Gene annotation
Transcriptome id Sobic.010G020300.1
Synonym Sb10g001950
Functional annotation spastin, putative, expressed
UniProt C5Z3A1
Pfam PF05496
Panther DB PTHR23074 PTHR23074:SF86
NCBI CDD KOG0740; AAA+-type ATPase
KEGG Orthology K13254; spastin
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT2G45500 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os06g03940.1 : spastin, putative, expressed
MaizeGDB (Corn) Zm00025a050182 , Zm00025a041367
Brachypodium KQK19706
Barley HORVU7Hr1G013190.7 , HORVU7Hr1G013190.6 , HORVU7Hr1G013190.5 , HORVU7Hr1G013190.3 , HORVU7Hr1G013190.2 , HORVU7Hr1G013190.1 , HORVU7Hr1G013190.9 , HORVU7Hr1G013190.16 , HORVU7Hr1G013190.15 , HORVU7Hr1G013190.14 , HORVU7Hr1G013190.13 , HORVU7Hr1G013190.12 , HORVU7Hr1G013190.11 , HORVU7Hr1G013190.10 , HORVU7Hr1G013190.8 , HORVU7Hr1G013190.4
Wheat TraesCS4A02G422400 , TraesCS7A02G065800 , TraesCS7D02G060200
Populus -


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cDNA sequences
Sobic.010G020300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
2 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
3 Sobic.004G065000 expressed protein -
4 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
5 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.004G177300 SPRY-domain containing protein, putative, expressed -
7 Sobic.010G278200 expressed protein -
8 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
9 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.003G053800 WD40-like domain containing protein, putative, expressed -
11 Sobic.002G262900 farnesyltransferase/geranylgeranyltransferase type-1 subunitalpha, putative, expressed K05955: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha
12 Sobic.002G117400 expressed protein -
13 Sobic.002G008800 PTEN, putative, expressed K01110: phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
14 Sobic.007G132100 myrosinase precursor, putative, expressed -
15 Sobic.001G296900 dual specificity protein phosphatase, putative, expressed -
16 Sobic.010G261600 ubiquitin interaction motif family protein, expressed -
17 Sobic.010G004100 expressed protein -
18 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
19 Sobic.003G155900 mov34/MPN/PAD-1 family protein, expressed K11866: STAMBP, STAM-binding protein
20 Sobic.003G436300 expressed protein -


