Gene annotation
Transcriptome id Sobic.002G378800.3
Synonym GEM, Sb02g039570
Functional annotation GRAM domain containing protein, expressed
UniProt C5X2G7
Pfam PF02893
Panther DB PTHR31969 PTHR31969:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G22475 : GRAM domain family protein
RAP-DB (Rice) LOC_Os07g42890.1 : GRAM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a015234
Brachypodium KQK15210
Barley HORVU2Hr1G030150.11 , HORVU2Hr1G030150.10 , HORVU2Hr1G030150.12
Wheat TraesCS2B02G190400 , TraesCS2B02G190400 , TraesCS2A02G164600 , TraesCS2D02G171500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G180900 secretory carrier-associated membrane protein 4, putative, expressed -
2 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
3 Sobic.006G114800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07877: Ras-related protein Rab-2A
4 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
5 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
6 Sobic.008G090600 expressed protein -
7 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
8 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
9 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
10 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
11 Sobic.003G321300 disease resistance protein RPS2, putative, expressed K13459: disease resistance protein RPS2
12 Sobic.002G172900 OBP32pep, putative, expressed -
13 Sobic.001G117300 expressed protein -
14 Sobic.001G516100 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
15 Sobic.004G234900 membrane-anchored ubiquitin-fold protein, putative, expressed -
16 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
17 Sobic.006G249700 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
18 Sobic.007G148700 exo70 exocyst complex subunit, putative, expressed -
19 Sobic.006G194500 expressed protein -
20 Sobic.001G074200 LRR receptor-like protein kinase, putative, expressed -


Gene co-expression network
sample Sobic002G378800 Sobic002G378800 Sobic001G180900 Sobic001G180900 Sobic002G378800--Sobic001G180900 Sobic001G057800 Sobic001G057800 Sobic002G378800--Sobic001G057800 Sobic006G114800 Sobic006G114800 Sobic002G378800--Sobic006G114800 Sobic001G323000 Sobic001G323000 Sobic002G378800--Sobic001G323000 Sobic006G217700 Sobic006G217700 Sobic002G378800--Sobic006G217700 Sobic008G090600 Sobic008G090600 Sobic002G378800--Sobic008G090600 Sobic004G102400 Sobic004G102400 Sobic002G378800--Sobic004G102400 Sobic006G034000 Sobic006G034000 Sobic002G378800--Sobic006G034000 Sobic009G126900 Sobic009G126900 Sobic002G378800--Sobic009G126900 Sobic001G180900--Sobic006G034000 Sobic004G234900 Sobic004G234900 Sobic001G180900--Sobic004G234900 Sobic001G180900--Sobic002G378800 Sobic009G079300 Sobic009G079300 Sobic001G180900--Sobic009G079300 Sobic001G180900--Sobic009G126900 Sobic004G274400 Sobic004G274400 Sobic001G180900--Sobic004G274400 Sobic006G225600 Sobic006G225600 Sobic001G180900--Sobic006G225600 Sobic008G110600 Sobic008G110600 Sobic001G180900--Sobic008G110600 Sobic003G126300 Sobic003G126300 Sobic001G180900--Sobic003G126300 Sobic001G057800--Sobic001G323000 Sobic002G400000 Sobic002G400000 Sobic001G057800--Sobic002G400000 Sobic002G352700 Sobic002G352700 Sobic001G057800--Sobic002G352700 Sobic002G385900 Sobic002G385900 Sobic001G057800--Sobic002G385900 Sobic001G158500 Sobic001G158500 Sobic001G057800--Sobic001G158500 Sobic004G130900 Sobic004G130900 Sobic001G057800--Sobic004G130900 Sobic010G000900 Sobic010G000900 Sobic001G057800--Sobic010G000900 