Gene annotation
Transcriptome id Sobic.001G180900.1
Synonym Sb01g015740
Functional annotation secretory carrier-associated membrane protein 4, putative, expressed
UniProt C5WU79
Pfam PF04144
Panther DB PTHR10687 PTHR10687:SF24
NCBI CDD KOG3088; Secretory carrier membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0015031protein transport


Orthologs (automatic annotation)
TAIR AT1G61250 : secretory carrier 3
RAP-DB (Rice) LOC_Os03g38590.1 : secretory carrier-associated membrane protein 4, putative, expressed
MaizeGDB (Corn) Zm00025a017359 , Zm00025a007110
Brachypodium KQK14332 , KQK14331
Barley -
Wheat -
Populus PNT11783 , PNT11782


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cDNA sequences
Sobic.001G180900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
2 Sobic.004G234900 membrane-anchored ubiquitin-fold protein, putative, expressed -
3 Sobic.002G378800 GRAM domain containing protein, expressed -
4 Sobic.009G079300 receptor protein kinase-like, putative, expressed -
5 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
6 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
7 Sobic.006G225600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
8 Sobic.008G110600 expressed protein -
9 Sobic.003G126300 OsRhmbd2 - Putative Rhomboid homologue, expressed -
10 Sobic.002G172900 OBP32pep, putative, expressed -
11 Sobic.010G174500 protein kinase family protein, putative, expressed -
12 Sobic.007G125900 protein kinase domain containing protein, expressed -
13 Sobic.002G424000 transcription factor, putative, expressed K14431: transcription factor TGA
14 Sobic.004G237600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
15 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
16 Sobic.009G000200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipid-transporting ATPase, putative, expressed K01530: phospholipid-translocating ATPase
17 Sobic.001G516100 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
18 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
19 Sobic.003G413500 expressed protein -
20 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G180900 Sobic001G180900 Sobic006G034000 Sobic006G034000 Sobic001G180900--Sobic006G034000 Sobic004G234900 Sobic004G234900 Sobic001G180900--Sobic004G234900 Sobic002G378800 Sobic002G378800 Sobic001G180900--Sobic002G378800 Sobic009G079300 Sobic009G079300 Sobic001G180900--Sobic009G079300 Sobic009G126900 Sobic009G126900 Sobic001G180900--Sobic009G126900 Sobic004G274400 Sobic004G274400 Sobic001G180900--Sobic004G274400 Sobic006G225600 Sobic006G225600 Sobic001G180900--Sobic006G225600 Sobic008G110600 Sobic008G110600 Sobic001G180900--Sobic008G110600 Sobic003G126300 Sobic003G126300 Sobic001G180900--Sobic003G126300 Sobic003G312200 Sobic003G312200 Sobic006G034000--Sobic003G312200 Sobic001G323000 Sobic001G323000 Sobic006G034000--Sobic001G323000 Sobic003G436300 Sobic003G436300 Sobic006G034000--Sobic003G436300 Sobic006G148200 Sobic006G148200 Sobic006G034000--Sobic006G148200 Sobic006G034000--Sobic001G180900 Sobic010G130000 Sobic010G130000 Sobic006G034000--Sobic010G130000 Sobic001G091300 Sobic001G091300 Sobic006G034000--Sobic001G091300 Sobic006G034000--Sobic008G110600 Sobic009G228700 Sobic009G228700 Sobic006G034000--Sobic009G228700 Sobic001G098200 Sobic001G098200 Sobic004G234900--Sobic001G098200 Sobic004G234900--Sobic006G225600 Sobic002G122700 Sobic002G122700 Sobic004G234900--Sobic002G122700 Sobic001G162100 Sobic001G162100 Sobic004G234900--Sobic001G162100 Sobic002G251700 Sobic002G251700 Sobic004G234900--Sobic002G251700 Sobic010G174500 Sobic010G174500 Sobic004G234900--Sobic010G174500 