Gene annotation
Transcriptome id Sobic.006G114800.1
Synonym Sb06g019620, ATRAB-B1B, RABB1C, AT-RAB2, ATRABB1C, RAB2A, ATRAB2A, RAB-B1B
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
ras-related protein, putative, expressed
UniProt C5YAB0
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF545
NCBI CDD KOG0098; GTPase Rab2, small G protein superfamily
KEGG Orthology K07877; Ras-related protein Rab-2A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT4G17170 : RAB GTPase homolog B1C
RAP-DB (Rice) LOC_Os02g37420.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a011048 , Zm00025a021369 , Zm00025a031776 , Zm00025a056268
Brachypodium KQK00079 , KQJ83093
Barley HORVU6Hr1G051470.4 , HORVU6Hr1G051470.3 , HORVU6Hr1G051470.1 , HORVU6Hr1G051470.6 , HORVU6Hr1G051470.2 , HORVU5Hr1G071600.1 , HORVU5Hr1G071600.3 , HORVU5Hr1G071600.2 , HORVU5Hr1G071600.4 , HORVU6Hr1G051470.5
Wheat TraesCS2D02G331300 , TraesCS6D02G188500 , TraesCS5D02G264100 , TraesCS5D02G264100 , TraesCS3D02G495900 , TraesCS2B02G350600 , TraesCS5B02G255300 , TraesCS6B02G230400 , TraesCS6B02G230400 , TraesCS5A02G256000 , TraesCS3A02G489900 , TraesCS2A02G331600 , TraesCS6A02G207100
Populus PNS97093 , PNS97094


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cDNA sequences
Sobic.006G114800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G378800 GRAM domain containing protein, expressed -
2 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
3 Sobic.005G150800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@yippee zinc-binding protein, putative, expressed -
4 Sobic.009G004200 MAC/Perforin domain containing protein, putative, expressed -
5 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
6 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
7 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
8 Sobic.001G393800 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
9 Sobic.001G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed K03522: fixB, electron transfer flavoprotein alpha subunit
10 Sobic.001G057800 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
11 Sobic.008G107500 WRKY96, expressed -
12 Sobic.007G125900 protein kinase domain containing protein, expressed -
13 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
14 Sobic.001G304500 scarecrow, putative, expressed -
15 Sobic.004G301400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K08331: autophagy-related protein 13
16 Sobic.001G010400 snRK1-interacting protein 1, putative, expressed -
17 Sobic.009G127000 leucine-rich repeat family protein, putative, expressed -
18 Sobic.007G148700 exo70 exocyst complex subunit, putative, expressed -
19 Sobic.001G298300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@autophagy-related protein 3, putative, expressed K08343: ubiquitin-like-conjugating enzyme ATG3
20 Sobic.001G180900 secretory carrier-associated membrane protein 4, putative, expressed -


