Gene annotation
Transcriptome id Sobic.001G304500.1
Synonym ATHAM3, Sb01g029650, HAM3
Functional annotation scarecrow, putative, expressed
UniProt C5WSJ8
Pfam PF03514
Panther DB PTHR31636 PTHR31636:SF52
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G00150 : GRAS family transcription factor
RAP-DB (Rice) LOC_Os10g40390.1 : scarecrow, putative, expressed
MaizeGDB (Corn) Zm00025a003287
Brachypodium KQJ97733 , PNT78371
Barley HORVU4Hr1G087700.10 , HORVU4Hr1G087700.4 , HORVU4Hr1G087700.5 , HORVU4Hr1G087700.6 , HORVU4Hr1G087700.7 , HORVU4Hr1G087700.2 , HORVU4Hr1G087700.8 , HORVU4Hr1G087700.9 , HORVU1Hr1G053510.1 , HORVU1Hr1G053510.2
Wheat -
Populus -


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cDNA sequences
Sobic.001G304500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
2 Sobic.006G114800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@ras-related protein, putative, expressed K07877: Ras-related protein Rab-2A
3 Sobic.001G074200 LRR receptor-like protein kinase, putative, expressed -
4 Sobic.002G242500 Expressed in older stem(PubMedID : 28649278)@WRKY90, expressed K18835: WRKY transcription factor 2
5 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
6 Sobic.001G434900 serine palmitoyltransferase 1, putative, expressed K00654: serine palmitoyltransferase
7 Sobic.009G127000 leucine-rich repeat family protein, putative, expressed -
8 Sobic.004G102400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FYVE zinc finger domain containing protein, expressed -
9 Sobic.007G125900 protein kinase domain containing protein, expressed -
10 Sobic.007G148700 exo70 exocyst complex subunit, putative, expressed -
11 Sobic.002G294200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
12 Sobic.001G498500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@aminotransferase, putative, expressed K00831: serC, phosphoserine aminotransferase
13 Sobic.001G157200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
14 Sobic.003G338400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase NAK, putative, expressed -
15 Sobic.009G111600 expressed protein -
16 Sobic.004G183400 expressed protein -
17 Sobic.002G378800 GRAM domain containing protein, expressed -
18 Sobic.007G006600 expressed protein -
19 Sobic.001G330700 NAD dependent epimerase/dehydratase family protein, putative, expressed -
20 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1