Sobic006G254800 Sobic006G254800 Sobic004G234900--Sobic006G254800 Sobic004G234900--Sobic001G180900 Sobic010G000900 Sobic010G000900 Sobic004G234900--Sobic010G000900 Sobic002G378800--Sobic001G180900 Sobic001G057800 Sobic001G057800 Sobic002G378800--Sobic001G057800 Sobic006G114800 Sobic006G114800 Sobic002G378800--Sobic006G114800 Sobic002G378800--Sobic001G323000 Sobic006G217700 Sobic006G217700 Sobic002G378800--Sobic006G217700 Sobic008G090600 Sobic008G090600 Sobic002G378800--Sobic008G090600 Sobic004G102400 Sobic004G102400 Sobic002G378800--Sobic004G102400 Sobic002G378800--Sobic006G034000 Sobic002G378800--Sobic009G126900 Sobic009G000200 Sobic009G000200 Sobic009G079300--Sobic009G000200 Sobic004G236550 Sobic004G236550 Sobic009G079300--Sobic004G236550 Sobic009G079300--Sobic003G126300 Sobic003G316300 Sobic003G316300 Sobic009G079300--Sobic003G316300 Sobic007G025800 Sobic007G025800 Sobic009G079300--Sobic007G025800 Sobic009G079300--Sobic001G180900 Sobic003G272400 Sobic003G272400 Sobic009G079300--Sobic003G272400 Sobic009G136100 Sobic009G136100 Sobic009G079300--Sobic009G136100 Sobic003G367300 Sobic003G367300 Sobic009G079300--Sobic003G367300 Sobic010G043400 Sobic010G043400 Sobic009G126900--Sobic010G043400 Sobic002G270500 Sobic002G270500 Sobic009G126900--Sobic002G270500 Sobic002G009700 Sobic002G009700 Sobic009G126900--Sobic002G009700 Sobic006G271200 Sobic006G271200 Sobic009G126900--Sobic006G271200 Sobic001G003000 Sobic001G003000 Sobic009G126900--Sobic001G003000 Sobic004G124200 Sobic004G124200 Sobic009G126900--Sobic004G124200 Sobic003G005600 Sobic003G005600 Sobic009G126900--Sobic003G005600 Sobic003G329400 Sobic003G329400 Sobic009G126900--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic009G126900--Sobic004G101900 Sobic004G274400--Sobic006G148200 Sobic004G274400--Sobic001G323000 Sobic004G274400--Sobic006G225600 Sobic003G002400 Sobic003G002400 Sobic004G274400--Sobic003G002400 Sobic009G219000 Sobic009G219000 Sobic004G274400--Sobic009G219000 Sobic002G131900 Sobic002G131900 Sobic004G274400--Sobic002G131900 Sobic004G274400--Sobic003G312200 Sobic001G206900 Sobic001G206900 Sobic004G274400--Sobic001G206900 Sobic003G007500 Sobic003G007500 Sobic004G274400--Sobic003G007500 Sobic006G225600--Sobic004G234900 Sobic006G225600--Sobic002G251700 Sobic006G225600--Sobic001G162100 Sobic006G225600--Sobic001G098200 Sobic003G295400 Sobic003G295400 Sobic006G225600--Sobic003G295400 Sobic006G225600--Sobic002G122700 Sobic006G225600--Sobic004G274400 Sobic001G051200 Sobic001G051200 Sobic006G225600--Sobic001G051200 Sobic001G434900 Sobic001G434900 Sobic006G225600--Sobic001G434900 Sobic008G110600--Sobic006G034000 Sobic008G110600--Sobic003G126300 Sobic008G110600--Sobic010G130000 Sobic004G178200 Sobic004G178200 Sobic008G110600--Sobic004G178200 Sobic003G036800 Sobic003G036800 Sobic008G110600--Sobic003G036800 Sobic008G110600--Sobic001G091300 Sobic002G427050 Sobic002G427050 Sobic008G110600--Sobic002G427050 Sobic008G093000 Sobic008G093000 Sobic008G110600--Sobic008G093000 Sobic002G427000 Sobic002G427000 Sobic008G110600--Sobic002G427000 Sobic004G228800 Sobic004G228800 Sobic003G126300--Sobic004G228800 Sobic003G126300--Sobic009G079300 Sobic004G004200 Sobic004G004200 Sobic003G126300--Sobic004G004200 Sobic003G126300--Sobic008G110600 Sobic004G261600 Sobic004G261600 Sobic003G126300--Sobic004G261600 Sobic003G126300--Sobic006G034000 Sobic003G126300--Sobic003G272400 Sobic007G056600 Sobic007G056600 Sobic003G126300--Sobic007G056600 Sobic006G033200 Sobic006G033200 Sobic003G126300--Sobic006G033200
Octagon: transcription factors


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