Gene annotation
Transcriptome id Sobic.004G182600.2,Sobic.004G182600.1
Synonym Sb04g023190
Functional annotation expressed protein
UniProt A0A194YRJ2 , C5XUZ4
Pfam -
Panther DB PTHR22814 PTHR22814:SF121
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os06g30480.1 : expressed protein
MaizeGDB (Corn) Zm00025a032501 , Zm00025a031648
Brachypodium KQK00994
Barley HORVU6Hr1G069920.18 , HORVU6Hr1G069920.15
Wheat TraesCS6B02G305300 , TraesCS6D02G257900 , TraesCS6A02G277300
Populus -


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cDNA sequences
Sobic.004G182600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G028100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@electron transfer flavoprotein subunit beta, putative, expressed K03521: fixA, electron transfer flavoprotein beta subunit
2 Sobic.001G130000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
3 Sobic.003G061800 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
4 Sobic.007G186000 radical SAM enzyme, putative, expressed K01012: biotin synthase
5 Sobic.003G354400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
6 Sobic.009G126900 mitochondrial carrier protein, putative, expressed -
7 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
8 Sobic.009G034700 aspartic proteinase oryzasin-1 precursor, putative, expressed K08245: phytepsin
9 Sobic.005G217200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.008G144401 - -
11 Sobic.003G388251 - K01166: ribonuclease T2
12 Sobic.005G178100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@F-box/Kelch-repeat protein, putative, expressed -
13 Sobic.008G090600 expressed protein -
14 Sobic.010G018100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pollen ankyrin, putative, expressed K19044: E3 ubiquitin-protein ligase XBAT32/33
15 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
16 Sobic.002G378800 GRAM domain containing protein, expressed -
17 Sobic.006G157600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Thireodoxin family protein (Os)(PubMedID : 27208977)@thioredoxin, putative, expressed K03671: thioredoxin 1
18 Sobic.003G116900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
19 Sobic.001G474500 mitochondrial carrier protein, putative, expressed -
20 Sobic.008G177200 amino acid permease, putative, expressed K13863: SLC7A1, solute carrier family 7 (cationic amino acid transporter), member 1