Gene co-expression network
sample Sobic010G020300 Sobic010G020300 Sobic001G124200 Sobic001G124200 Sobic010G020300--Sobic001G124200 Sobic010G205800 Sobic010G205800 Sobic010G020300--Sobic010G205800 Sobic004G065000 Sobic004G065000 Sobic010G020300--Sobic004G065000 Sobic001G390800 Sobic001G390800 Sobic010G020300--Sobic001G390800 Sobic003G352200 Sobic003G352200 Sobic010G020300--Sobic003G352200 Sobic004G177300 Sobic004G177300 Sobic010G020300--Sobic004G177300 Sobic010G278200 Sobic010G278200 Sobic010G020300--Sobic010G278200 Sobic001G227400 Sobic001G227400 Sobic010G020300--Sobic001G227400 Sobic001G121200 Sobic001G121200 Sobic010G020300--Sobic001G121200 Sobic001G124200--Sobic010G205800 Sobic001G124200--Sobic010G020300 Sobic003G155900 Sobic003G155900 Sobic001G124200--Sobic003G155900 Sobic004G039600 Sobic004G039600 Sobic001G124200--Sobic004G039600 Sobic001G124200--Sobic010G278200 Sobic007G132100 Sobic007G132100 Sobic001G124200--Sobic007G132100 Sobic009G138100 Sobic009G138100 Sobic001G124200--Sobic009G138100 Sobic001G124200--Sobic001G390800 Sobic009G228700 Sobic009G228700 Sobic001G124200--Sobic009G228700 Sobic010G205800--Sobic001G121200 Sobic010G205800--Sobic001G390800 Sobic010G205800--Sobic001G124200 Sobic001G007000 Sobic001G007000 Sobic010G205800--Sobic001G007000 Sobic001G000200 Sobic001G000200 Sobic010G205800--Sobic001G000200 Sobic002G262900 Sobic002G262900 Sobic010G205800--Sobic002G262900 Sobic004G274200 Sobic004G274200 Sobic010G205800--Sobic004G274200 Sobic006G199200 Sobic006G199200 Sobic010G205800--Sobic006G199200 Sobic001G079200 Sobic001G079200 Sobic010G205800--Sobic001G079200 Sobic007G075400 Sobic007G075400 Sobic004G065000--Sobic007G075400 Sobic004G331100 Sobic004G331100 Sobic004G065000--Sobic004G331100 Sobic009G133500 Sobic009G133500 Sobic004G065000--Sobic009G133500 Sobic007G163100 Sobic007G163100 Sobic004G065000--Sobic007G163100 Sobic007G133700 Sobic007G133700 Sobic004G065000--Sobic007G133700 Sobic010G139600 Sobic010G139600 Sobic004G065000--Sobic010G139600 Sobic001G313700 Sobic001G313700 Sobic004G065000--Sobic001G313700 Sobic001G273700 Sobic001G273700 Sobic004G065000--Sobic001G273700 Sobic001G085300 Sobic001G085300 Sobic004G065000--Sobic001G085300 Sobic001G268200 Sobic001G268200 Sobic001G390800--Sobic001G268200 Sobic001G390800--Sobic001G121200 Sobic003G313500 Sobic003G313500 Sobic001G390800--Sobic003G313500 Sobic001G390800--Sobic010G205800 Sobic001G390800--Sobic001G085300 Sobic010G147100 Sobic010G147100 Sobic001G390800--Sobic010G147100 Sobic001G390800--Sobic007G075400 Sobic001G390800--Sobic010G139600 Sobic001G050200 Sobic001G050200 Sobic001G390800--Sobic001G050200 Sobic009G044800 Sobic009G044800 Sobic003G352200--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic003G352200--Sobic001G473600 Sobic002G034600 Sobic002G034600 Sobic003G352200--Sobic002G034600 Sobic003G352200--Sobic004G274200 Sobic003G352200--Sobic003G155900 Sobic004G066200 Sobic004G066200 Sobic003G352200--Sobic004G066200 Sobic002G045600 Sobic002G045600 Sobic003G352200--Sobic002G045600 Sobic001G109800 Sobic001G109800 Sobic003G352200--Sobic001G109800 Sobic001G088100 Sobic001G088100 Sobic003G352200--Sobic001G088100 Sobic002G008800 Sobic002G008800 Sobic004G177300--Sobic002G008800 Sobic003G089000 Sobic003G089000 Sobic004G177300--Sobic003G089000 Sobic004G177300--Sobic002G262900 Sobic004G177300--Sobic004G065000 Sobic004G177300--Sobic010G020300 Sobic010G261600 Sobic010G261600 Sobic004G177300--Sobic010G261600 Sobic005G059600 Sobic005G059600 Sobic004G177300--Sobic005G059600 Sobic004G177300--Sobic009G133500 Sobic002G263600 Sobic002G263600 Sobic004G177300--Sobic002G263600 Sobic010G278200--Sobic010G147100 Sobic010G278200--Sobic009G138100 Sobic010G130000 Sobic010G130000 Sobic010G278200--Sobic010G130000 Sobic010G278200--Sobic001G124200 Sobic006G033200 Sobic006G033200 Sobic010G278200--Sobic006G033200 Sobic005G126600 Sobic005G126600 Sobic010G278200--Sobic005G126600 Sobic003G118200 Sobic003G118200 Sobic010G278200--Sobic003G118200 Sobic003G316500 Sobic003G316500 Sobic010G278200--Sobic003G316500 Sobic008G124900 Sobic008G124900 Sobic010G278200--Sobic008G124900 Sobic001G227400--Sobic009G044800 Sobic007G218000 Sobic007G218000 Sobic001G227400--Sobic007G218000 Sobic001G493200 Sobic001G493200 Sobic001G227400--Sobic001G493200 Sobic001G493700 Sobic001G493700 Sobic001G227400--Sobic001G493700 Sobic006G088200 Sobic006G088200 Sobic001G227400--Sobic006G088200 Sobic009G084900 Sobic009G084900 Sobic001G227400--Sobic009G084900 Sobic003G195000 Sobic003G195000 Sobic001G227400--Sobic003G195000 Sobic005G172500 Sobic005G172500 Sobic001G227400--Sobic005G172500 Sobic001G289800 Sobic001G289800 Sobic001G227400--Sobic001G289800 Sobic001G121200--Sobic001G390800 Sobic001G121200--Sobic010G205800 Sobic001G121200--Sobic001G268200 Sobic009G113000 Sobic009G113000 Sobic001G121200--Sobic009G113000 Sobic002G111000 Sobic002G111000 Sobic001G121200--Sobic002G111000 Sobic001G121200--Sobic010G147100 Sobic001G207000 Sobic001G207000 Sobic001G121200--Sobic001G207000 Sobic001G146800 Sobic001G146800 Sobic001G121200--Sobic001G146800 Sobic009G056200 Sobic009G056200 Sobic001G121200--Sobic009G056200
Octagon: transcription factors


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