Gene annotation
Transcriptome id Sobic.001G464500.1
Synonym Sb01g043590
Functional annotation CUE domain containing protein, expressed
UniProt C5WTS2
Pfam PF02845
Panther DB PTHR21494 PTHR21494:SF0
NCBI CDD KOG4501; Transcription coactivator complex, P100 component
KEGG Orthology K18667; activating signal cointegrator complex subunit 2
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G27752 : Ubiquitin system component Cue protein
RAP-DB (Rice) LOC_Os03g10750.1 : CUE domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001141
Brachypodium PNT77956 , KQK23029 , KQK23038
Barley HORVU4Hr1G069920.30 , HORVU4Hr1G069920.31 , HORVU4Hr1G069920.18 , HORVU4Hr1G069920.19 , HORVU4Hr1G069920.12 , HORVU4Hr1G069920.13 , HORVU4Hr1G069920.10 , HORVU4Hr1G069920.11 , HORVU4Hr1G069920.16 , HORVU4Hr1G069920.17 , HORVU4Hr1G069920.14 , HORVU4Hr1G069920.15 , HORVU4Hr1G069920.1 , HORVU4Hr1G069920.2 , HORVU4Hr1G069920.3 , HORVU4Hr1G069920.4 , HORVU4Hr1G069920.5 , HORVU4Hr1G069920.6 , HORVU4Hr1G069920.7 , HORVU4Hr1G069920.8 , HORVU4Hr1G069920.9 , HORVU4Hr1G069920.23 , HORVU4Hr1G069920.22 , HORVU4Hr1G069920.21 , HORVU4Hr1G069920.20 , HORVU4Hr1G069920.27 , HORVU4Hr1G069920.26 , HORVU4Hr1G069920.25 , HORVU4Hr1G069920.24 , HORVU4Hr1G069920.29 , HORVU4Hr1G069920.28
Wheat TraesCS4D02G257600 , TraesCS4D02G257600 , TraesCS4D02G257600 , TraesCS4A02G047100 , TraesCS4B02G257700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G271200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cysteine protease ATG4, putative, expressed K08342: cysteine protease ATG4
2 Sobic.005G059600 WD domain, G-beta repeat domain containing protein, expressed -
3 Sobic.003G436300 expressed protein -
4 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
5 Sobic.004G261600 expressed protein -
6 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
7 Sobic.006G237900 UBA/TS-N domain containing protein, expressed -
8 Sobic.004G004200 expressed protein -
9 Sobic.001G003000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
10 Sobic.010G004100 expressed protein -
11 Sobic.003G087000 expressed protein -
12 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
13 Sobic.010G072800 exportin-7-A, putative, expressed K18460: XPO7, exportin-7
14 Sobic.007G203300 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
15 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -
16 Sobic.003G126300 OsRhmbd2 - Putative Rhomboid homologue, expressed -
17 Sobic.010G020300 spastin, putative, expressed K13254: spastin
18 Sobic.007G186000 radical SAM enzyme, putative, expressed K01012: biotin synthase
19 Sobic.001G440800 myb/SANT domain protein, putative, expressed -
20 Sobic.002G270500 UBX domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G464500 Sobic001G464500 Sobic006G271200 Sobic006G271200 Sobic001G464500--Sobic006G271200 Sobic005G059600 Sobic005G059600 Sobic001G464500--Sobic005G059600 Sobic003G436300 Sobic003G436300 Sobic001G464500--Sobic003G436300 Sobic006G034000 Sobic006G034000 Sobic001G464500--Sobic006G034000 Sobic004G261600 Sobic004G261600 Sobic001G464500--Sobic004G261600 Sobic002G430000 Sobic002G430000 Sobic001G464500--Sobic002G430000 Sobic006G237900 Sobic006G237900 Sobic001G464500--Sobic006G237900 Sobic004G004200 Sobic004G004200 Sobic001G464500--Sobic004G004200 Sobic001G003000 Sobic001G003000 Sobic001G464500--Sobic001G003000 Sobic006G271200--Sobic001G003000 Sobic006G271200--Sobic006G237900 Sobic009G126900 Sobic009G126900 Sobic006G271200--Sobic009G126900 Sobic010G130200 Sobic010G130200 Sobic006G271200--Sobic010G130200 Sobic001G089800 Sobic001G089800 Sobic006G271200--Sobic001G089800 Sobic010G043400 Sobic010G043400 Sobic006G271200--Sobic010G043400 Sobic004G351300 Sobic004G351300 Sobic006G271200--Sobic004G351300 Sobic001G436900 Sobic001G436900 Sobic006G271200--Sobic001G436900 Sobic010G072800 Sobic010G072800 Sobic006G271200--Sobic010G072800 Sobic005G059600--Sobic004G351300 