Gene annotation
Transcriptome id Sobic.004G004200.1
Synonym Sb04g000560
Functional annotation expressed protein
UniProt C5XRJ4
Pfam PF12932 PF12931
Panther DB PTHR13402 PTHR13402:SF12
NCBI CDD KOG1913; Regucalcin gene promoter region-related protein (RGPR)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G47490 : RGPR-related
RAP-DB (Rice) LOC_Os02g01490.1 : expressed protein
MaizeGDB (Corn) Zm00025a035084 , Zm00025a041165 , Zm00025a018643
Brachypodium KQJ92800
Barley HORVU6Hr1G003500.8 , HORVU6Hr1G003500.1 , HORVU6Hr1G003500.2 , HORVU6Hr1G003500.3 , HORVU6Hr1G003500.4 , HORVU6Hr1G003500.5 , HORVU6Hr1G003500.6 , HORVU6Hr1G003500.7 , HORVU7Hr1G001370.1 , HORVU7Hr1G001370.2 , HORVU7Hr1G001370.3 , HORVU7Hr1G001370.5 , HORVU7Hr1G001370.6 , HORVU7Hr1G001370.7
Wheat TraesCS6D02G022300 , TraesCS7A02G015000 , TraesCS7A02G015000 , TraesCS7D02G012000 , TraesCS7D02G012000 , TraesCS4A02G481400 , TraesCS6A02G019400 , TraesCS6B02G026100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G004300 expressed protein -
2 Sobic.001G281100 START domain containing protein, expressed -
3 Sobic.002G430000 expressed protein K08518: STXBP5, syntaxin-binding protein 5
4 Sobic.004G269200 protein kinase, putative, expressed K18670: dual specificity protein kinase YAK1
5 Sobic.001G101100 mitochondrial carrier protein, putative, expressed K15115: SLC25A32, solute carrier family 25 (mitochondrial folate transporter), member 32
6 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
7 Sobic.004G261600 expressed protein -
8 Sobic.002G270500 UBX domain-containing protein, putative, expressed -
9 Sobic.003G126300 OsRhmbd2 - Putative Rhomboid homologue, expressed -
10 Sobic.003G036800 WD domain, G-beta repeat domain containing protein, expressed K10260: FBXW7, F-box and WD-40 domain protein 7
11 Sobic.005G026200 HEAT repeat family protein, putative, expressed K11886: proteasome component ECM29
12 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
13 Sobic.010G232600 solute carrier family 35 member F5, putative, expressed K15289: solute carrier family 35, member F5
14 Sobic.003G159600 auxilin, putative, expressed -
15 Sobic.001G207400 katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed K18643: katanin p80 WD40 repeat-containing subunit B1
16 Sobic.002G156000 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed K14724: SLC9A8, solute carrier family 9 (sodium/hydrogen exchanger), member 8
17 Sobic.004G355000 SAC9, putative, expressed -
18 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
19 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
20 Sobic.002G155301 - -


Gene co-expression network
sample Sobic004G004200 Sobic004G004200 Sobic004G004300 Sobic004G004300 Sobic004G004200--Sobic004G004300 Sobic001G281100 Sobic001G281100 Sobic004G004200--Sobic001G281100 Sobic002G430000 Sobic002G430000 Sobic004G004200--Sobic002G430000 Sobic004G269200 Sobic004G269200 Sobic004G004200--Sobic004G269200 Sobic001G101100 Sobic001G101100 Sobic004G004200--Sobic001G101100 Sobic001G251200 Sobic001G251200 Sobic004G004200--Sobic001G251200 Sobic004G261600 Sobic004G261600 Sobic004G004200--Sobic004G261600 Sobic002G270500 Sobic002G270500 Sobic004G004200--Sobic002G270500 Sobic003G126300 Sobic003G126300 Sobic004G004200--Sobic003G126300 Sobic004G004300--Sobic001G281100 Sobic005G026200 Sobic005G026200 Sobic004G004300--Sobic005G026200 Sobic001G534800 Sobic001G534800 Sobic004G004300--Sobic001G534800 Sobic006G126100 Sobic006G126100 Sobic004G004300--Sobic006G126100 Sobic001G117200 Sobic001G117200 Sobic004G004300--Sobic001G117200 Sobic004G004300--Sobic004G004200 Sobic001G415300 Sobic001G415300 Sobic004G004300--Sobic001G415300 Sobic010G275500 Sobic010G275500 Sobic004G004300--Sobic010G275500 Sobic005G003300 Sobic005G003300 Sobic004G004300--Sobic005G003300 Sobic001G281100--Sobic001G534800 