Gene co-expression network
sample Sobic006G114800 Sobic006G114800 Sobic002G378800 Sobic002G378800 Sobic006G114800--Sobic002G378800 Sobic004G102400 Sobic004G102400 Sobic006G114800--Sobic004G102400 Sobic005G150800 Sobic005G150800 Sobic006G114800--Sobic005G150800 Sobic009G004200 Sobic009G004200 Sobic006G114800--Sobic009G004200 Sobic010G016400 Sobic010G016400 Sobic006G114800--Sobic010G016400 Sobic009G167700 Sobic009G167700 Sobic006G114800--Sobic009G167700 Sobic003G338400 Sobic003G338400 Sobic006G114800--Sobic003G338400 Sobic001G393800 Sobic001G393800 Sobic006G114800--Sobic001G393800 Sobic001G023200 Sobic001G023200 Sobic006G114800--Sobic001G023200 Sobic001G180900 Sobic001G180900 Sobic002G378800--Sobic001G180900 Sobic001G057800 Sobic001G057800 Sobic002G378800--Sobic001G057800 Sobic002G378800--Sobic006G114800 Sobic001G323000 Sobic001G323000 Sobic002G378800--Sobic001G323000 Sobic006G217700 Sobic006G217700 Sobic002G378800--Sobic006G217700 Sobic008G090600 Sobic008G090600 Sobic002G378800--Sobic008G090600 Sobic002G378800--Sobic004G102400 Sobic006G034000 Sobic006G034000 Sobic002G378800--Sobic006G034000 Sobic009G126900 Sobic009G126900 Sobic002G378800--Sobic009G126900 Sobic004G102400--Sobic003G338400 Sobic001G158500 Sobic001G158500 Sobic004G102400--Sobic001G158500 Sobic001G003000 Sobic001G003000 Sobic004G102400--Sobic001G003000 Sobic004G102400--Sobic009G167700 Sobic004G102400--Sobic005G150800 Sobic006G271200 Sobic006G271200 Sobic004G102400--Sobic006G271200 Sobic001G089800 Sobic001G089800 Sobic004G102400--Sobic001G089800 Sobic004G102400--Sobic001G057800 Sobic004G042300 Sobic004G042300 Sobic004G102400--Sobic004G042300 Sobic005G150800--Sobic004G102400 Sobic005G150800--Sobic001G393800 Sobic008G107500 Sobic008G107500 Sobic005G150800--Sobic008G107500 Sobic003G009100 Sobic003G009100 Sobic005G150800--Sobic003G009100 Sobic005G150800--Sobic009G167700 Sobic005G150800--Sobic001G057800 Sobic003G354400 Sobic003G354400 Sobic005G150800--Sobic003G354400 Sobic005G150800--Sobic006G114800 Sobic004G167400 Sobic004G167400 Sobic005G150800--Sobic004G167400 Sobic009G004200--Sobic006G114800 Sobic001G151800 Sobic001G151800 Sobic009G004200--Sobic001G151800 Sobic009G236200 Sobic009G236200 Sobic009G004200--Sobic009G236200 Sobic006G119200 Sobic006G119200 Sobic009G004200--Sobic006G119200 Sobic009G004200--Sobic009G167700 Sobic004G347300 Sobic004G347300 Sobic009G004200--Sobic004G347300 Sobic009G004200--Sobic010G016400 Sobic006G140000 Sobic006G140000 Sobic009G004200--Sobic006G140000 Sobic001G386400 Sobic001G386400 Sobic009G004200--Sobic001G386400 Sobic005G139400 Sobic005G139400 Sobic010G016400--Sobic005G139400 Sobic010G016400--Sobic009G167700 Sobic010G016400--Sobic004G347300 Sobic010G016400--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic010G016400--Sobic007G148800 Sobic010G016400--Sobic006G217700 Sobic001G010400 Sobic001G010400 Sobic010G016400--Sobic001G010400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500 Sobic002G244100 Sobic002G244100 Sobic009G167700--Sobic002G244100 Sobic004G341200 Sobic004G341200 Sobic009G167700--Sobic004G341200 Sobic009G167700--Sobic004G102400 Sobic009G167700--Sobic001G386400 Sobic009G167700--Sobic010G016400 Sobic009G167700--Sobic001G089800 Sobic009G167700--Sobic003G354400 Sobic001G132000 Sobic001G132000 Sobic009G167700--Sobic001G132000 Sobic009G167700--Sobic006G119200 Sobic003G338400--Sobic004G102400 Sobic003G348400 Sobic003G348400 Sobic003G338400--Sobic003G348400 Sobic003G338400--Sobic004G341200 Sobic003G338400--Sobic009G167700 Sobic003G338400--Sobic010G016400 Sobic003G338400--Sobic001G003000 Sobic003G338400--Sobic001G158500 Sobic003G338400--Sobic006G140000 Sobic003G338400--Sobic001G089800 Sobic001G393800--Sobic008G107500 Sobic001G393800--Sobic005G150800 Sobic001G393800--Sobic001G010400 Sobic003G333400 Sobic003G333400 Sobic001G393800--Sobic003G333400 Sobic001G393800--Sobic004G167400 Sobic001G393800--Sobic001G057800 Sobic002G175500 Sobic002G175500 Sobic001G393800--Sobic002G175500 Sobic009G099500 Sobic009G099500 Sobic001G393800--Sobic009G099500 Sobic001G393800--Sobic001G023200 Sobic001G023200--Sobic003G009100 Sobic002G258100 Sobic002G258100 Sobic001G023200--Sobic002G258100 Sobic001G023200--Sobic001G010400 Sobic001G023200--Sobic004G347300 Sobic001G023200--Sobic001G393800 Sobic004G203100 Sobic004G203100 Sobic001G023200--Sobic004G203100 Sobic001G023200--Sobic010G016400 Sobic002G113300 Sobic002G113300 Sobic001G023200--Sobic002G113300 Sobic007G106900 Sobic007G106900 Sobic001G023200--Sobic007G106900
Octagon: transcription factors


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