sobic003G312200 Sobic004G275700 Sobic004G275700 Sobic001G091300--Sobic004G275700 Sobic004G066200 Sobic004G066200 Sobic001G091300--Sobic004G066200 Sobic001G091300--Sobic001G085100 Sobic001G512300 Sobic001G512300 Sobic001G091300--Sobic001G512300 Sobic001G261436 Sobic001G261436 Sobic001G091300--Sobic001G261436 Sobic001G199100 Sobic001G199100 Sobic001G091300--Sobic001G199100 Sobic001G091300--Sobic002G303600 Sobic009G010600 Sobic009G010600 Sobic002G427050--Sobic009G010600 Sobic002G340100 Sobic002G340100 Sobic002G427050--Sobic002G340100 Sobic001G050200 Sobic001G050200 Sobic002G427050--Sobic001G050200 Sobic002G427050--Sobic001G390800 Sobic002G315200 Sobic002G315200 Sobic002G427050--Sobic002G315200 Sobic002G427050--Sobic007G060201 Sobic001G107600 Sobic001G107600 Sobic002G427050--Sobic001G107600 Sobic001G137100 Sobic001G137100 Sobic002G427050--Sobic001G137100 Sobic004G091100 Sobic004G091100 Sobic002G427050--Sobic004G091100 Sobic008G093000--Sobic001G199100 Sobic010G064600 Sobic010G064600 Sobic008G093000--Sobic010G064600 Sobic001G301700 Sobic001G301700 Sobic008G093000--Sobic001G301700 Sobic008G093000--Sobic003G312200 Sobic008G093000--Sobic004G275700 Sobic010G229400 Sobic010G229400 Sobic008G093000--Sobic010G229400 Sobic009G207000 Sobic009G207000 Sobic008G093000--Sobic009G207000 Sobic003G087000 Sobic003G087000 Sobic008G093000--Sobic003G087000 Sobic002G244100 Sobic002G244100 Sobic008G093000--Sobic002G244100 Sobic002G427000--Sobic002G427050 Sobic002G427000--Sobic008G110600 Sobic005G182000 Sobic005G182000 Sobic002G427000--Sobic005G182000 Sobic006G258800 Sobic006G258800 Sobic002G427000--Sobic006G258800 Sobic002G427000--Sobic003G126300 Sobic002G427000--Sobic004G004200 Sobic001G440600 Sobic001G440600 Sobic002G427000--Sobic001G440600 Sobic001G101100 Sobic001G101100 Sobic002G427000--Sobic001G101100 Sobic002G427000--Sobic009G079300
Octagon: transcription factors


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