Sobic005G059600--Sobic006G271200 Sobic002G270500 Sobic002G270500 Sobic005G059600--Sobic002G270500 Sobic005G059600--Sobic006G237900 Sobic004G177300 Sobic004G177300 Sobic005G059600--Sobic004G177300 Sobic010G261600 Sobic010G261600 Sobic005G059600--Sobic010G261600 Sobic004G228800 Sobic004G228800 Sobic005G059600--Sobic004G228800 Sobic001G273700 Sobic001G273700 Sobic005G059600--Sobic001G273700 Sobic004G016000 Sobic004G016000 Sobic005G059600--Sobic004G016000 Sobic003G436300--Sobic006G034000 Sobic001G085100 Sobic001G085100 Sobic003G436300--Sobic001G085100 Sobic010G020300 Sobic010G020300 Sobic003G436300--Sobic010G020300 Sobic001G057800 Sobic001G057800 Sobic003G436300--Sobic001G057800 Sobic003G116900 Sobic003G116900 Sobic003G436300--Sobic003G116900 Sobic003G312200 Sobic003G312200 Sobic003G436300--Sobic003G312200 Sobic001G323000 Sobic001G323000 Sobic003G436300--Sobic001G323000 Sobic004G348900 Sobic004G348900 Sobic003G436300--Sobic004G348900 Sobic001G296900 Sobic001G296900 Sobic003G436300--Sobic001G296900 Sobic006G034000--Sobic003G312200 Sobic006G034000--Sobic001G323000 Sobic006G034000--Sobic003G436300 Sobic006G148200 Sobic006G148200 Sobic006G034000--Sobic006G148200 Sobic001G180900 Sobic001G180900 Sobic006G034000--Sobic001G180900 Sobic010G130000 Sobic010G130000 Sobic006G034000--Sobic010G130000 Sobic001G091300 Sobic001G091300 Sobic006G034000--Sobic001G091300 Sobic008G110600 Sobic008G110600 Sobic006G034000--Sobic008G110600 Sobic009G228700 Sobic009G228700 Sobic006G034000--Sobic009G228700 Sobic004G261600--Sobic004G228800 Sobic006G126100 Sobic006G126100 Sobic004G261600--Sobic006G126100 Sobic003G209200 Sobic003G209200 Sobic004G261600--Sobic003G209200 Sobic003G104000 Sobic003G104000 Sobic004G261600--Sobic003G104000 Sobic007G005500 Sobic007G005500 Sobic004G261600--Sobic007G005500 Sobic001G251200 Sobic001G251200 Sobic004G261600--Sobic001G251200 Sobic001G415300 Sobic001G415300 Sobic004G261600--Sobic001G415300 Sobic004G004300 Sobic004G004300 Sobic004G261600--Sobic004G004300 Sobic008G099800 Sobic008G099800 Sobic004G261600--Sobic008G099800 Sobic001G207400 Sobic001G207400 Sobic002G430000--Sobic001G207400 Sobic001G117200 Sobic001G117200 Sobic002G430000--Sobic001G117200 Sobic004G355000 Sobic004G355000 Sobic002G430000--Sobic004G355000 Sobic008G098900 Sobic008G098900 Sobic002G430000--Sobic008G098900 Sobic001G016700 Sobic001G016700 Sobic002G430000--Sobic001G016700 Sobic004G113400 Sobic004G113400 Sobic002G430000--Sobic004G113400 Sobic010G139600 Sobic010G139600 Sobic002G430000--Sobic010G139600 Sobic008G092600 Sobic008G092600 Sobic002G430000--Sobic008G092600 Sobic003G110000 Sobic003G110000 Sobic002G430000--Sobic003G110000 Sobic006G237900--Sobic006G271200 Sobic006G237900--Sobic004G351300 Sobic006G237900--Sobic001G003000 Sobic006G237900--Sobic005G059600 Sobic010G129600 Sobic010G129600 Sobic006G237900--Sobic010G129600 Sobic006G237900--Sobic010G130200 Sobic006G237900--Sobic010G043400 Sobic006G237900--Sobic001G089800 Sobic006G237900--Sobic001G436900 Sobic004G004200--Sobic004G004300 Sobic001G281100 Sobic001G281100 Sobic004G004200--Sobic001G281100 Sobic004G004200--Sobic002G430000 Sobic004G269200 Sobic004G269200 Sobic004G004200--Sobic004G269200 Sobic001G101100 Sobic001G101100 Sobic004G004200--Sobic001G101100 Sobic004G004200--Sobic001G251200 Sobic004G004200--Sobic004G261600 Sobic004G004200--Sobic002G270500 Sobic003G126300 Sobic003G126300 Sobic004G004200--Sobic003G126300 Sobic001G003000--Sobic006G271200 Sobic001G003000--Sobic001G089800 Sobic001G003000--Sobic009G126900 Sobic004G102400 Sobic004G102400 Sobic001G003000--Sobic004G102400 Sobic001G003000--Sobic006G237900 Sobic003G005600 Sobic003G005600 Sobic001G003000--Sobic003G005600 Sobic001G003000--Sobic010G043400 Sobic009G193700 Sobic009G193700 Sobic001G003000--Sobic009G193700 Sobic001G350700 Sobic001G350700 Sobic001G003000--Sobic001G350700
Octagon: transcription factors


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