Sobic010G168600 Sobic010G168600 Sobic001G057800--Sobic010G168600 Sobic009G207000 Sobic009G207000 Sobic001G057800--Sobic009G207000 Sobic006G114800--Sobic002G378800 Sobic006G114800--Sobic004G102400 Sobic005G150800 Sobic005G150800 Sobic006G114800--Sobic005G150800 Sobic009G004200 Sobic009G004200 Sobic006G114800--Sobic009G004200 Sobic010G016400 Sobic010G016400 Sobic006G114800--Sobic010G016400 Sobic009G167700 Sobic009G167700 Sobic006G114800--Sobic009G167700 Sobic003G338400 Sobic003G338400 Sobic006G114800--Sobic003G338400 Sobic001G393800 Sobic001G393800 Sobic006G114800--Sobic001G393800 Sobic001G023200 Sobic001G023200 Sobic006G114800--Sobic001G023200 Sobic001G206900 Sobic001G206900 Sobic001G323000--Sobic001G206900 Sobic001G323000--Sobic006G034000 Sobic009G228700 Sobic009G228700 Sobic001G323000--Sobic009G228700 Sobic001G323000--Sobic001G057800 Sobic003G312200 Sobic003G312200 Sobic001G323000--Sobic003G312200 Sobic006G148200 Sobic006G148200 Sobic001G323000--Sobic006G148200 Sobic001G323000--Sobic009G207000 Sobic001G323000--Sobic010G000900 Sobic001G085100 Sobic001G085100 Sobic001G323000--Sobic001G085100 Sobic010G017000 Sobic010G017000 Sobic006G217700--Sobic010G017000 Sobic009G238800 Sobic009G238800 Sobic006G217700--Sobic009G238800 Sobic006G217700--Sobic001G323000 Sobic006G217700--Sobic010G016400 Sobic004G054300 Sobic004G054300 Sobic006G217700--Sobic004G054300 Sobic004G132300 Sobic004G132300 Sobic006G217700--Sobic004G132300 Sobic006G217700--Sobic001G057800 Sobic001G033500 Sobic001G033500 Sobic006G217700--Sobic001G033500 Sobic007G148800 Sobic007G148800 Sobic006G217700--Sobic007G148800 Sobic008G090600--Sobic002G378800 Sobic008G090600--Sobic006G034000 Sobic003G436300 Sobic003G436300 Sobic008G090600--Sobic003G436300 Sobic005G091600 Sobic005G091600 Sobic008G090600--Sobic005G091600 Sobic002G301800 Sobic002G301800 Sobic008G090600--Sobic002G301800 Sobic008G090600--Sobic001G180900 Sobic003G116900 Sobic003G116900 Sobic008G090600--Sobic003G116900 Sobic001G363300 Sobic001G363300 Sobic008G090600--Sobic001G363300 Sobic003G321300 Sobic003G321300 Sobic008G090600--Sobic003G321300 Sobic004G102400--Sobic003G338400 Sobic004G102400--Sobic001G158500 Sobic001G003000 Sobic001G003000 Sobic004G102400--Sobic001G003000 Sobic004G102400--Sobic009G167700 Sobic004G102400--Sobic005G150800 Sobic006G271200 Sobic006G271200 Sobic004G102400--Sobic006G271200 Sobic001G089800 Sobic001G089800 Sobic004G102400--Sobic001G089800 Sobic004G102400--Sobic001G057800 Sobic004G042300 Sobic004G042300 Sobic004G102400--Sobic004G042300 Sobic006G034000--Sobic003G312200 Sobic006G034000--Sobic001G323000 Sobic006G034000--Sobic003G436300 Sobic006G034000--Sobic006G148200 Sobic006G034000--Sobic001G180900 Sobic010G130000 Sobic010G130000 Sobic006G034000--Sobic010G130000 Sobic001G091300 Sobic001G091300 Sobic006G034000--Sobic001G091300 Sobic006G034000--Sobic008G110600 Sobic006G034000--Sobic009G228700 Sobic010G043400 Sobic010G043400 Sobic009G126900--Sobic010G043400 Sobic002G270500 Sobic002G270500 Sobic009G126900--Sobic002G270500 Sobic002G009700 Sobic002G009700 Sobic009G126900--Sobic002G009700 Sobic009G126900--Sobic006G271200 Sobic009G126900--Sobic001G003000 Sobic004G124200 Sobic004G124200 Sobic009G126900--Sobic004G124200 Sobic003G005600 Sobic003G005600 Sobic009G126900--Sobic003G005600 Sobic003G329400 Sobic003G329400 Sobic009G126900--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic009G126900--Sobic004G101900
Octagon: transcription factors


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