Gene co-expression network
sample Sobic001G304500 Sobic001G304500 Sobic010G016400 Sobic010G016400 Sobic001G304500--Sobic010G016400 Sobic006G114800 Sobic006G114800 Sobic001G304500--Sobic006G114800 Sobic001G074200 Sobic001G074200 Sobic001G304500--Sobic001G074200 Sobic002G242500 Sobic002G242500 Sobic001G304500--Sobic002G242500 Sobic001G403700 Sobic001G403700 Sobic001G304500--Sobic001G403700 Sobic001G434900 Sobic001G434900 Sobic001G304500--Sobic001G434900 Sobic009G127000 Sobic009G127000 Sobic001G304500--Sobic009G127000 Sobic004G102400 Sobic004G102400 Sobic001G304500--Sobic004G102400 Sobic007G125900 Sobic007G125900 Sobic001G304500--Sobic007G125900 Sobic005G139400 Sobic005G139400 Sobic010G016400--Sobic005G139400 Sobic009G167700 Sobic009G167700 Sobic010G016400--Sobic009G167700 Sobic004G347300 Sobic004G347300 Sobic010G016400--Sobic004G347300 Sobic006G119200 Sobic006G119200 Sobic010G016400--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic010G016400--Sobic007G148800 Sobic006G217700 Sobic006G217700 Sobic010G016400--Sobic006G217700 Sobic001G010400 Sobic001G010400 Sobic010G016400--Sobic001G010400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500 Sobic002G378800 Sobic002G378800 Sobic006G114800--Sobic002G378800 Sobic006G114800--Sobic004G102400 Sobic005G150800 Sobic005G150800 Sobic006G114800--Sobic005G150800 Sobic009G004200 Sobic009G004200 Sobic006G114800--Sobic009G004200 Sobic006G114800--Sobic010G016400 Sobic006G114800--Sobic009G167700 Sobic003G338400 Sobic003G338400 Sobic006G114800--Sobic003G338400 Sobic001G393800 Sobic001G393800 Sobic006G114800--Sobic001G393800 Sobic001G023200 Sobic001G023200 Sobic006G114800--Sobic001G023200 Sobic001G074200--Sobic009G127000 Sobic001G074200--Sobic007G125900 Sobic008G115500 Sobic008G115500 Sobic001G074200--Sobic008G115500 Sobic002G379866 Sobic002G379866 Sobic001G074200--Sobic002G379866 Sobic001G147200 Sobic001G147200 Sobic001G074200--Sobic001G147200 Sobic001G157200 Sobic001G157200 Sobic001G074200--Sobic001G157200 Sobic005G117400 Sobic005G117400 Sobic001G074200--Sobic005G117400 Sobic002G118600 Sobic002G118600 Sobic001G074200--Sobic002G118600 Sobic010G228000 Sobic010G228000 Sobic001G074200--Sobic010G228000 Sobic002G294200 Sobic002G294200 Sobic002G242500--Sobic002G294200 Sobic007G098400 Sobic007G098400 Sobic002G242500--Sobic007G098400 Sobic004G145200 Sobic004G145200 Sobic002G242500--Sobic004G145200 Sobic003G049300 Sobic003G049300 Sobic002G242500--Sobic003G049300 Sobic001G049200 Sobic001G049200 Sobic002G242500--Sobic001G049200 Sobic003G167500 Sobic003G167500 Sobic002G242500--Sobic003G167500 Sobic007G221100 Sobic007G221100 Sobic002G242500--Sobic007G221100 Sobic002G242500--Sobic001G403700 Sobic005G211400 Sobic005G211400 Sobic002G242500--Sobic005G211400 Sobic009G111600 Sobic009G111600 Sobic001G403700--Sobic009G111600 Sobic004G284500 Sobic004G284500 Sobic001G403700--Sobic004G284500 Sobic002G078400 Sobic002G078400 Sobic001G403700--Sobic002G078400 Sobic006G182100 Sobic006G182100 Sobic001G403700--Sobic006G182100 Sobic002G296300 Sobic002G296300 Sobic001G403700--Sobic002G296300 Sobic003G248600 Sobic003G248600 Sobic001G403700--Sobic003G248600 Sobic008G132800 Sobic008G132800 Sobic001G403700--Sobic008G132800 Sobic002G214900 Sobic002G214900 Sobic001G403700--Sobic002G214900 Sobic010G213400 Sobic010G213400 Sobic001G403700--Sobic010G213400 Sobic002G122700 Sobic002G122700 Sobic001G434900--Sobic002G122700 Sobic004G350300 Sobic004G350300 Sobic001G434900--Sobic004G350300 Sobic003G002400 Sobic003G002400 Sobic001G434900--Sobic003G002400 Sobic003G367300 Sobic003G367300 Sobic001G434900--Sobic003G367300 Sobic006G225600 Sobic006G225600 Sobic001G434900--Sobic006G225600 Sobic005G176000 Sobic005G176000 Sobic001G434900--Sobic005G176000 Sobic001G434900--Sobic003G248600 Sobic001G162100 Sobic001G162100 Sobic001G434900--Sobic001G162100 Sobic004G274400 Sobic004G274400 Sobic001G434900--Sobic004G274400 Sobic009G127000--Sobic001G074200 Sobic009G127000--Sobic004G145200 Sobic009G127000--Sobic010G228000 Sobic007G188100 Sobic007G188100 Sobic009G127000--Sobic007G188100 Sobic010G062800 Sobic010G062800 Sobic009G127000--Sobic010G062800 Sobic009G127000--Sobic001G403700 Sobic001G283500 Sobic001G283500 Sobic009G127000--Sobic001G283500 Sobic009G127000--Sobic007G125900 Sobic002G083266 Sobic002G083266 Sobic009G127000--Sobic002G083266 Sobic004G102400--Sobic003G338400 Sobic001G158500 Sobic001G158500 Sobic004G102400--Sobic001G158500 Sobic001G003000 Sobic001G003000 Sobic004G102400--Sobic001G003000 Sobic004G102400--Sobic009G167700 Sobic004G102400--Sobic005G150800 Sobic006G271200 Sobic006G271200 Sobic004G102400--Sobic006G271200 Sobic001G089800 Sobic001G089800 Sobic004G102400--Sobic001G089800 Sobic001G057800 Sobic001G057800 Sobic004G102400--Sobic001G057800 Sobic004G042300 Sobic004G042300 Sobic004G102400--Sobic004G042300 Sobic003G348400 Sobic003G348400 Sobic007G125900--Sobic003G348400 Sobic007G125900--Sobic005G117400 Sobic001G151800 Sobic001G151800 Sobic007G125900--Sobic001G151800 Sobic007G125900--Sobic001G074200 Sobic009G236200 Sobic009G236200 Sobic007G125900--Sobic009G236200 Sobic002G355200 Sobic002G355200 Sobic007G125900--Sobic002G355200 Sobic005G016800 Sobic005G016800 Sobic007G125900--Sobic005G016800 Sobic007G125900--Sobic004G102400 Sobic007G125900--Sobic009G127000
Octagon: transcription factors


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