Sobic001G281100--Sobic004G004300 Sobic001G065000 Sobic001G065000 Sobic001G281100--Sobic001G065000 Sobic001G281100--Sobic005G026200 Sobic008G099800 Sobic008G099800 Sobic001G281100--Sobic008G099800 Sobic003G229500 Sobic003G229500 Sobic001G281100--Sobic003G229500 Sobic006G012500 Sobic006G012500 Sobic001G281100--Sobic006G012500 Sobic004G072100 Sobic004G072100 Sobic001G281100--Sobic004G072100 Sobic001G281100--Sobic010G275500 Sobic001G207400 Sobic001G207400 Sobic002G430000--Sobic001G207400 Sobic002G430000--Sobic001G117200 Sobic004G355000 Sobic004G355000 Sobic002G430000--Sobic004G355000 Sobic008G098900 Sobic008G098900 Sobic002G430000--Sobic008G098900 Sobic001G016700 Sobic001G016700 Sobic002G430000--Sobic001G016700 Sobic004G113400 Sobic004G113400 Sobic002G430000--Sobic004G113400 Sobic010G139600 Sobic010G139600 Sobic002G430000--Sobic010G139600 Sobic008G092600 Sobic008G092600 Sobic002G430000--Sobic008G092600 Sobic003G110000 Sobic003G110000 Sobic002G430000--Sobic003G110000 Sobic009G027300 Sobic009G027300 Sobic004G269200--Sobic009G027300 Sobic001G050200 Sobic001G050200 Sobic004G269200--Sobic001G050200 Sobic004G269200--Sobic001G281100 Sobic004G329400 Sobic004G329400 Sobic004G269200--Sobic004G329400 Sobic004G331100 Sobic004G331100 Sobic004G269200--Sobic004G331100 Sobic003G101400 Sobic003G101400 Sobic004G269200--Sobic003G101400 Sobic004G269200--Sobic004G004300 Sobic005G157000 Sobic005G157000 Sobic004G269200--Sobic005G157000 Sobic004G269200--Sobic001G534800 Sobic001G101100--Sobic004G004200 Sobic010G232600 Sobic010G232600 Sobic001G101100--Sobic010G232600 Sobic009G010600 Sobic009G010600 Sobic001G101100--Sobic009G010600 Sobic001G101100--Sobic004G004300 Sobic001G101100--Sobic001G281100 Sobic008G110600 Sobic008G110600 Sobic001G101100--Sobic008G110600 Sobic006G052800 Sobic006G052800 Sobic001G101100--Sobic006G052800 Sobic001G101100--Sobic006G126100 Sobic004G178200 Sobic004G178200 Sobic001G101100--Sobic004G178200 Sobic003G362600 Sobic003G362600 Sobic001G251200--Sobic003G362600 Sobic001G128300 Sobic001G128300 Sobic001G251200--Sobic001G128300 Sobic009G165700 Sobic009G165700 Sobic001G251200--Sobic009G165700 Sobic001G251200--Sobic004G004300 Sobic001G251200--Sobic004G261600 Sobic001G451400 Sobic001G451400 Sobic001G251200--Sobic001G451400 Sobic001G043100 Sobic001G043100 Sobic001G251200--Sobic001G043100 Sobic006G131000 Sobic006G131000 Sobic001G251200--Sobic006G131000 Sobic001G251200--Sobic001G281100 Sobic004G228800 Sobic004G228800 Sobic004G261600--Sobic004G228800 Sobic004G261600--Sobic006G126100 Sobic003G209200 Sobic003G209200 Sobic004G261600--Sobic003G209200 Sobic003G104000 Sobic003G104000 Sobic004G261600--Sobic003G104000 Sobic007G005500 Sobic007G005500 Sobic004G261600--Sobic007G005500 Sobic004G261600--Sobic001G251200 Sobic004G261600--Sobic001G415300 Sobic004G261600--Sobic004G004300 Sobic004G261600--Sobic008G099800 Sobic007G024700 Sobic007G024700 Sobic002G270500--Sobic007G024700 Sobic002G270500--Sobic001G207400 Sobic002G270500--Sobic004G355000 Sobic002G270500--Sobic005G157000 Sobic002G270500--Sobic002G430000 Sobic009G126900 Sobic009G126900 Sobic002G270500--Sobic009G126900 Sobic009G094300 Sobic009G094300 Sobic002G270500--Sobic009G094300 Sobic002G270500--Sobic004G113400 Sobic002G270500--Sobic004G269200 Sobic003G126300--Sobic004G228800 Sobic009G079300 Sobic009G079300 Sobic003G126300--Sobic009G079300 Sobic003G126300--Sobic004G004200 Sobic003G126300--Sobic008G110600 Sobic003G126300--Sobic004G261600 Sobic006G034000 Sobic006G034000 Sobic003G126300--Sobic006G034000 Sobic003G272400 Sobic003G272400 Sobic003G126300--Sobic003G272400 Sobic007G056600 Sobic007G056600 Sobic003G126300--Sobic007G056600 Sobic006G033200 Sobic006G033200 Sobic003G126300--Sobic006G033200
Octagon: transcription factors


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