Gene co-expression network
sample Sobic004G182600 Sobic004G182600 Sobic006G028100 Sobic006G028100 Sobic004G182600--Sobic006G028100 Sobic001G130000 Sobic001G130000 Sobic004G182600--Sobic001G130000 Sobic003G061800 Sobic003G061800 Sobic004G182600--Sobic003G061800 Sobic007G186000 Sobic007G186000 Sobic004G182600--Sobic007G186000 Sobic003G354400 Sobic003G354400 Sobic004G182600--Sobic003G354400 Sobic009G126900 Sobic009G126900 Sobic004G182600--Sobic009G126900 Sobic004G345800 Sobic004G345800 Sobic004G182600--Sobic004G345800 Sobic009G034700 Sobic009G034700 Sobic004G182600--Sobic009G034700 Sobic005G217200 Sobic005G217200 Sobic004G182600--Sobic005G217200 Sobic006G242000 Sobic006G242000 Sobic006G028100--Sobic006G242000 Sobic006G028100--Sobic004G182600 Sobic006G028100--Sobic004G345800 Sobic006G028100--Sobic001G130000 Sobic003G097100 Sobic003G097100 Sobic006G028100--Sobic003G097100 Sobic006G028100--Sobic003G061800 Sobic001G392400 Sobic001G392400 Sobic006G028100--Sobic001G392400 Sobic002G315800 Sobic002G315800 Sobic006G028100--Sobic002G315800 Sobic006G157600 Sobic006G157600 Sobic006G028100--Sobic006G157600 Sobic001G474500 Sobic001G474500 Sobic001G130000--Sobic001G474500 Sobic001G130000--Sobic009G034700 Sobic007G068100 Sobic007G068100 Sobic001G130000--Sobic007G068100 Sobic003G388251 Sobic003G388251 Sobic001G130000--Sobic003G388251 Sobic001G325200 Sobic001G325200 Sobic001G130000--Sobic001G325200 Sobic001G069900 Sobic001G069900 Sobic001G130000--Sobic001G069900 Sobic008G079300 Sobic008G079300 Sobic001G130000--Sobic008G079300 Sobic008G017800 Sobic008G017800 Sobic001G130000--Sobic008G017800 Sobic001G130000--Sobic004G345800 Sobic009G057300 Sobic009G057300 Sobic003G061800--Sobic009G057300 Sobic003G061800--Sobic004G345800 Sobic003G061800--Sobic003G354400 Sobic003G061800--Sobic001G474500 Sobic003G061800--Sobic009G126900 Sobic003G061800--Sobic003G388251 Sobic003G061800--Sobic007G068100 Sobic003G329400 Sobic003G329400 Sobic003G061800--Sobic003G329400 Sobic004G101900 Sobic004G101900 Sobic003G061800--Sobic004G101900 Sobic006G034000 Sobic006G034000 Sobic007G186000--Sobic006G034000 Sobic007G186000--Sobic009G126900 Sobic003G436300 Sobic003G436300 Sobic007G186000--Sobic003G436300 Sobic008G074700 Sobic008G074700 Sobic007G186000--Sobic008G074700 Sobic008G093000 Sobic008G093000 Sobic007G186000--Sobic008G093000 Sobic008G110600 Sobic008G110600 Sobic007G186000--Sobic008G110600 Sobic004G119100 Sobic004G119100 Sobic007G186000--Sobic004G119100 Sobic002G270500 Sobic002G270500 Sobic007G186000--Sobic002G270500 Sobic007G186000--Sobic004G182600 Sobic003G354400--Sobic003G061800 Sobic003G354400--Sobic003G329400 Sobic003G354400--Sobic009G057300 Sobic010G130200 Sobic010G130200 Sobic003G354400--Sobic010G130200 Sobic008G144401 Sobic008G144401 Sobic003G354400--Sobic008G144401 Sobic001G120300 Sobic001G120300 Sobic003G354400--Sobic001G120300 Sobic001G111150 Sobic001G111150 Sobic003G354400--Sobic001G111150 Sobic008G147700 Sobic008G147700 Sobic003G354400--Sobic008G147700 Sobic003G354400--Sobic009G126900 Sobic010G043400 Sobic010G043400 Sobic009G126900--Sobic010G043400 Sobic009G126900--Sobic002G270500 Sobic002G009700 Sobic002G009700 Sobic009G126900--Sobic002G009700 Sobic006G271200 Sobic006G271200 Sobic009G126900--Sobic006G271200 Sobic001G003000 Sobic001G003000 Sobic009G126900--Sobic001G003000 Sobic004G124200 Sobic004G124200 Sobic009G126900--Sobic004G124200 Sobic003G005600 Sobic003G005600 Sobic009G126900--Sobic003G005600 Sobic009G126900--Sobic003G329400 Sobic009G126900--Sobic004G101900 Sobic004G345800--Sobic003G061800 Sobic004G345800--Sobic001G474500 Sobic003G184900 Sobic003G184900 Sobic004G345800--Sobic003G184900 Sobic004G345800--Sobic003G388251 Sobic004G345800--Sobic008G079300 Sobic004G345800--Sobic007G068100 Sobic004G345800--Sobic009G057300 Sobic006G127100 Sobic006G127100 Sobic004G345800--Sobic006G127100 Sobic004G321800 Sobic004G321800 Sobic004G345800--Sobic004G321800 Sobic005G178100 Sobic005G178100 Sobic009G034700--Sobic005G178100 Sobic009G034700--Sobic003G388251 Sobic009G034700--Sobic004G124200 Sobic009G034700--Sobic001G474500 Sobic009G034700--Sobic001G069900 Sobic006G028900 Sobic006G028900 Sobic009G034700--Sobic006G028900 Sobic009G034700--Sobic008G079300 Sobic009G034700--Sobic001G325200 Sobic001G015500 Sobic001G015500 Sobic009G034700--Sobic001G015500 Sobic008G189200 Sobic008G189200 Sobic005G217200--Sobic008G189200 Sobic010G210200 Sobic010G210200 Sobic005G217200--Sobic010G210200 Sobic003G363100 Sobic003G363100 Sobic005G217200--Sobic003G363100 Sobic005G217200--Sobic009G126900 Sobic004G237600 Sobic004G237600 Sobic005G217200--Sobic004G237600 Sobic003G276000 Sobic003G276000 Sobic005G217200--Sobic003G276000 Sobic003G244600 Sobic003G244600 Sobic005G217200--Sobic003G244600 Sobic010G162900 Sobic010G162900 Sobic005G217200--Sobic010G162900 Sobic002G172900 Sobic002G172900 Sobic005G217200--Sobic002G172900
Octagon: transcription factors


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